Wall clock time and date at job start Tue Mar 31 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 C 1.52998 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.55658 * 29.33045 * 4 3 2 6 6 C 1.53003 * 117.51748 * 243.62794 * 4 3 2 7 7 C 1.53003 * 60.00166 * 252.52107 * 6 4 3 8 8 H 1.09007 * 117.51762 * 107.47671 * 7 6 4 9 9 C 1.50702 * 117.50047 * 252.50924 * 7 6 4 10 10 O 1.21277 * 119.99761 * 68.62137 * 9 7 6 11 11 N 1.34778 * 119.99980 * 248.61932 * 9 7 6 12 12 C 1.46498 * 119.99670 * 180.02562 * 11 9 7 13 13 H 1.08998 * 110.78007 * 36.78279 * 12 11 9 14 14 C 1.54331 * 110.71876 * 273.54632 * 12 11 9 15 15 N 1.47022 * 107.27112 * 263.83208 * 14 12 11 16 16 C 1.36934 * 125.65085 * 181.02249 * 15 14 12 17 17 H 1.08004 * 119.99615 * 19.71457 * 16 15 14 18 18 C 1.38812 * 120.00349 * 199.72161 * 16 15 14 19 19 N 1.31618 * 119.99966 * 28.44526 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 208.44834 * 18 16 15 21 21 H 1.48506 * 109.46968 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.47234 * 299.99625 * 20 18 16 23 23 H 1.48504 * 109.47071 * 59.99831 * 20 18 16 24 24 C 1.47428 * 108.70233 * 1.28686 * 15 14 12 25 25 C 1.55131 * 104.72191 * 335.55567 * 24 15 14 26 26 H 1.09001 * 111.18991 * 279.19240 * 25 24 15 27 27 O 1.42895 * 110.93808 * 155.29068 * 25 24 15 28 28 H 1.09003 * 109.47207 * 60.00361 * 1 2 3 29 29 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47598 * 300.00170 * 1 2 3 31 31 H 1.09005 * 109.47778 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47629 * 119.99767 * 2 1 3 33 33 H 1.08999 * 109.47034 * 60.00236 * 3 2 1 34 34 H 1.08999 * 109.47221 * 299.99892 * 3 2 1 35 35 H 1.08996 * 117.50056 * 145.03476 * 6 4 3 36 36 H 1.08998 * 117.49779 * 0.02562 * 6 4 3 37 37 H 0.97001 * 119.99608 * 0.02562 * 11 9 7 38 38 H 1.08997 * 109.88432 * 144.41410 * 14 12 11 39 39 H 1.08999 * 109.88232 * 23.24666 * 14 12 11 40 40 H 0.96999 * 120.00174 * 5.65429 * 19 18 16 41 41 H 1.08998 * 110.36805 * 94.48432 * 24 15 14 42 42 H 1.08998 * 110.36899 * 216.80450 * 24 15 14 43 43 H 0.96702 * 114.00172 * 67.95361 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2764 2.0454 1.2166 7 6 4.2765 2.7945 -0.1175 8 1 3.6512 3.6839 -0.1957 9 6 5.5694 2.8388 -0.8906 10 8 6.0118 1.8264 -1.3906 11 7 6.2338 4.0035 -1.0263 12 6 7.4904 4.0466 -1.7783 13 1 7.4511 3.3749 -2.6358 14 6 8.6851 3.6977 -0.8657 15 7 9.2643 4.9665 -0.4008 16 6 10.3565 5.0936 0.4154 17 1 11.0523 4.2740 0.5179 18 6 10.5693 6.2759 1.1111 19 7 9.5468 7.0284 1.4581 20 14 12.3069 6.7987 1.5547 21 1 12.2633 8.0882 2.2900 22 1 12.9326 5.7603 2.4122 23 1 13.1062 6.9636 0.3140 24 6 8.4707 6.0792 -0.9536 25 6 7.8100 5.4959 -2.2303 26 1 8.5050 5.4989 -3.0701 27 8 6.6139 6.2064 -2.5564 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 5.2114 1.5846 1.5351 36 1 3.6511 2.4418 2.0165 37 1 5.8800 4.8131 -0.6260 38 1 9.4294 3.1346 -1.4285 39 1 8.3415 3.1125 -0.0127 40 1 8.6411 6.7186 1.3010 41 1 7.7096 6.3937 -0.2397 42 1 9.1193 6.9164 -1.2113 43 1 6.7635 7.1173 -2.8444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083761939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:20 Heat of formation + Delta-G solvation = -53.723343 kcal Electronic energy + Delta-G solvation = -22528.092039 eV Core-core repulsion = 19188.095211 eV Total energy + Delta-G solvation = -3339.996829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99724 -38.43517 -36.92841 -35.31250 -33.99796 -33.84072 -31.73958 -28.54013 -27.76169 -27.27894 -24.51569 -23.71144 -22.12141 -20.81148 -20.56441 -20.06711 -19.75507 -17.64463 -17.33335 -16.85404 -15.75843 -15.41913 -15.02104 -14.72524 -14.38529 -14.28443 -13.73850 -13.57707 -13.44420 -13.12282 -12.80786 -12.60507 -12.49463 -12.30327 -12.12555 -11.64190 -11.47180 -11.28199 -11.18860 -11.01295 -10.80350 -10.63431 -10.44383 -10.26956 -10.06643 -10.05011 -9.82707 -9.55940 -9.40871 -8.67036 -8.45497 -7.01412 -6.17291 -3.23802 2.73692 3.34416 3.47063 3.50017 3.68145 3.86166 4.27001 4.51491 4.56818 4.71880 4.77406 4.92159 4.97940 5.04795 5.12808 5.21326 5.27233 5.32016 5.36188 5.52767 5.53253 5.59515 5.61028 5.68230 5.68740 5.84053 5.93720 5.98251 6.01143 6.04774 6.07008 6.28224 6.39816 6.58442 6.66998 6.81777 6.96307 7.71731 7.84078 7.87507 8.41886 8.53954 8.93595 9.73411 10.27179 11.14696 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.003490 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.900357 B = 8019.869905 C = 8450.033132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.117 0.883 6 C -0.148 4.148 7 C -0.187 4.187 8 H 0.121 0.879 9 C 0.543 3.457 10 O -0.551 6.551 11 N -0.696 5.696 12 C 0.146 3.854 13 H 0.093 0.907 14 C 0.125 3.875 15 N -0.597 5.597 16 C -0.338 4.338 17 H 0.066 0.934 18 C -0.024 4.024 19 N -0.913 5.913 20 Si 1.065 2.935 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.119 3.881 25 C 0.073 3.927 26 H 0.076 0.924 27 O -0.562 6.562 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.405 0.595 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.268 0.732 41 H 0.035 0.965 42 H 0.053 0.947 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 -6.624 -4.541 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.135 0.865 6 C -0.185 4.185 7 C -0.208 4.208 8 H 0.139 0.861 9 C 0.329 3.671 10 O -0.430 6.430 11 N -0.345 5.345 12 C 0.040 3.960 13 H 0.111 0.889 14 C -0.002 4.002 15 N -0.325 5.325 16 C -0.466 4.466 17 H 0.083 0.917 18 C -0.226 4.226 19 N -0.553 5.553 20 Si 0.895 3.105 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.008 4.008 25 C 0.013 3.987 26 H 0.094 0.906 27 O -0.367 6.367 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.240 0.760 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.622 -6.690 -3.993 15.692 hybrid contribution -0.662 -0.197 -0.577 0.900 sum -14.284 -6.887 -4.570 16.503 Atomic orbital electron populations 1.21780 0.95967 1.01535 1.01744 1.21502 0.95530 0.96608 1.02349 1.21240 0.92085 0.97239 1.02137 1.22429 0.94445 0.95569 1.01337 0.86518 1.23093 1.03092 1.02035 0.90304 1.22275 0.97841 0.98583 1.02139 0.86100 1.19588 0.84495 0.83222 0.79781 1.90656 1.69083 1.33978 1.49287 1.45603 1.23559 1.10872 1.54495 1.21970 0.84085 0.95558 0.94395 0.88945 1.21808 0.92009 0.90666 0.95674 1.44392 1.32923 0.98878 1.56353 1.19733 0.99189 1.04075 1.23580 0.91660 1.25815 1.05397 0.95705 0.95715 1.70803 0.99565 1.42287 1.42667 0.83519 0.74749 0.76233 0.76039 1.21064 1.21911 1.22042 1.22194 0.94724 0.92322 0.91532 1.23484 0.86139 0.91546 0.97520 0.90634 1.86386 1.31662 1.29381 1.89245 0.92785 0.92821 0.92798 0.91819 0.91803 0.91664 0.91468 0.88246 0.87909 0.75964 0.94447 0.94844 0.92134 0.94740 0.92883 0.77409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.72 16 2 C -0.12 -1.02 5.89 -26.73 -0.16 -1.17 16 3 C -0.09 -0.82 5.50 -26.73 -0.15 -0.97 16 4 C -0.12 -1.39 5.25 -90.62 -0.48 -1.87 16 5 H 0.12 1.56 7.60 -51.93 -0.39 1.16 16 6 C -0.15 -1.77 9.88 -26.73 -0.26 -2.03 16 7 C -0.19 -2.47 5.91 -91.77 -0.54 -3.01 16 8 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 9 C 0.54 9.32 7.61 -10.98 -0.08 9.23 16 10 O -0.55 -11.13 15.99 5.56 0.09 -11.05 16 11 N -0.70 -12.05 4.78 -52.03 -0.25 -12.30 16 12 C 0.15 2.72 3.13 -66.10 -0.21 2.51 16 13 H 0.09 1.71 7.70 -51.93 -0.40 1.31 16 14 C 0.12 2.76 6.98 -3.06 -0.02 2.74 16 15 N -0.60 -15.01 3.26 -169.93 -0.55 -15.57 16 16 C -0.34 -9.53 10.00 -15.06 -0.15 -9.68 16 17 H 0.07 1.85 7.97 -52.48 -0.42 1.44 16 18 C -0.02 -0.69 5.10 -17.43 -0.09 -0.77 16 19 N -0.91 -27.04 13.01 55.49 0.72 -26.32 16 20 Si 1.07 25.08 30.00 -169.99 -5.10 19.98 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.12 2.62 5.10 -2.41 -0.01 2.60 16 25 C 0.07 1.29 4.23 -24.47 -0.10 1.19 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 O -0.56 -8.44 12.63 -35.23 -0.45 -8.88 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 37 H 0.41 6.69 8.20 -40.82 -0.33 6.36 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.80 8.04 -51.93 -0.42 0.38 16 40 H 0.27 7.94 6.19 -40.82 -0.25 7.69 16 41 H 0.03 0.82 6.80 -51.93 -0.35 0.46 16 42 H 0.05 1.26 8.08 -51.93 -0.42 0.84 16 43 H 0.38 4.15 9.12 45.56 0.42 4.56 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -32.87 352.51 -8.53 -41.40 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.42 Total: 9.38 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.89 Total: -1.95 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.08 Total: -54.19 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.36 Total: -19.93 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.10 Total: 19.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.87 -8.53 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083761939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.323 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds