Wall clock time and date at job start Tue Mar 31 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 O 1.42899 * 109.47522 * 239.99269 * 2 1 3 5 5 C 1.53001 * 109.46957 * 119.99430 * 2 1 3 6 6 C 1.50693 * 109.47305 * 58.89659 * 5 2 1 7 7 O 1.21291 * 119.99764 * 5.89323 * 6 5 2 8 8 N 1.34774 * 120.00558 * 185.88869 * 6 5 2 9 9 C 1.47288 * 136.53733 * 0.02562 * 8 6 5 10 10 C 1.54081 * 87.60540 * 151.38868 * 9 8 6 11 11 H 1.08997 * 115.04876 * 141.62604 * 10 9 8 12 12 C 1.53070 * 111.39137 * 273.97525 * 10 9 8 13 13 C 1.53150 * 109.21400 * 142.40188 * 12 10 9 14 14 N 1.46537 * 108.25022 * 301.59162 * 13 12 10 15 15 C 1.36940 * 119.73162 * 236.69149 * 14 13 12 16 16 H 1.08003 * 120.00087 * 148.73354 * 15 14 13 17 17 C 1.38810 * 120.00062 * 328.73509 * 15 14 13 18 18 N 1.31623 * 119.99772 * 161.27702 * 17 15 14 19 19 Si 1.86798 * 119.99888 * 341.27141 * 17 15 14 20 20 H 1.48495 * 109.47249 * 94.67274 * 19 17 15 21 21 H 1.48505 * 109.46903 * 214.66786 * 19 17 15 22 22 H 1.48498 * 109.47308 * 334.67219 * 19 17 15 23 23 C 1.45699 * 120.52827 * 56.41126 * 14 13 12 24 24 C 1.46468 * 136.54655 * 180.02562 * 8 6 5 25 25 H 1.08999 * 111.44112 * 97.09432 * 24 8 6 26 26 H 1.08997 * 109.47198 * 300.00730 * 1 2 3 27 27 H 1.09000 * 109.46980 * 60.00510 * 1 2 3 28 28 H 1.09000 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47434 * 175.64649 * 3 2 1 30 30 H 1.09004 * 109.46801 * 295.64157 * 3 2 1 31 31 H 1.08996 * 109.47360 * 55.63742 * 3 2 1 32 32 H 0.96697 * 113.99985 * 300.00519 * 4 2 1 33 33 H 1.09004 * 109.47140 * 298.89932 * 5 2 1 34 34 H 1.09004 * 109.47132 * 178.90160 * 5 2 1 35 35 H 1.09004 * 113.53048 * 266.06334 * 9 8 6 36 36 H 1.08997 * 113.53489 * 36.63587 * 9 8 6 37 37 H 1.09005 * 109.51214 * 262.32293 * 12 10 9 38 38 H 1.08997 * 109.51337 * 22.42748 * 12 10 9 39 39 H 1.08996 * 109.70399 * 181.89782 * 13 12 10 40 40 H 1.08999 * 109.70255 * 61.27518 * 13 12 10 41 41 H 0.96997 * 119.99642 * 179.97438 * 18 17 15 42 42 H 1.08999 * 108.78247 * 80.91529 * 23 14 13 43 43 H 1.09005 * 108.78582 * 199.12066 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0399 -0.7211 1.2493 6 6 1.5154 -2.1338 1.2633 7 8 0.8934 -2.5591 0.3128 8 7 1.7375 -2.9247 2.3317 9 6 2.4168 -2.7985 3.6324 10 6 1.4249 -3.8431 4.1790 11 1 1.8504 -4.5608 4.8804 12 6 0.1272 -3.1854 4.6548 13 6 -1.0560 -4.0915 4.3016 14 7 -1.0587 -4.2981 2.8509 15 6 -2.1697 -3.9704 2.1204 16 1 -2.0646 -3.6318 1.1002 17 6 -3.4308 -4.0733 2.6910 18 7 -4.4489 -3.4318 2.1575 19 14 -3.6832 -5.1222 4.2159 20 1 -3.5864 -4.2674 5.4263 21 1 -5.0250 -5.7565 4.1639 22 1 -2.6390 -6.1767 4.2698 23 6 0.1132 -4.8437 2.1789 24 6 1.4123 -4.2978 2.7240 25 1 2.2411 -4.9766 2.5229 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1272 1.4436 0.0780 30 1 1.7418 1.9333 -0.9265 31 1 1.6143 1.9784 0.8483 32 1 1.7210 -1.5953 -1.2327 33 1 1.6928 -0.1959 2.1392 34 1 3.1298 -0.7382 1.2396 35 1 3.4502 -3.1450 3.6191 36 1 2.3077 -1.8137 4.0867 37 1 0.1663 -3.0420 5.7347 38 1 0.0069 -2.2200 4.1634 39 1 -1.9876 -3.6151 4.6069 40 1 -0.9491 -5.0501 4.8092 41 1 -5.3302 -3.5041 2.5561 42 1 0.1115 -5.9275 2.2949 43 1 0.0509 -4.6066 1.1167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084313007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:44 Heat of formation + Delta-G solvation = -20.207453 kcal Electronic energy + Delta-G solvation = -24282.392048 eV Core-core repulsion = 20943.848577 eV Total energy + Delta-G solvation = -3338.543471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90292 -39.07779 -36.63427 -35.57555 -32.57377 -31.93428 -31.13918 -29.93906 -27.68623 -27.17890 -26.92179 -23.65152 -23.47532 -21.28757 -20.74506 -19.82105 -17.85685 -17.09005 -16.49449 -16.35149 -15.87859 -15.47689 -15.18977 -14.64777 -14.28241 -14.09339 -13.67595 -13.60969 -13.06189 -12.79795 -12.57132 -12.39869 -12.29029 -12.08365 -12.06353 -11.85619 -11.59577 -11.43920 -11.30961 -11.03929 -10.91553 -10.75644 -10.69267 -10.23733 -9.95335 -9.76905 -9.68554 -9.44978 -9.13081 -8.64774 -8.34783 -6.86793 -5.88427 -3.27568 2.92080 3.02133 3.32403 3.49548 3.52491 4.40703 4.44968 4.52550 4.56445 4.78374 4.95256 4.99178 5.11756 5.20248 5.27346 5.37422 5.41822 5.49097 5.52118 5.57686 5.65191 5.76444 5.78766 5.85666 5.94431 5.96945 6.04176 6.15353 6.19913 6.26019 6.31646 6.36153 6.58448 6.63149 6.78445 6.80135 6.91082 7.89494 8.09048 8.12870 8.44559 8.49959 9.05154 9.79186 10.13239 11.27717 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.006480 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.349417 B = 4319.674348 C = 5156.238211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.147 3.853 3 C -0.137 4.137 4 O -0.570 6.570 5 C -0.162 4.162 6 C 0.550 3.450 7 O -0.529 6.529 8 N -0.631 5.631 9 C 0.096 3.904 10 C -0.113 4.113 11 H 0.095 0.905 12 C -0.115 4.115 13 C 0.128 3.872 14 N -0.596 5.596 15 C -0.253 4.253 16 H 0.084 0.916 17 C 0.023 3.977 18 N -0.910 5.910 19 Si 0.883 3.117 20 H -0.291 1.291 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.145 3.855 24 C 0.124 3.876 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.388 0.612 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.023 0.977 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.457 4.582 4.365 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.105 3.895 3 C -0.194 4.194 4 O -0.382 6.382 5 C -0.202 4.202 6 C 0.340 3.660 7 O -0.407 6.407 8 N -0.367 5.367 9 C -0.028 4.028 10 C -0.132 4.132 11 H 0.113 0.887 12 C -0.155 4.155 13 C 0.002 3.998 14 N -0.319 5.319 15 C -0.382 4.382 16 H 0.102 0.898 17 C -0.175 4.175 18 N -0.553 5.553 19 Si 0.714 3.286 20 H -0.218 1.218 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.018 3.982 24 C 0.020 3.980 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.241 0.759 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.176 5.092 3.508 17.317 hybrid contribution -0.405 -1.044 1.197 1.639 sum 15.771 4.048 4.705 16.948 Atomic orbital electron populations 1.22677 0.94653 1.05572 1.01747 1.20817 0.93629 0.91621 0.83390 1.21756 1.01217 0.93839 1.02638 1.86341 1.77236 1.31208 1.43434 1.22408 1.02487 0.93658 1.01660 1.19968 0.79082 0.86593 0.80330 1.90564 1.40816 1.75200 1.34105 1.49448 1.55000 1.15125 1.17098 1.23332 0.96594 1.00358 0.82469 1.22808 0.96588 0.97782 0.96065 0.88686 1.21839 0.94276 1.00137 0.99232 1.21216 0.96733 0.96029 0.85788 1.43763 1.12475 1.73682 1.01961 1.18953 0.82829 1.37826 0.98541 0.89794 1.25338 0.95350 0.98885 0.97956 1.69835 1.00653 1.42685 1.42158 0.86918 0.76459 0.82026 0.83242 1.21840 1.23240 1.19476 1.20280 0.84908 0.94765 0.98244 1.22354 0.99085 0.84202 0.92328 0.90311 0.92422 0.92344 0.88981 0.92302 0.91589 0.91305 0.75856 0.88686 0.88808 0.90153 0.90679 0.92285 0.91501 0.90867 0.95546 0.92911 0.95894 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 8.49 37.16 0.32 -2.79 16 2 C 0.15 2.10 1.11 -90.62 -0.10 2.00 16 3 C -0.14 -1.56 8.84 37.16 0.33 -1.23 16 4 O -0.57 -9.21 12.96 -54.21 -0.70 -9.92 16 5 C -0.16 -2.13 4.84 -27.89 -0.13 -2.27 16 6 C 0.55 9.17 7.48 -10.99 -0.08 9.09 16 7 O -0.53 -10.63 11.00 -13.43 -0.15 -10.78 16 8 N -0.63 -9.60 3.33 -187.67 -0.63 -10.23 16 9 C 0.10 1.06 7.77 -11.53 -0.09 0.97 16 10 C -0.11 -1.50 4.57 -90.30 -0.41 -1.91 16 11 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.12 -1.88 5.70 -26.62 -0.15 -2.03 16 13 C 0.13 2.70 4.14 -3.94 -0.02 2.69 16 14 N -0.60 -14.18 2.74 -174.90 -0.48 -14.66 16 15 C -0.25 -7.26 9.92 -15.06 -0.15 -7.40 16 16 H 0.08 2.69 8.03 -52.48 -0.42 2.27 16 17 C 0.02 0.68 5.22 -17.43 -0.09 0.59 16 18 N -0.91 -28.48 13.97 55.49 0.78 -27.71 16 19 Si 0.88 22.46 24.38 -169.99 -4.14 18.31 16 20 H -0.29 -7.09 6.74 56.52 0.38 -6.71 16 21 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 22 H -0.27 -6.68 6.57 56.52 0.37 -6.31 16 23 C 0.14 2.96 6.15 -5.43 -0.03 2.92 16 24 C 0.12 1.94 4.03 -77.67 -0.31 1.63 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.86 5.64 -51.93 -0.29 1.57 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.39 6.49 6.44 45.56 0.29 6.79 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.74 8.05 -51.93 -0.42 0.33 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 39 H 0.07 1.73 4.58 -51.93 -0.24 1.49 16 40 H 0.03 0.54 7.12 -51.93 -0.37 0.17 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.82 6.47 -51.93 -0.34 1.48 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -33.30 327.07 -7.77 -41.07 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.44 Total: 6.73 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.93 Total: 2.25 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.33 Total: -52.59 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.85 Total: -20.70 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.30 -7.77 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084313007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.860 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds