Wall clock time and date at job start Tue Mar 31 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 C 1.52998 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.55658 * 29.33045 * 4 3 2 6 6 C 1.53003 * 117.51748 * 243.62794 * 4 3 2 7 7 C 1.53003 * 60.00166 * 252.52107 * 6 4 3 8 8 H 1.09007 * 117.51762 * 107.47671 * 7 6 4 9 9 C 1.50702 * 117.50047 * 252.50924 * 7 6 4 10 10 O 1.21277 * 119.99761 * 68.62137 * 9 7 6 11 11 N 1.34778 * 119.99980 * 248.61932 * 9 7 6 12 12 C 1.46498 * 119.99670 * 180.02562 * 11 9 7 13 13 H 1.08998 * 110.78007 * 36.78279 * 12 11 9 14 14 C 1.54331 * 110.71876 * 273.54632 * 12 11 9 15 15 N 1.47022 * 107.27112 * 263.83208 * 14 12 11 16 16 C 1.36934 * 125.65085 * 181.02249 * 15 14 12 17 17 H 1.08004 * 119.99615 * 19.71457 * 16 15 14 18 18 C 1.38812 * 120.00349 * 199.72161 * 16 15 14 19 19 N 1.31618 * 119.99966 * 28.44526 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 208.44834 * 18 16 15 21 21 H 1.48506 * 109.46968 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.47234 * 299.99625 * 20 18 16 23 23 H 1.48504 * 109.47071 * 59.99831 * 20 18 16 24 24 C 1.47428 * 108.70233 * 1.28686 * 15 14 12 25 25 C 1.55131 * 104.72191 * 335.55567 * 24 15 14 26 26 H 1.09001 * 111.18991 * 279.19240 * 25 24 15 27 27 O 1.42895 * 110.93808 * 155.29068 * 25 24 15 28 28 H 1.09003 * 109.47207 * 60.00361 * 1 2 3 29 29 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47598 * 300.00170 * 1 2 3 31 31 H 1.09005 * 109.47778 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47629 * 119.99767 * 2 1 3 33 33 H 1.08999 * 109.47034 * 60.00236 * 3 2 1 34 34 H 1.08999 * 109.47221 * 299.99892 * 3 2 1 35 35 H 1.08996 * 117.50056 * 145.03476 * 6 4 3 36 36 H 1.08998 * 117.49779 * 0.02562 * 6 4 3 37 37 H 0.97001 * 119.99608 * 0.02562 * 11 9 7 38 38 H 1.08997 * 109.88432 * 144.41410 * 14 12 11 39 39 H 1.08999 * 109.88232 * 23.24666 * 14 12 11 40 40 H 0.96999 * 120.00174 * 5.65429 * 19 18 16 41 41 H 1.08998 * 110.36805 * 94.48432 * 24 15 14 42 42 H 1.08998 * 110.36899 * 216.80450 * 24 15 14 43 43 H 0.96702 * 114.00172 * 67.95361 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2764 2.0454 1.2166 7 6 4.2765 2.7945 -0.1175 8 1 3.6512 3.6839 -0.1957 9 6 5.5694 2.8388 -0.8906 10 8 6.0118 1.8264 -1.3906 11 7 6.2338 4.0035 -1.0263 12 6 7.4904 4.0466 -1.7783 13 1 7.4511 3.3749 -2.6358 14 6 8.6851 3.6977 -0.8657 15 7 9.2643 4.9665 -0.4008 16 6 10.3565 5.0936 0.4154 17 1 11.0523 4.2740 0.5179 18 6 10.5693 6.2759 1.1111 19 7 9.5468 7.0284 1.4581 20 14 12.3069 6.7987 1.5547 21 1 12.2633 8.0882 2.2900 22 1 12.9326 5.7603 2.4122 23 1 13.1062 6.9636 0.3140 24 6 8.4707 6.0792 -0.9536 25 6 7.8100 5.4959 -2.2303 26 1 8.5050 5.4989 -3.0701 27 8 6.6139 6.2064 -2.5564 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 5.2114 1.5846 1.5351 36 1 3.6511 2.4418 2.0165 37 1 5.8800 4.8131 -0.6260 38 1 9.4294 3.1346 -1.4285 39 1 8.3415 3.1125 -0.0127 40 1 8.6411 6.7186 1.3010 41 1 7.7096 6.3937 -0.2397 42 1 9.1193 6.9164 -1.2113 43 1 6.7635 7.1173 -2.8444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083761939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:19 Heat of formation + Delta-G solvation = -76.943632 kcal Electronic energy + Delta-G solvation = -22529.098947 eV Core-core repulsion = 19188.095211 eV Total energy + Delta-G solvation = -3341.003736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37672 -39.86717 -38.07092 -36.86299 -35.47984 -34.74543 -33.61812 -30.26364 -29.25502 -28.29882 -26.34699 -25.06180 -22.88503 -22.42139 -21.82312 -21.36791 -21.09574 -19.63764 -18.65492 -18.22225 -17.17729 -16.65417 -16.24212 -16.10437 -15.73409 -15.60165 -15.40156 -15.24332 -14.74063 -14.26142 -14.19903 -14.04659 -13.77658 -13.40892 -13.13717 -12.95636 -12.92208 -12.69938 -12.57188 -12.22592 -12.01757 -11.92870 -11.90398 -11.75047 -11.68273 -11.22555 -11.08166 -11.00739 -10.80090 -10.56810 -10.16212 -9.09781 -8.38880 -5.43221 1.43015 1.57176 1.63858 1.83830 2.03507 2.57957 2.81532 2.91722 3.13766 3.47038 3.56010 3.62553 3.72780 3.75761 3.83969 4.09595 4.13591 4.18959 4.28713 4.34131 4.36922 4.44424 4.62189 4.70965 4.76084 4.82066 4.86073 4.88685 4.93054 4.97129 5.04807 5.05773 5.20075 5.35397 5.39939 5.43155 5.51746 5.61163 6.24991 6.48964 6.74124 6.81695 7.16947 7.61346 8.17718 8.91844 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.003490 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.900357 B = 8019.869905 C = 8450.033132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.109 4.109 5 H 0.095 0.905 6 C -0.144 4.144 7 C -0.196 4.196 8 H 0.147 0.853 9 C 0.537 3.463 10 O -0.587 6.587 11 N -0.694 5.694 12 C 0.152 3.848 13 H 0.100 0.900 14 C 0.126 3.874 15 N -0.615 5.615 16 C -0.354 4.354 17 H 0.055 0.945 18 C -0.070 4.070 19 N -0.935 5.935 20 Si 1.117 2.883 21 H -0.288 1.288 22 H -0.278 1.278 23 H -0.278 1.278 24 C 0.125 3.875 25 C 0.101 3.899 26 H 0.095 0.905 27 O -0.557 6.557 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.410 0.590 38 H 0.038 0.962 39 H 0.008 0.992 40 H 0.256 0.744 41 H 0.018 0.982 42 H 0.033 0.967 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.842 -6.170 -4.978 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.121 4.121 4 C -0.128 4.128 5 H 0.113 0.887 6 C -0.181 4.181 7 C -0.217 4.217 8 H 0.164 0.836 9 C 0.325 3.675 10 O -0.468 6.468 11 N -0.343 5.343 12 C 0.045 3.955 13 H 0.118 0.882 14 C 0.000 4.000 15 N -0.343 5.343 16 C -0.483 4.483 17 H 0.073 0.927 18 C -0.267 4.267 19 N -0.576 5.576 20 Si 0.941 3.059 21 H -0.214 1.214 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.001 4.001 25 C 0.040 3.960 26 H 0.113 0.887 27 O -0.364 6.364 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.149 0.851 37 H 0.246 0.754 38 H 0.056 0.944 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -14.820 -6.228 -4.451 16.680 hybrid contribution -0.315 -0.389 -0.438 0.665 sum -15.135 -6.617 -4.889 17.227 Atomic orbital electron populations 1.21760 0.94791 1.02062 1.02181 1.21501 0.96527 0.96043 1.01993 1.21245 0.89753 0.97962 1.03097 1.22453 0.96059 0.93838 1.00427 0.88661 1.23178 1.02756 1.01504 0.90697 1.22338 0.96356 1.00485 1.02489 0.83580 1.20308 0.85462 0.82406 0.79314 1.90633 1.70306 1.35052 1.50820 1.45614 1.22999 1.11336 1.54364 1.21798 0.83353 0.96502 0.93814 0.88227 1.21836 0.93452 0.89394 0.95360 1.44599 1.32831 1.00786 1.56128 1.19961 1.00067 1.04110 1.24131 0.92720 1.27202 1.08205 0.95760 0.95561 1.70916 0.99426 1.42810 1.44481 0.82837 0.70693 0.75884 0.76524 1.21414 1.20386 1.20398 1.22145 0.93655 0.91125 0.93199 1.23100 0.86823 0.90314 0.95756 0.88691 1.86359 1.30071 1.31008 1.89008 0.92544 0.92325 0.92143 0.92594 0.91875 0.90109 0.90999 0.90298 0.85136 0.75396 0.94361 0.97406 0.93415 0.96477 0.94841 0.74909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.85 5.89 30.59 0.18 -1.67 16 3 C -0.08 -1.34 5.50 30.60 0.17 -1.17 16 4 C -0.11 -2.44 5.25 -10.79 -0.06 -2.50 16 5 H 0.10 2.57 7.60 -2.39 -0.02 2.55 16 6 C -0.14 -3.29 9.88 30.60 0.30 -2.99 16 7 C -0.20 -4.93 5.91 -11.54 -0.07 -5.00 16 8 H 0.15 2.93 8.14 -2.38 -0.02 2.91 16 9 C 0.54 18.33 7.61 87.66 0.67 19.00 16 10 O -0.59 -24.05 15.99 -3.02 -0.05 -24.10 16 11 N -0.69 -23.71 4.78 -436.92 -2.09 -25.80 16 12 C 0.15 5.58 3.13 46.18 0.14 5.73 16 13 H 0.10 3.59 7.70 -2.39 -0.02 3.57 16 14 C 0.13 5.67 6.98 86.73 0.61 6.27 16 15 N -0.62 -31.47 3.26 -691.53 -2.26 -33.72 16 16 C -0.35 -20.32 10.00 84.03 0.84 -19.48 16 17 H 0.05 3.17 7.97 -2.91 -0.02 3.15 16 18 C -0.07 -4.00 5.10 84.86 0.43 -3.56 16 19 N -0.93 -56.11 13.01 21.65 0.28 -55.82 16 20 Si 1.12 50.56 30.00 68.60 2.06 52.62 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.12 5.53 5.10 86.93 0.44 5.97 16 25 C 0.10 3.39 4.23 32.06 0.14 3.53 16 26 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 27 O -0.56 -15.33 12.63 -148.98 -1.88 -17.22 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.08 7.88 -2.39 -0.02 1.06 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.13 2.25 8.03 -2.39 -0.02 2.23 16 37 H 0.41 13.21 8.20 -92.71 -0.76 12.45 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.01 0.39 8.04 -2.39 -0.02 0.37 16 40 H 0.26 15.54 6.19 -92.71 -0.57 14.97 16 41 H 0.02 0.83 6.80 -2.39 -0.02 0.82 16 42 H 0.03 1.59 8.08 -2.39 -0.02 1.58 16 43 H 0.40 7.58 9.12 -74.06 -0.68 6.90 16 Total: -1.00 -71.95 352.51 0.34 -71.61 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.24 Total: 29.41 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.51 Total: 3.03 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -4.06 Total: -115.35 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.93 Total: -41.31 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.06 Total: 52.62 kcal Total: -71.95 0.34 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083761939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.334 kcal (2) G-P(sol) polarization free energy of solvation -71.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds