Wall clock time and date at job start Tue Mar 31 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09001 * 110.63917 * 31.68664 * 3 2 1 5 5 C 1.54324 * 110.71739 * 268.54843 * 3 2 1 6 6 N 1.47025 * 107.26675 * 219.43943 * 5 3 2 7 7 C 1.36944 * 125.64610 * 178.97434 * 6 5 3 8 8 H 1.07994 * 119.99867 * 179.97438 * 7 6 5 9 9 C 1.38812 * 120.00082 * 359.97438 * 7 6 5 10 10 N 1.31627 * 119.99816 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00143 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47159 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47496 * 120.00044 * 11 9 7 14 14 H 1.48508 * 109.46788 * 240.00103 * 11 9 7 15 15 C 1.47422 * 108.70721 * 358.94618 * 6 5 3 16 16 C 1.54911 * 104.83114 * 24.12398 * 15 6 5 17 17 H 1.08998 * 111.00776 * 81.06673 * 16 15 6 18 18 N 1.46500 * 111.00655 * 204.91828 * 16 15 6 19 19 C 1.34774 * 120.00186 * 267.20058 * 18 16 15 20 20 O 1.21279 * 119.99960 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00069 * 179.97438 * 19 18 16 22 22 H 1.09002 * 115.54972 * 325.57617 * 21 19 18 23 23 C 1.53002 * 117.50107 * 111.24918 * 21 19 18 24 24 C 1.52998 * 117.49744 * 179.91159 * 21 19 18 25 25 C 1.52995 * 117.49966 * 359.97438 * 24 21 19 26 26 C 1.53007 * 117.50080 * 145.01840 * 24 21 19 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 30 30 H 1.08997 * 109.88660 * 338.86315 * 5 3 2 31 31 H 1.08998 * 109.88385 * 99.87154 * 5 3 2 32 32 H 0.96995 * 119.99690 * 179.97438 * 10 9 7 33 33 H 1.08994 * 110.36675 * 142.96130 * 15 6 5 34 34 H 1.08995 * 110.36645 * 265.29000 * 15 6 5 35 35 H 0.97002 * 119.99537 * 87.19460 * 18 16 15 36 36 H 1.08996 * 117.50217 * 214.97703 * 23 21 19 37 37 H 1.09004 * 117.49497 * 359.97438 * 23 21 19 38 38 H 1.09002 * 109.47308 * 60.00185 * 25 24 21 39 39 H 1.09007 * 109.46983 * 180.02562 * 25 24 21 40 40 H 1.09003 * 109.47098 * 299.99874 * 25 24 21 41 41 H 1.09007 * 109.46597 * 59.99632 * 26 24 21 42 42 H 1.08995 * 109.47091 * 179.97438 * 26 24 21 43 43 H 1.08994 * 109.46961 * 299.99987 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3737 2.0095 0.5358 5 6 2.2658 1.7893 -1.4430 6 7 3.5562 2.4939 -1.4450 7 6 4.1554 3.0588 -2.5392 8 1 5.1081 3.5567 -2.4362 9 6 3.5381 2.9914 -3.7807 10 7 2.3771 2.3840 -3.9062 11 14 4.3557 3.7613 -5.2733 12 1 5.6448 4.3776 -4.8688 13 1 4.6064 2.7140 -6.2957 14 1 3.4654 4.8051 -5.8419 15 6 4.0980 2.4921 -0.0739 16 6 3.4354 1.2718 0.6127 17 1 3.9515 0.3481 0.3509 18 7 3.3864 1.4495 2.0661 19 6 4.3815 0.9691 2.8377 20 8 5.3173 0.3892 2.3289 21 6 4.3314 1.1524 4.3326 22 1 3.8803 2.0829 4.6772 23 6 4.1185 -0.0962 5.1908 24 6 5.4900 0.5826 5.1534 25 6 6.6105 -0.1302 4.3937 26 6 5.9264 1.3622 6.3956 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 2.3088 0.9349 -2.1184 31 1 1.4704 2.4670 -1.7531 32 1 1.9456 2.3372 -4.7737 33 1 5.1814 2.3739 -0.0943 34 1 3.8256 3.4123 0.4428 35 1 2.6378 1.9131 2.4730 36 1 3.5277 0.0128 6.1002 37 1 4.0142 -1.0503 4.6740 38 1 7.0702 0.5631 3.6894 39 1 7.3620 -0.4822 5.1006 40 1 6.1974 -0.9799 3.8501 41 1 5.0899 1.4360 7.0906 42 1 6.7545 0.8430 6.8780 43 1 6.2452 2.3626 6.1032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081532334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:39 Heat of formation + Delta-G solvation = -28.849396 kcal Electronic energy + Delta-G solvation = -22961.410415 eV Core-core repulsion = 19622.492202 eV Total energy + Delta-G solvation = -3338.918213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.18003 -38.55203 -37.02265 -35.81385 -33.98998 -31.77732 -29.67648 -28.69740 -27.48937 -27.17999 -26.12884 -24.68216 -23.43328 -20.68882 -20.49406 -19.97684 -19.07381 -17.31512 -16.83953 -16.28392 -15.54443 -15.07038 -14.82387 -14.45817 -14.22680 -14.13311 -13.99748 -13.70669 -13.27837 -13.13986 -12.78395 -12.57165 -12.23136 -12.03000 -11.90147 -11.87713 -11.53471 -11.29393 -11.23297 -11.00219 -10.82095 -10.72864 -10.28350 -10.11497 -9.98674 -9.89759 -9.79224 -9.39685 -9.04779 -8.73189 -8.55654 -6.88523 -5.73255 -3.08259 2.67485 3.27739 3.40520 3.46187 3.48715 3.71371 4.15189 4.49936 4.54415 4.61503 4.72137 4.98455 5.06812 5.20540 5.42002 5.44234 5.49307 5.52528 5.56049 5.59223 5.66699 5.72411 5.80240 5.81791 5.88435 5.92897 5.94655 6.00076 6.07153 6.14829 6.18435 6.49663 6.59270 6.64951 6.90163 7.26208 7.48512 7.71241 7.76291 7.87075 8.20389 8.49503 9.17739 9.77835 10.41027 11.38215 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.004228 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.514905 B = 6621.125104 C = 7612.055204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.055 3.945 4 H 0.061 0.939 5 C 0.164 3.836 6 N -0.601 5.601 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.135 3.865 17 H 0.106 0.894 18 N -0.713 5.713 19 C 0.542 3.458 20 O -0.533 6.533 21 C -0.187 4.187 22 H 0.120 0.880 23 C -0.149 4.149 24 C -0.095 4.095 25 C -0.104 4.104 26 C -0.116 4.116 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.252 0.748 33 H 0.050 0.950 34 H 0.022 0.978 35 H 0.396 0.604 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -2.782 19.091 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.004 4.004 4 H 0.079 0.921 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.029 3.971 17 H 0.124 0.876 18 N -0.363 5.363 19 C 0.328 3.672 20 O -0.409 6.409 21 C -0.208 4.208 22 H 0.138 0.862 23 C -0.186 4.186 24 C -0.095 4.095 25 C -0.160 4.160 26 C -0.173 4.173 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.229 0.771 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.402 -3.351 18.471 18.777 hybrid contribution -0.514 0.988 -0.700 1.315 sum -0.916 -2.363 17.771 17.951 Atomic orbital electron populations 1.22696 0.81736 1.01996 0.99805 1.87903 1.19113 1.27594 1.95076 1.23841 0.92718 0.84068 0.99741 0.92067 1.21579 0.88559 0.96914 0.89130 1.44268 1.20171 1.65664 1.02728 1.19134 1.02486 1.28628 0.85362 0.90089 1.24820 0.97192 1.00717 0.97631 1.69954 1.16404 1.47525 1.23103 0.86002 0.78390 0.78361 0.82763 1.20426 1.21656 1.21752 1.21825 0.97440 0.93668 0.86722 1.22344 0.96004 1.01103 0.77617 0.87599 1.45905 1.24194 1.58803 1.07392 1.19597 0.82127 0.78177 0.87328 1.90711 1.33335 1.41908 1.74995 1.22376 1.07052 1.00108 0.91252 0.86217 1.23214 0.99391 0.95458 1.00531 1.21584 0.90256 1.00565 0.97142 1.21359 0.95709 1.00581 0.98393 1.21393 1.01347 0.99709 0.94831 0.90290 0.93558 0.94872 0.92008 0.93436 0.93729 0.93206 0.95989 0.77094 0.88086 0.88256 0.91217 0.93506 0.91606 0.92429 0.91727 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.88 101.05 1.10 1.60 16 2 O -0.38 -7.10 10.43 -35.23 -0.37 -7.46 16 3 C 0.06 1.06 3.05 -24.90 -0.08 0.99 16 4 H 0.06 1.04 7.74 -51.93 -0.40 0.63 16 5 C 0.16 4.01 5.15 -3.06 -0.02 4.00 16 6 N -0.60 -15.64 3.39 -170.08 -0.58 -16.22 16 7 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -27.13 10.31 55.49 0.57 -26.56 16 11 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 C 0.13 2.84 6.93 -2.53 -0.02 2.82 16 16 C 0.13 2.57 3.15 -65.78 -0.21 2.37 16 17 H 0.11 2.33 7.54 -51.93 -0.39 1.93 16 18 N -0.71 -10.71 5.20 -51.73 -0.27 -10.98 16 19 C 0.54 8.28 7.59 -10.99 -0.08 8.20 16 20 O -0.53 -10.04 12.74 5.56 0.07 -9.97 16 21 C -0.19 -2.10 5.91 -91.77 -0.54 -2.64 16 22 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 23 C -0.15 -1.45 9.53 -26.69 -0.25 -1.71 16 24 C -0.09 -1.01 2.70 -154.47 -0.42 -1.42 16 25 C -0.10 -1.28 8.09 37.16 0.30 -0.98 16 26 C -0.12 -0.94 9.85 37.16 0.37 -0.57 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.06 1.72 7.29 -51.93 -0.38 1.35 16 31 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.40 4.75 8.57 -40.82 -0.35 4.40 16 36 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.10 1.07 8.05 -51.93 -0.42 0.66 16 38 H 0.07 1.00 7.25 -51.93 -0.38 0.62 16 39 H 0.05 0.48 7.93 -51.93 -0.41 0.07 16 40 H 0.06 0.92 7.02 -51.93 -0.36 0.56 16 41 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 42 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -32.46 347.42 -7.68 -40.15 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.23 Total: 2.80 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.10 Total: 5.73 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.27 Total: -53.75 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.30 Total: -17.44 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.46 -7.68 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081532334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.297 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds