Wall clock time and date at job start Tue Mar 31 2020 02:22:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47179 * 2 1
4 4 H 1.09001 * 109.47133 * 304.60703 * 3 2 1
5 5 O 1.42906 * 109.46977 * 64.60241 * 3 2 1
6 6 C 1.42897 * 113.99854 * 208.40727 * 5 3 2
7 7 C 1.50703 * 109.47000 * 184.60227 * 3 2 1
8 8 O 1.21281 * 119.99732 * 244.99669 * 7 3 2
9 9 N 1.34770 * 119.99705 * 65.00300 * 7 3 2
10 10 C 1.47286 * 136.54865 * 359.62449 * 9 7 3
11 11 C 1.54350 * 87.50737 * 151.47608 * 10 9 7
12 12 H 1.09001 * 115.79290 * 141.80886 * 11 10 9
13 13 C 1.53072 * 111.57581 * 274.16981 * 11 10 9
14 14 C 1.53143 * 109.21482 * 142.37608 * 13 11 10
15 15 N 1.46541 * 108.25434 * 301.59963 * 14 13 11
16 16 C 1.36937 * 119.73533 * 236.39768 * 15 14 13
17 17 H 1.08003 * 120.00234 * 27.83346 * 16 15 14
18 18 C 1.38814 * 119.99899 * 207.83262 * 16 15 14
19 19 N 1.31616 * 120.00107 * 12.65456 * 18 16 15
20 20 Si 1.86804 * 119.99677 * 192.66195 * 18 16 15
21 21 H 1.48497 * 109.47161 * 59.99926 * 20 18 16
22 22 H 1.48506 * 109.46673 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.47011 * 299.99564 * 20 18 16
24 24 C 1.45696 * 120.52488 * 56.41075 * 15 14 13
25 25 C 1.46466 * 136.54220 * 179.97438 * 9 7 3
26 26 H 1.09002 * 111.44248 * 97.06369 * 25 9 7
27 27 H 1.09001 * 109.47057 * 54.88366 * 1 2 3
28 28 H 1.08994 * 109.47132 * 174.88479 * 1 2 3
29 29 H 1.08999 * 109.47232 * 294.88572 * 1 2 3
30 30 H 1.08997 * 109.46804 * 239.99963 * 2 1 3
31 31 H 1.08999 * 109.46770 * 120.00109 * 2 1 3
32 32 H 1.08997 * 109.47950 * 304.86219 * 6 5 3
33 33 H 1.09000 * 109.46771 * 64.86253 * 6 5 3
34 34 H 1.09000 * 109.47253 * 184.85587 * 6 5 3
35 35 H 1.08997 * 113.52899 * 266.10720 * 10 9 7
36 36 H 1.09008 * 113.52895 * 36.73178 * 10 9 7
37 37 H 1.09004 * 109.50816 * 22.45779 * 13 11 10
38 38 H 1.08997 * 109.51411 * 262.29960 * 13 11 10
39 39 H 1.08992 * 109.70986 * 181.90531 * 14 13 11
40 40 H 1.09006 * 109.73742 * 61.30311 * 14 13 11
41 41 H 0.97002 * 119.99933 * 179.97438 * 19 18 16
42 42 H 1.09001 * 108.78973 * 199.11308 * 24 15 14
43 43 H 1.09006 * 108.78846 * 80.90433 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6109 1.9796 -0.8458
5 8 1.6540 2.0842 1.2171
6 6 1.4837 3.4981 1.1000
7 6 3.5428 1.4440 -0.1140
8 8 4.2199 1.8629 0.8008
9 7 4.1341 0.9799 -1.2326
10 6 3.6938 0.4031 -2.5143
11 6 4.9786 0.9856 -3.1407
12 1 5.4665 0.3612 -3.8892
13 6 4.7819 2.4386 -3.5800
14 6 6.0634 3.2282 -3.2984
15 7 6.3546 3.1347 -1.8652
16 6 6.4881 4.2779 -1.1233
17 1 5.9697 5.1778 -1.4197
18 6 7.2899 4.2802 0.0099
19 7 8.1119 3.2775 0.2365
20 14 7.2021 5.7063 1.2132
21 1 5.8220 5.8167 1.7500
22 1 8.1502 5.4694 2.3315
23 1 7.5641 6.9660 0.5152
24 6 6.5033 1.8352 -1.2235
25 6 5.5053 0.8156 -1.7205
26 1 5.8663 -0.2003 -1.5601
27 1 -0.3633 0.5912 -0.8406
28 1 -0.3633 -1.0235 -0.0916
29 1 -0.3634 0.4324 0.9322
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8900
32 1 2.3947 3.9419 0.6985
33 1 0.6506 3.7094 0.4296
34 1 1.2757 3.9217 2.0826
35 1 3.6652 -0.6865 -2.5142
36 1 2.7778 0.8501 -2.9009
37 1 3.9538 2.8781 -3.0240
38 1 4.5621 2.4697 -4.6472
39 1 5.9207 4.2722 -3.5771
40 1 6.8897 2.8049 -3.8696
41 1 8.6724 3.2793 1.0282
42 1 6.3741 1.9578 -0.1482
43 1 7.5100 1.4629 -1.4137
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001084225815.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:22:57
Heat of formation + Delta-G solvation = -38.874230 kcal
Electronic energy + Delta-G solvation = -24379.066968 eV
Core-core repulsion = 21039.714045 eV
Total energy + Delta-G solvation = -3339.352923 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.98515 -40.04613 -38.03560 -37.05911 -34.68241 -33.91442 -31.92060 -30.84778
-28.85678 -28.29885 -26.86365 -25.68328 -24.34477 -23.04123 -22.45905 -21.24774
-19.54955 -18.74155 -17.95945 -17.63002 -17.28727 -16.91211 -16.24597 -16.09037
-15.64875 -15.35783 -14.94801 -14.91977 -14.66523 -14.49974 -14.24289 -14.00577
-13.62775 -13.34821 -13.13658 -12.95875 -12.74937 -12.68715 -12.54381 -12.36364
-12.26522 -12.07570 -11.98203 -11.76942 -11.75690 -11.49163 -11.45307 -10.97826
-10.60644 -10.04853 -9.50760 -8.65676 -7.87352 -5.34012 1.31415 1.39689
1.42164 1.73919 1.91234 2.45433 2.74217 3.28058 3.43518 3.46906
3.72179 3.84896 3.86076 4.02249 4.22517 4.30801 4.38576 4.43367
4.45876 4.48070 4.56934 4.63108 4.70298 4.73675 4.76807 4.85285
4.87278 4.94748 5.07329 5.07872 5.13425 5.15765 5.32298 5.41716
5.42551 5.54192 5.69615 5.80034 5.99793 6.38288 6.98555 7.17713
7.35227 7.94772 8.33877 9.16469
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.015382 B = 0.007622 C = 0.005823
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1819.815385 B = 3672.863199 C = 4807.068995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.107 4.107
3 C 0.087 3.913
4 H 0.102 0.898
5 O -0.380 6.380
6 C 0.031 3.969
7 C 0.500 3.500
8 O -0.580 6.580
9 N -0.637 5.637
10 C 0.109 3.891
11 C -0.102 4.102
12 H 0.131 0.869
13 C -0.103 4.103
14 C 0.138 3.862
15 N -0.601 5.601
16 C -0.257 4.257
17 H 0.058 0.942
18 C -0.045 4.045
19 N -0.934 5.934
20 Si 0.955 3.045
21 H -0.293 1.293
22 H -0.294 1.294
23 H -0.264 1.264
24 C 0.183 3.817
25 C 0.101 3.899
26 H 0.088 0.912
27 H 0.069 0.931
28 H 0.077 0.923
29 H 0.049 0.951
30 H 0.102 0.898
31 H 0.055 0.945
32 H 0.012 0.988
33 H 0.075 0.925
34 H 0.096 0.904
35 H 0.118 0.882
36 H 0.102 0.898
37 H 0.042 0.958
38 H 0.102 0.898
39 H 0.050 0.950
40 H 0.026 0.974
41 H 0.244 0.756
42 H 0.043 0.957
43 H -0.008 1.008
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.162 -8.869 -10.016 21.760
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.145 4.145
3 C 0.026 3.974
4 H 0.120 0.880
5 O -0.298 6.298
6 C -0.065 4.065
7 C 0.290 3.710
8 O -0.459 6.459
9 N -0.374 5.374
10 C -0.012 4.012
11 C -0.121 4.121
12 H 0.149 0.851
13 C -0.142 4.142
14 C 0.013 3.987
15 N -0.324 5.324
16 C -0.387 4.387
17 H 0.076 0.924
18 C -0.241 4.241
19 N -0.580 5.580
20 Si 0.784 3.216
21 H -0.220 1.220
22 H -0.220 1.220
23 H -0.189 1.189
24 C 0.056 3.944
25 C -0.004 4.004
26 H 0.106 0.894
27 H 0.088 0.912
28 H 0.096 0.904
29 H 0.068 0.932
30 H 0.120 0.880
31 H 0.074 0.926
32 H 0.031 0.969
33 H 0.093 0.907
34 H 0.115 0.885
35 H 0.136 0.864
36 H 0.120 0.880
37 H 0.061 0.939
38 H 0.120 0.880
39 H 0.069 0.931
40 H 0.044 0.956
41 H 0.053 0.947
42 H 0.061 0.939
43 H 0.010 0.990
Dipole moment (debyes) X Y Z Total
from point charges -16.849 -8.668 -9.021 20.986
hybrid contribution 1.019 1.203 1.347 2.074
sum -15.830 -7.465 -7.674 19.110
Atomic orbital electron populations
1.21676 0.92403 1.03166 1.02437 1.21596 0.98670 0.90709 1.03545
1.22225 0.88046 0.98043 0.89074 0.88006 1.87900 1.87768 1.21247
1.32847 1.22898 0.99412 0.80383 1.03844 1.21704 0.92003 0.77219
0.80060 1.90759 1.66934 1.48302 1.39941 1.49734 1.10105 1.61013
1.16501 1.23626 0.98534 1.00152 0.78888 1.22854 0.96975 0.97871
0.94386 0.85117 1.21711 0.97390 0.93585 1.01525 1.20992 0.95522
0.98424 0.83771 1.43660 1.83221 1.01429 1.04116 1.19309 1.20958
0.91224 1.07235 0.92437 1.25704 0.96500 0.99903 1.01965 1.70156
1.26242 1.33811 1.27793 0.85528 0.76583 0.80323 0.79189 1.21988
1.21994 1.18888 1.19731 0.92775 0.84610 0.97263 1.22679 0.84877
0.98780 0.94071 0.89413 0.91204 0.90374 0.93193 0.87966 0.92606
0.96933 0.90667 0.88529 0.86403 0.88019 0.93916 0.87971 0.93148
0.95633 0.94714 0.93862 0.99015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.19 9.75 71.98 0.70 -1.49 16
2 C -0.11 -2.32 5.59 30.60 0.17 -2.15 16
3 C 0.09 2.61 2.38 29.85 0.07 2.68 16
4 H 0.10 2.50 7.85 -2.39 -0.02 2.48 16
5 O -0.38 -13.07 9.51 -129.99 -1.24 -14.30 16
6 C 0.03 0.94 10.78 113.37 1.22 2.16 16
7 C 0.50 20.51 7.24 87.66 0.63 21.14 16
8 O -0.58 -32.31 15.75 15.96 0.25 -32.06 16
9 N -0.64 -21.93 3.28 -865.78 -2.84 -24.77 16
10 C 0.11 2.17 6.48 81.17 0.53 2.70 16
11 C -0.10 -2.59 4.57 -10.50 -0.05 -2.64 16
12 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16
13 C -0.10 -2.98 5.71 30.67 0.17 -2.81 16
14 C 0.14 5.57 6.46 86.42 0.56 6.12 16
15 N -0.60 -31.86 3.02 -707.28 -2.14 -34.00 16
16 C -0.26 -15.44 9.49 84.03 0.80 -14.64 16
17 H 0.06 3.39 7.85 -2.91 -0.02 3.37 16
18 C -0.05 -2.83 4.97 84.86 0.42 -2.41 16
19 N -0.93 -61.33 11.00 21.65 0.24 -61.09 16
20 Si 0.95 50.91 29.57 68.60 2.03 52.93 16
21 H -0.29 -15.86 7.11 99.48 0.71 -15.15 16
22 H -0.29 -15.66 7.11 99.48 0.71 -14.95 16
23 H -0.26 -12.99 7.11 99.48 0.71 -12.29 16
24 C 0.18 9.65 4.58 85.90 0.39 10.04 16
25 C 0.10 3.76 4.02 38.67 0.16 3.92 16
26 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16
27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
29 H 0.05 0.93 7.95 -2.39 -0.02 0.91 16
30 H 0.10 1.69 6.76 -2.39 -0.02 1.67 16
31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
32 H 0.01 0.46 8.07 -2.39 -0.02 0.44 16
33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16
35 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16
36 H 0.10 1.50 8.07 -2.38 -0.02 1.48 16
37 H 0.04 1.38 7.69 -2.38 -0.02 1.36 16
38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16
39 H 0.05 2.03 7.89 -2.39 -0.02 2.02 16
40 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16
41 H 0.24 15.74 8.31 -92.71 -0.77 14.96 16
42 H 0.04 2.77 5.10 -2.39 -0.01 2.76 16
43 H -0.01 -0.46 7.96 -2.38 -0.02 -0.48 16
Total: -1.00 -87.78 340.39 3.06 -84.72
By element:
Atomic # 1 Polarization: 4.98 SS G_CDS: 0.97 Total: 5.96 kcal
Atomic # 6 Polarization: 16.84 SS G_CDS: 5.78 Total: 22.62 kcal
Atomic # 7 Polarization: -115.12 SS G_CDS: -4.74 Total: -119.86 kcal
Atomic # 8 Polarization: -45.38 SS G_CDS: -0.98 Total: -46.37 kcal
Atomic # 14 Polarization: 50.91 SS G_CDS: 2.03 Total: 52.93 kcal
Total: -87.78 3.06 -84.72 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084225815.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.846 kcal
(2) G-P(sol) polarization free energy of solvation -87.776 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.930 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds