Wall clock time and date at job start Tue Mar 31 2020 02:22:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47179 * 2 1
4 4 H 1.09001 * 109.47133 * 304.60703 * 3 2 1
5 5 O 1.42906 * 109.46977 * 64.60241 * 3 2 1
6 6 C 1.42897 * 113.99854 * 208.40727 * 5 3 2
7 7 C 1.50703 * 109.47000 * 184.60227 * 3 2 1
8 8 O 1.21281 * 119.99732 * 244.99669 * 7 3 2
9 9 N 1.34770 * 119.99705 * 65.00300 * 7 3 2
10 10 C 1.47286 * 136.54865 * 359.62449 * 9 7 3
11 11 C 1.54350 * 87.50737 * 151.47608 * 10 9 7
12 12 H 1.09001 * 115.79290 * 141.80886 * 11 10 9
13 13 C 1.53072 * 111.57581 * 274.16981 * 11 10 9
14 14 C 1.53143 * 109.21482 * 142.37608 * 13 11 10
15 15 N 1.46541 * 108.25434 * 301.59963 * 14 13 11
16 16 C 1.36937 * 119.73533 * 236.39768 * 15 14 13
17 17 H 1.08003 * 120.00234 * 27.83346 * 16 15 14
18 18 C 1.38814 * 119.99899 * 207.83262 * 16 15 14
19 19 N 1.31616 * 120.00107 * 12.65456 * 18 16 15
20 20 Si 1.86804 * 119.99677 * 192.66195 * 18 16 15
21 21 H 1.48497 * 109.47161 * 59.99926 * 20 18 16
22 22 H 1.48506 * 109.46673 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.47011 * 299.99564 * 20 18 16
24 24 C 1.45696 * 120.52488 * 56.41075 * 15 14 13
25 25 C 1.46466 * 136.54220 * 179.97438 * 9 7 3
26 26 H 1.09002 * 111.44248 * 97.06369 * 25 9 7
27 27 H 1.09001 * 109.47057 * 54.88366 * 1 2 3
28 28 H 1.08994 * 109.47132 * 174.88479 * 1 2 3
29 29 H 1.08999 * 109.47232 * 294.88572 * 1 2 3
30 30 H 1.08997 * 109.46804 * 239.99963 * 2 1 3
31 31 H 1.08999 * 109.46770 * 120.00109 * 2 1 3
32 32 H 1.08997 * 109.47950 * 304.86219 * 6 5 3
33 33 H 1.09000 * 109.46771 * 64.86253 * 6 5 3
34 34 H 1.09000 * 109.47253 * 184.85587 * 6 5 3
35 35 H 1.08997 * 113.52899 * 266.10720 * 10 9 7
36 36 H 1.09008 * 113.52895 * 36.73178 * 10 9 7
37 37 H 1.09004 * 109.50816 * 22.45779 * 13 11 10
38 38 H 1.08997 * 109.51411 * 262.29960 * 13 11 10
39 39 H 1.08992 * 109.70986 * 181.90531 * 14 13 11
40 40 H 1.09006 * 109.73742 * 61.30311 * 14 13 11
41 41 H 0.97002 * 119.99933 * 179.97438 * 19 18 16
42 42 H 1.09001 * 108.78973 * 199.11308 * 24 15 14
43 43 H 1.09006 * 108.78846 * 80.90433 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6109 1.9796 -0.8458
5 8 1.6540 2.0842 1.2171
6 6 1.4837 3.4981 1.1000
7 6 3.5428 1.4440 -0.1140
8 8 4.2199 1.8629 0.8008
9 7 4.1341 0.9799 -1.2326
10 6 3.6938 0.4031 -2.5143
11 6 4.9786 0.9856 -3.1407
12 1 5.4665 0.3612 -3.8892
13 6 4.7819 2.4386 -3.5800
14 6 6.0634 3.2282 -3.2984
15 7 6.3546 3.1347 -1.8652
16 6 6.4881 4.2779 -1.1233
17 1 5.9697 5.1778 -1.4197
18 6 7.2899 4.2802 0.0099
19 7 8.1119 3.2775 0.2365
20 14 7.2021 5.7063 1.2132
21 1 5.8220 5.8167 1.7500
22 1 8.1502 5.4694 2.3315
23 1 7.5641 6.9660 0.5152
24 6 6.5033 1.8352 -1.2235
25 6 5.5053 0.8156 -1.7205
26 1 5.8663 -0.2003 -1.5601
27 1 -0.3633 0.5912 -0.8406
28 1 -0.3633 -1.0235 -0.0916
29 1 -0.3634 0.4324 0.9322
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8900
32 1 2.3947 3.9419 0.6985
33 1 0.6506 3.7094 0.4296
34 1 1.2757 3.9217 2.0826
35 1 3.6652 -0.6865 -2.5142
36 1 2.7778 0.8501 -2.9009
37 1 3.9538 2.8781 -3.0240
38 1 4.5621 2.4697 -4.6472
39 1 5.9207 4.2722 -3.5771
40 1 6.8897 2.8049 -3.8696
41 1 8.6724 3.2793 1.0282
42 1 6.3741 1.9578 -0.1482
43 1 7.5100 1.4629 -1.4137
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001084225815.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:22:57
Heat of formation + Delta-G solvation = -13.992845 kcal
Electronic energy + Delta-G solvation = -24377.988030 eV
Core-core repulsion = 21039.714045 eV
Total energy + Delta-G solvation = -3338.273985 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.58367 -38.68219 -36.53062 -35.19655 -33.60143 -32.07754 -30.11574 -29.35679
-27.42425 -26.83781 -25.62764 -23.84350 -22.84347 -21.90492 -20.96600 -19.82265
-17.85612 -17.15618 -16.69141 -16.00655 -15.73299 -15.31188 -14.95506 -14.18988
-14.17156 -13.88013 -13.59640 -13.35491 -13.29498 -13.18798 -12.72655 -12.43806
-12.30536 -11.97711 -11.78760 -11.44873 -11.43317 -11.16285 -11.06185 -10.74822
-10.63834 -10.62297 -10.46055 -10.18641 -10.17687 -9.83440 -9.77408 -9.39572
-8.64982 -8.25620 -8.06756 -6.53448 -5.63350 -3.08307 3.16394 3.27792
3.48120 3.54433 3.56881 3.92121 4.61249 4.66299 4.68336 4.89049
4.96553 5.17882 5.26707 5.35559 5.44387 5.48703 5.51567 5.55426
5.60890 5.62528 5.74323 5.76796 5.81100 5.90997 5.96172 6.01578
6.14538 6.16212 6.18099 6.33603 6.39743 6.54154 6.60937 6.79955
7.00971 7.18887 7.52902 7.79891 7.95805 8.37641 8.61208 8.83189
9.38388 10.01985 10.50715 11.44686
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.015382 B = 0.007622 C = 0.005823
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1819.815385 B = 3672.863199 C = 4807.068995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.114 4.114
3 C 0.082 3.918
4 H 0.077 0.923
5 O -0.359 6.359
6 C 0.030 3.970
7 C 0.515 3.485
8 O -0.501 6.501
9 N -0.632 5.632
10 C 0.095 3.905
11 C -0.114 4.114
12 H 0.091 0.909
13 C -0.114 4.114
14 C 0.148 3.852
15 N -0.584 5.584
16 C -0.255 4.255
17 H 0.059 0.941
18 C 0.013 3.987
19 N -0.903 5.903
20 Si 0.902 3.098
21 H -0.284 1.284
22 H -0.291 1.291
23 H -0.285 1.285
24 C 0.169 3.831
25 C 0.118 3.882
26 H 0.071 0.929
27 H 0.052 0.948
28 H 0.056 0.944
29 H 0.062 0.938
30 H 0.078 0.922
31 H 0.075 0.925
32 H 0.052 0.948
33 H 0.037 0.963
34 H 0.086 0.914
35 H 0.077 0.923
36 H 0.069 0.931
37 H 0.058 0.942
38 H 0.054 0.946
39 H 0.055 0.945
40 H 0.019 0.981
41 H 0.253 0.747
42 H 0.099 0.901
43 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.991 -7.503 -6.860 17.295
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.152 4.152
3 C 0.020 3.980
4 H 0.095 0.905
5 O -0.277 6.277
6 C -0.066 4.066
7 C 0.302 3.698
8 O -0.374 6.374
9 N -0.371 5.371
10 C -0.029 4.029
11 C -0.133 4.133
12 H 0.109 0.891
13 C -0.154 4.154
14 C 0.021 3.979
15 N -0.306 5.306
16 C -0.384 4.384
17 H 0.077 0.923
18 C -0.185 4.185
19 N -0.547 5.547
20 Si 0.732 3.268
21 H -0.210 1.210
22 H -0.216 1.216
23 H -0.211 1.211
24 C 0.042 3.958
25 C 0.014 3.986
26 H 0.088 0.912
27 H 0.071 0.929
28 H 0.075 0.925
29 H 0.081 0.919
30 H 0.096 0.904
31 H 0.094 0.906
32 H 0.071 0.929
33 H 0.056 0.944
34 H 0.105 0.895
35 H 0.095 0.905
36 H 0.088 0.912
37 H 0.077 0.923
38 H 0.073 0.927
39 H 0.073 0.927
40 H 0.037 0.963
41 H 0.063 0.937
42 H 0.117 0.883
43 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges -13.639 -7.286 -5.769 16.504
hybrid contribution -0.010 0.767 0.444 0.886
sum -13.649 -6.519 -5.326 16.036
Atomic orbital electron populations
1.21708 0.94705 1.01553 1.02382 1.21542 0.96860 0.93415 1.03347
1.22007 0.91470 0.95660 0.88870 0.90499 1.87922 1.88002 1.20460
1.31266 1.22828 1.00111 0.81214 1.02460 1.20654 0.90094 0.78460
0.80579 1.90794 1.64920 1.44699 1.36956 1.49551 1.10246 1.61806
1.15471 1.23351 0.98551 0.97901 0.83106 1.22808 0.96038 0.97910
0.96573 0.89071 1.21828 1.01076 0.93670 0.98812 1.20727 0.92865
0.97418 0.86864 1.43415 1.83094 1.02173 1.01924 1.18996 1.22321
0.90151 1.06976 0.92288 1.24988 0.95986 0.97502 1.00069 1.69977
1.25028 1.32020 1.27721 0.86390 0.77467 0.81897 0.81075 1.21029
1.21640 1.21139 1.20148 0.92388 0.83209 1.00023 1.22641 0.85251
1.00225 0.90519 0.91156 0.92894 0.92491 0.91870 0.90350 0.90611
0.92921 0.94430 0.89540 0.90503 0.91223 0.92329 0.92712 0.92672
0.96293 0.93729 0.88262 0.95262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.44 9.75 37.16 0.36 -1.07 16
2 C -0.11 -1.40 5.59 -26.73 -0.15 -1.55 16
3 C 0.08 1.28 2.38 -27.88 -0.07 1.21 16
4 H 0.08 1.07 7.85 -51.93 -0.41 0.67 16
5 O -0.36 -6.20 9.51 -55.09 -0.52 -6.72 16
6 C 0.03 0.46 10.78 101.05 1.09 1.55 16
7 C 0.51 10.46 7.24 -10.99 -0.08 10.38 16
8 O -0.50 -13.07 15.75 -14.30 -0.23 -13.30 16
9 N -0.63 -11.42 3.28 -187.58 -0.62 -12.03 16
10 C 0.09 1.21 6.48 -11.41 -0.07 1.14 16
11 C -0.11 -1.71 4.57 -90.17 -0.41 -2.12 16
12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
13 C -0.11 -1.88 5.71 -26.62 -0.15 -2.03 16
14 C 0.15 3.06 6.46 -3.95 -0.03 3.04 16
15 N -0.58 -15.03 3.02 -174.91 -0.53 -15.56 16
16 C -0.25 -7.36 9.49 -15.06 -0.14 -7.50 16
17 H 0.06 1.68 7.85 -52.48 -0.41 1.27 16
18 C 0.01 0.40 4.97 -17.43 -0.09 0.31 16
19 N -0.90 -27.85 11.00 55.49 0.61 -27.23 16
20 Si 0.90 23.61 29.57 -169.99 -5.03 18.58 16
21 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16
22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16
23 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16
24 C 0.17 4.24 4.58 -5.44 -0.02 4.22 16
25 C 0.12 2.26 4.02 -77.72 -0.31 1.94 16
26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
29 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16
30 H 0.08 0.84 6.76 -51.93 -0.35 0.49 16
31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
32 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16
33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.07 0.77 8.07 -51.92 -0.42 0.35 16
37 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16
38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
39 H 0.05 1.13 7.89 -51.93 -0.41 0.72 16
40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
41 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16
42 H 0.10 2.97 5.10 -51.93 -0.26 2.70 16
43 H 0.03 0.80 7.96 -51.93 -0.41 0.38 16
LS Contribution 340.39 15.07 5.13 5.13
Total: -1.00 -35.26 340.39 -8.53 -43.79
By element:
Atomic # 1 Polarization: 5.09 SS G_CDS: -7.27 Total: -2.18 kcal
Atomic # 6 Polarization: 9.60 SS G_CDS: -0.07 Total: 9.53 kcal
Atomic # 7 Polarization: -54.30 SS G_CDS: -0.53 Total: -54.83 kcal
Atomic # 8 Polarization: -19.27 SS G_CDS: -0.75 Total: -20.01 kcal
Atomic # 14 Polarization: 23.61 SS G_CDS: -5.03 Total: 18.58 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -35.26 -8.53 -43.79 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084225815.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.793 kcal
(2) G-P(sol) polarization free energy of solvation -35.260 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds