Wall clock time and date at job start Tue Mar 31 2020 02:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46876 * 2 1 4 4 H 1.08997 * 109.47854 * 57.86164 * 3 2 1 5 5 O 1.42905 * 109.46871 * 297.85673 * 3 2 1 6 6 C 1.42903 * 113.99396 * 117.06871 * 5 3 2 7 7 C 1.50697 * 109.47039 * 177.86718 * 3 2 1 8 8 O 1.21283 * 120.00866 * 114.99660 * 7 3 2 9 9 N 1.34787 * 119.99718 * 294.99730 * 7 3 2 10 10 C 1.47281 * 136.54029 * 359.97438 * 9 7 3 11 11 C 1.54079 * 87.60555 * 151.39201 * 10 9 7 12 12 H 1.09005 * 115.04792 * 141.63036 * 11 10 9 13 13 C 1.53068 * 111.39189 * 273.97387 * 11 10 9 14 14 C 1.52698 * 109.28249 * 142.28785 * 13 11 10 15 15 N 1.46537 * 108.49168 * 301.79483 * 14 13 11 16 16 C 1.36939 * 119.73800 * 236.40630 * 15 14 13 17 17 H 1.08002 * 120.00396 * 150.07949 * 16 15 14 18 18 C 1.38813 * 119.99495 * 330.06954 * 16 15 14 19 19 N 1.31620 * 119.99730 * 161.39353 * 18 16 15 20 20 Si 1.86795 * 120.00257 * 341.39386 * 18 16 15 21 21 H 1.48497 * 109.47081 * 89.74547 * 20 18 16 22 22 H 1.48493 * 109.47403 * 329.74126 * 20 18 16 23 23 H 1.48511 * 109.46892 * 209.74463 * 20 18 16 24 24 C 1.45700 * 120.52422 * 56.12099 * 15 14 13 25 25 C 1.46462 * 136.54460 * 180.02562 * 9 7 3 26 26 H 1.09008 * 111.43675 * 97.08970 * 25 9 7 27 27 H 1.08994 * 109.46861 * 65.34493 * 1 2 3 28 28 H 1.09006 * 109.46914 * 185.33993 * 1 2 3 29 29 H 1.09000 * 109.47065 * 305.34206 * 1 2 3 30 30 H 1.08995 * 109.46946 * 239.99290 * 2 1 3 31 31 H 1.09005 * 109.46704 * 119.99821 * 2 1 3 32 32 H 1.08997 * 109.47441 * 65.31457 * 6 5 3 33 33 H 1.09005 * 109.46807 * 185.30732 * 6 5 3 34 34 H 1.09004 * 109.47356 * 305.30807 * 6 5 3 35 35 H 1.09005 * 113.53467 * 266.07331 * 10 9 7 36 36 H 1.09002 * 113.53027 * 36.70521 * 10 9 7 37 37 H 1.09002 * 109.51652 * 262.32660 * 13 11 10 38 38 H 1.08997 * 109.51208 * 22.48275 * 13 11 10 39 39 H 1.09000 * 109.62078 * 182.01109 * 14 13 11 40 40 H 1.09003 * 109.55884 * 61.53711 * 14 13 11 41 41 H 0.97000 * 120.00494 * 180.02562 * 19 18 16 42 42 H 1.08997 * 108.78677 * 81.16840 * 24 15 14 43 43 H 1.09008 * 108.78624 * 199.37763 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6458 1.9673 0.8701 5 8 1.6052 2.1014 -1.1912 6 6 0.7332 3.2091 -0.9573 7 6 3.5460 1.4428 0.0529 8 8 4.1857 1.8749 -0.8826 9 7 4.1823 0.9629 1.1399 10 6 3.7940 0.3741 2.4328 11 6 5.1250 -0.4016 2.4060 12 1 5.6227 -0.4976 3.3710 13 6 4.9910 -1.7137 1.6293 14 6 6.2716 -1.9631 0.8358 15 7 6.4904 -0.8263 -0.0626 16 6 6.6153 -1.0393 -1.4096 17 1 6.3005 -0.2782 -2.1082 18 6 7.1466 -2.2335 -1.8770 19 7 6.9402 -2.6024 -3.1235 20 14 8.1545 -3.3170 -0.7371 21 1 7.2563 -4.2714 -0.0389 22 1 8.8507 -2.4695 0.2640 23 1 9.1580 -4.0715 -1.5304 24 6 6.5701 0.5294 0.4651 25 6 5.5721 0.7921 1.5693 26 1 5.8955 1.6139 2.2083 27 1 -0.3633 0.4287 -0.9339 28 1 -0.3633 -1.0233 0.0956 29 1 -0.3633 0.5945 0.8383 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.2754 3.9930 -0.4285 33 1 0.3736 3.5960 -1.9108 34 1 -0.1144 2.8834 -0.3544 35 1 3.7310 1.1024 3.2414 36 1 2.9149 -0.2676 2.3723 37 1 4.8280 -2.5350 2.3271 38 1 4.1473 -1.6457 0.9425 39 1 6.1685 -2.8781 0.2525 40 1 7.1135 -2.0567 1.5218 41 1 7.3111 -3.4370 -3.4501 42 1 7.5748 0.6966 0.8532 43 1 6.3882 1.2335 -0.3470 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084225816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:59 Heat of formation + Delta-G solvation = -5.705292 kcal Electronic energy + Delta-G solvation = -24236.226982 eV Core-core repulsion = 20898.312373 eV Total energy + Delta-G solvation = -3337.914610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85353 -38.82716 -36.88993 -35.54969 -33.46645 -31.86561 -31.08735 -29.60873 -27.79510 -27.15038 -25.72534 -23.60627 -23.33456 -22.06792 -21.15704 -20.12150 -17.91404 -17.22636 -16.82937 -16.40245 -15.64751 -15.52742 -15.21522 -15.10060 -14.29139 -13.95815 -13.68299 -13.53789 -13.50748 -13.32092 -12.84490 -12.59858 -12.42209 -12.16419 -12.02710 -11.76207 -11.51065 -11.49273 -11.28212 -11.07833 -10.88325 -10.78123 -10.62290 -10.22889 -10.00681 -9.86547 -9.56540 -9.36816 -8.86658 -8.58632 -8.26669 -6.82717 -5.81230 -3.19684 2.89897 3.03660 3.35533 3.53279 3.56707 3.87593 4.47485 4.55386 4.61614 4.80810 4.85480 5.01356 5.03905 5.13671 5.20155 5.28118 5.31885 5.37582 5.43040 5.48041 5.56883 5.59333 5.67800 5.69209 5.83460 5.85735 5.93963 6.00266 6.09880 6.20749 6.26602 6.31483 6.38033 6.63497 6.68600 6.85638 6.96284 7.10484 8.11070 8.16191 8.51460 8.62343 9.11732 9.85716 10.18746 11.35107 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.006137 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.894085 B = 4561.185632 C = 4963.374890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.084 3.916 4 H 0.079 0.921 5 O -0.353 6.353 6 C 0.029 3.971 7 C 0.533 3.467 8 O -0.505 6.505 9 N -0.634 5.634 10 C 0.092 3.908 11 C -0.112 4.112 12 H 0.095 0.905 13 C -0.116 4.116 14 C 0.125 3.875 15 N -0.595 5.595 16 C -0.251 4.251 17 H 0.085 0.915 18 C 0.021 3.979 19 N -0.911 5.911 20 Si 0.886 3.114 21 H -0.289 1.289 22 H -0.272 1.272 23 H -0.305 1.305 24 C 0.144 3.856 25 C 0.127 3.873 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.025 0.975 41 H 0.261 0.739 42 H 0.024 0.976 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.630 6.803 15.115 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.023 3.977 4 H 0.097 0.903 5 O -0.270 6.270 6 C -0.067 4.067 7 C 0.320 3.680 8 O -0.378 6.378 9 N -0.372 5.372 10 C -0.032 4.032 11 C -0.131 4.131 12 H 0.113 0.887 13 C -0.155 4.155 14 C -0.001 4.001 15 N -0.319 5.319 16 C -0.379 4.379 17 H 0.103 0.897 18 C -0.177 4.177 19 N -0.555 5.555 20 Si 0.717 3.283 21 H -0.217 1.217 22 H -0.197 1.197 23 H -0.234 1.234 24 C 0.018 3.982 25 C 0.023 3.977 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.313 7.010 14.022 19.934 hybrid contribution 0.404 -0.487 0.933 1.127 sum -11.909 6.524 14.955 20.200 Atomic orbital electron populations 1.21728 0.94988 1.01894 1.01814 1.21859 0.96579 0.94350 1.04226 1.21949 0.91453 0.95317 0.89013 0.90272 1.88079 1.65480 1.45292 1.28185 1.22899 0.92662 0.88775 1.02412 1.20196 0.89278 0.77386 0.81094 1.90747 1.67433 1.44829 1.34756 1.49422 1.09497 1.62866 1.15459 1.23405 0.98954 0.95430 0.85365 1.22810 0.95882 0.95452 0.98987 0.88691 1.21768 1.01386 0.94088 0.98295 1.21176 0.93613 0.92464 0.92818 1.43767 1.83772 1.00032 1.04290 1.18996 1.34951 1.03455 0.80535 0.89713 1.25310 0.99166 0.97819 0.95425 1.69837 1.46842 1.23061 1.15752 0.86938 0.80792 0.80202 0.80352 1.21741 1.19727 1.23373 1.20282 0.93954 0.88597 0.95394 1.22346 0.84114 0.95780 0.95491 0.90346 0.92054 0.92203 0.93231 0.89845 0.90331 0.94209 0.89324 0.94035 0.90257 0.90540 0.92245 0.91348 0.90586 0.95690 0.92944 0.95855 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.72 37.16 0.36 -1.15 16 2 C -0.13 -1.77 5.59 -26.73 -0.15 -1.92 16 3 C 0.08 1.23 2.54 -27.89 -0.07 1.16 16 4 H 0.08 0.90 7.60 -51.93 -0.39 0.51 16 5 O -0.35 -5.69 9.40 -55.09 -0.52 -6.21 16 6 C 0.03 0.32 10.71 101.05 1.08 1.40 16 7 C 0.53 10.02 7.36 -10.98 -0.08 9.94 16 8 O -0.50 -12.20 15.75 -14.31 -0.23 -12.43 16 9 N -0.63 -10.26 3.30 -187.69 -0.62 -10.88 16 10 C 0.09 1.04 7.44 -11.55 -0.09 0.96 16 11 C -0.11 -1.52 4.57 -90.29 -0.41 -1.94 16 12 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 13 C -0.12 -1.94 5.68 -26.85 -0.15 -2.09 16 14 C 0.12 2.71 4.11 -4.18 -0.02 2.69 16 15 N -0.60 -14.75 2.77 -175.15 -0.48 -15.23 16 16 C -0.25 -7.48 9.95 -15.06 -0.15 -7.63 16 17 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 18 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 19 N -0.91 -29.29 13.97 55.49 0.78 -28.51 16 20 Si 0.89 22.96 24.33 -169.99 -4.14 18.82 16 21 H -0.29 -7.11 6.50 56.52 0.37 -6.74 16 22 H -0.27 -6.89 6.82 56.52 0.39 -6.51 16 23 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 24 C 0.14 3.10 6.15 -5.41 -0.03 3.06 16 25 C 0.13 2.07 4.04 -77.66 -0.31 1.76 16 26 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.06 0.67 7.89 -51.93 -0.41 0.26 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 0.95 5.74 -51.93 -0.30 0.66 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.36 8.13 -51.93 -0.42 -0.07 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.77 6.05 -51.93 -0.31 0.46 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.25 7.68 -51.93 -0.40 0.86 16 39 H 0.08 1.84 4.29 -51.93 -0.22 1.61 16 40 H 0.03 0.53 7.25 -51.93 -0.38 0.15 16 41 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.91 6.47 -51.92 -0.34 1.58 16 LS Contribution 331.90 15.07 5.00 5.00 Total: -1.00 -36.71 331.90 -7.33 -44.04 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.01 Total: -1.39 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.11 Total: 6.79 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.33 Total: -54.62 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.74 Total: -18.64 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.14 Total: 18.82 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.71 -7.33 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084225816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.334 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds