Wall clock time and date at job start Tue Mar 31 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 C 1.52995 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.56208 * 29.31075 * 4 3 2 6 6 C 1.53080 * 117.49672 * 243.60382 * 4 3 2 7 7 C 1.53003 * 59.98360 * 252.51403 * 6 4 3 8 8 H 1.09000 * 117.50056 * 107.49697 * 7 6 4 9 9 C 1.50697 * 117.49730 * 252.49849 * 7 6 4 10 10 O 1.21284 * 120.00355 * 68.74019 * 9 7 6 11 11 N 1.34783 * 119.99783 * 248.74855 * 9 7 6 12 12 C 1.46494 * 119.99755 * 179.97438 * 11 9 7 13 13 H 1.08998 * 110.64482 * 31.85864 * 12 11 9 14 14 C 1.54332 * 111.00418 * 268.77552 * 12 11 9 15 15 N 1.47023 * 107.26961 * 219.60479 * 14 12 11 16 16 C 1.36931 * 125.64764 * 178.85050 * 15 14 12 17 17 H 1.08002 * 120.00438 * 359.71989 * 16 15 14 18 18 C 1.38817 * 119.99680 * 179.43947 * 16 15 14 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00121 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00072 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99871 * 20 18 16 24 24 C 1.47429 * 108.70139 * 358.58464 * 15 14 12 25 25 C 1.54909 * 104.83064 * 24.35611 * 24 15 14 26 26 H 1.09000 * 111.00555 * 81.06615 * 25 24 15 27 27 O 1.42902 * 111.00232 * 204.91511 * 25 24 15 28 28 H 1.09001 * 109.47539 * 299.99836 * 1 2 3 29 29 H 1.08997 * 109.47171 * 59.99987 * 1 2 3 30 30 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47539 * 240.00164 * 2 1 3 32 32 H 1.09007 * 109.47109 * 120.00062 * 2 1 3 33 33 H 1.09000 * 109.47092 * 60.00002 * 3 2 1 34 34 H 1.08997 * 109.47020 * 300.00105 * 3 2 1 35 35 H 1.08993 * 117.51859 * 145.03446 * 6 4 3 36 36 H 1.09007 * 117.48852 * 359.97438 * 6 4 3 37 37 H 0.96995 * 119.99648 * 359.97438 * 11 9 7 38 38 H 1.08999 * 109.99014 * 100.12971 * 14 12 11 39 39 H 1.08998 * 109.78107 * 338.96239 * 14 12 11 40 40 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.36548 * 143.19539 * 24 15 14 42 42 H 1.08999 * 110.36380 * 265.52047 * 24 15 14 43 43 H 0.96700 * 114.00220 * 298.54385 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0405 0.5850 -0.4804 6 6 4.2762 2.0464 1.2172 7 6 4.2765 2.7945 -0.1175 8 1 3.6513 3.6839 -0.1961 9 6 5.5696 2.8386 -0.8901 10 8 6.0116 1.8264 -1.3911 11 7 6.2350 4.0030 -1.0242 12 6 7.4924 4.0458 -1.7748 13 1 7.4842 3.3117 -2.5804 14 6 8.7008 3.8134 -0.8434 15 7 9.7689 4.7253 -1.2784 16 6 11.0019 4.8460 -0.6953 17 1 11.2545 4.2421 0.1638 18 6 11.9294 5.7404 -1.2118 19 7 11.6217 6.4762 -2.2588 20 14 13.6143 5.8995 -0.4210 21 1 14.5530 4.9418 -1.0589 22 1 14.1187 7.2840 -0.6050 23 1 13.5105 5.5992 1.0297 24 6 9.2948 5.4836 -2.4505 25 6 7.7502 5.4704 -2.3330 26 1 7.4050 6.2323 -1.6341 27 8 7.1377 5.6375 -3.6133 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.2112 1.5862 1.5364 36 1 3.6504 2.4438 2.0163 37 1 5.8814 4.8126 -0.6237 38 1 9.0398 2.7806 -0.9234 39 1 8.4208 4.0351 0.1864 40 1 12.2697 7.1015 -2.6195 41 1 9.6691 6.5067 -2.4171 42 1 9.6093 4.9935 -3.3719 43 1 7.3515 6.4758 -4.0452 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077639781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:17 Heat of formation + Delta-G solvation = -72.393779 kcal Electronic energy + Delta-G solvation = -22177.210213 eV Core-core repulsion = 18836.403774 eV Total energy + Delta-G solvation = -3340.806439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27366 -39.71782 -38.04768 -36.71147 -35.57973 -34.71373 -33.62089 -30.37000 -29.00430 -28.22839 -26.57760 -24.79774 -22.84144 -22.49230 -21.83089 -21.45023 -20.97443 -19.11647 -18.56595 -18.07228 -17.36198 -16.64392 -16.15112 -16.04001 -15.78701 -15.61678 -15.23497 -14.95061 -14.73231 -14.18658 -14.06342 -13.75163 -13.72227 -13.24785 -13.17070 -13.08089 -12.91963 -12.84284 -12.74853 -12.18983 -12.07157 -11.96000 -11.92202 -11.65723 -11.45961 -11.25097 -11.10270 -10.97205 -10.80062 -10.71300 -10.19782 -9.00703 -7.84589 -5.31093 1.45389 1.46815 1.48537 1.57090 2.01588 2.45477 2.86654 3.04549 3.27036 3.55894 3.60659 3.74710 3.81507 3.92076 4.01635 4.16278 4.20767 4.24021 4.32100 4.40183 4.41336 4.55489 4.66823 4.79270 4.84214 4.90738 4.93404 4.96820 5.02319 5.09767 5.23481 5.34522 5.38659 5.41021 5.42588 5.44831 5.54525 5.64349 6.18043 6.52508 6.83175 7.02014 7.22153 7.65832 8.28304 9.17485 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033590 B = 0.003084 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.378491 B = 9076.548658 C = 9636.736786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.121 4.121 5 H 0.089 0.911 6 C -0.135 4.135 7 C -0.191 4.191 8 H 0.154 0.846 9 C 0.536 3.464 10 O -0.590 6.590 11 N -0.698 5.698 12 C 0.153 3.847 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.619 5.619 16 C -0.245 4.245 17 H 0.081 0.919 18 C -0.062 4.062 19 N -0.947 5.947 20 Si 0.985 3.015 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.133 3.867 25 C 0.092 3.908 26 H 0.089 0.911 27 O -0.569 6.569 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.137 0.863 37 H 0.417 0.583 38 H 0.012 0.988 39 H 0.043 0.957 40 H 0.251 0.749 41 H 0.093 0.907 42 H -0.009 1.009 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.476 -3.761 6.443 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.140 4.140 5 H 0.107 0.893 6 C -0.172 4.172 7 C -0.212 4.212 8 H 0.172 0.828 9 C 0.324 3.676 10 O -0.471 6.471 11 N -0.349 5.349 12 C 0.047 3.953 13 H 0.091 0.909 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.374 4.374 17 H 0.099 0.901 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.812 3.188 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.193 1.193 24 C 0.007 3.993 25 C 0.031 3.969 26 H 0.106 0.894 27 O -0.376 6.376 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.154 0.846 37 H 0.254 0.746 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.111 0.889 42 H 0.009 0.991 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.234 -4.934 6.205 22.666 hybrid contribution 1.666 0.776 -0.169 1.846 sum -19.568 -4.158 6.036 20.896 Atomic orbital electron populations 1.21762 0.94864 1.01978 1.02209 1.21509 0.96475 0.96356 1.01863 1.21226 0.89883 0.97684 1.03146 1.22473 0.96049 0.94123 1.01386 0.89264 1.23228 1.02786 1.00840 0.90340 1.22332 0.95787 1.00532 1.02506 0.82807 1.20485 0.85546 0.82366 0.79174 1.90676 1.70319 1.35572 1.50498 1.45706 1.22678 1.11762 1.54760 1.21532 0.83435 0.97232 0.93106 0.90920 1.21667 0.88084 0.92911 0.96813 1.44555 1.12459 1.44162 1.33467 1.19448 0.89519 1.18559 1.09838 0.90109 1.25657 1.02275 0.98894 0.98636 1.69952 1.35223 1.28451 1.25952 0.84991 0.78874 0.76716 0.78185 1.21648 1.21375 1.19301 1.22402 0.89768 0.99285 0.87869 1.23269 0.93049 0.95076 0.85470 0.89382 1.86382 1.73061 1.45324 1.32867 0.91907 0.92678 0.92525 0.93033 0.91750 0.89649 0.91280 0.89831 0.84552 0.74569 0.96981 0.93937 0.93902 0.88940 0.99113 0.75251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.71 5.89 30.59 0.18 -1.53 16 3 C -0.08 -1.13 5.50 30.59 0.17 -0.96 16 4 C -0.12 -2.38 5.25 -10.77 -0.06 -2.43 16 5 H 0.09 2.28 7.60 -2.39 -0.02 2.27 16 6 C -0.13 -2.33 9.88 30.62 0.30 -2.03 16 7 C -0.19 -3.91 5.91 -11.54 -0.07 -3.98 16 8 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 9 C 0.54 16.68 7.61 87.65 0.67 17.35 16 10 O -0.59 -24.15 15.90 -3.04 -0.05 -24.20 16 11 N -0.70 -20.94 5.12 -436.90 -2.24 -23.17 16 12 C 0.15 5.95 3.04 46.19 0.14 6.10 16 13 H 0.07 3.26 7.55 -2.39 -0.02 3.24 16 14 C 0.13 5.92 7.01 86.73 0.61 6.53 16 15 N -0.62 -32.48 3.39 -691.96 -2.35 -34.83 16 16 C -0.25 -13.83 10.27 84.04 0.86 -12.96 16 17 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 18 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 19 N -0.95 -54.91 10.09 21.65 0.22 -54.70 16 20 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.13 6.48 5.61 86.85 0.49 6.97 16 25 C 0.09 3.42 4.06 31.99 0.13 3.55 16 26 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16 27 O -0.57 -19.11 13.47 -148.98 -2.01 -21.12 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.08 0.86 7.87 -2.39 -0.02 0.84 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.14 1.48 8.03 -2.38 -0.02 1.46 16 37 H 0.42 9.47 8.56 -92.71 -0.79 8.68 16 38 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 40 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 41 H 0.09 4.91 5.88 -2.39 -0.01 4.89 16 42 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.40 9.98 9.11 -74.06 -0.67 9.31 16 Total: -1.00 -72.54 352.51 -0.26 -72.80 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.46 Total: 25.43 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 4.60 Total: 12.67 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.37 Total: -112.70 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -2.06 Total: -45.32 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.54 -0.26 -72.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077639781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.406 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds