Wall clock time and date at job start Tue Mar 31 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 C 1.52997 * 109.47036 * 120.00337 * 2 1 3 5 5 H 1.09003 * 109.47035 * 294.07291 * 4 2 1 6 6 O 1.42900 * 109.47356 * 54.07762 * 4 2 1 7 7 C 1.50705 * 109.46606 * 174.07612 * 4 2 1 8 8 O 1.21279 * 120.00284 * 266.15449 * 7 4 2 9 9 N 1.34778 * 119.99750 * 86.15883 * 7 4 2 10 10 C 1.47807 * 135.01328 * 355.28412 * 9 7 4 11 11 C 1.54650 * 85.79599 * 153.80596 * 10 9 7 12 12 H 1.08995 * 114.44123 * 139.83573 * 11 10 9 13 13 C 1.53014 * 110.83764 * 270.23138 * 11 10 9 14 14 C 1.52612 * 109.52592 * 143.76841 * 13 11 10 15 15 N 1.46619 * 108.26493 * 301.23301 * 14 13 11 16 16 C 1.36934 * 119.89061 * 237.28868 * 15 14 13 17 17 H 1.07999 * 119.99916 * 147.54072 * 16 15 14 18 18 C 1.38813 * 120.00064 * 327.54885 * 16 15 14 19 19 N 1.31615 * 120.00280 * 334.71024 * 18 16 15 20 20 Si 1.86804 * 119.99796 * 154.71095 * 18 16 15 21 21 H 1.48500 * 109.47363 * 60.00135 * 20 18 16 22 22 H 1.48498 * 109.47306 * 299.99711 * 20 18 16 23 23 H 1.48502 * 109.46844 * 180.02562 * 20 18 16 24 24 C 1.45684 * 120.21804 * 57.02128 * 15 14 13 25 25 C 1.46819 * 135.01186 * 175.27458 * 9 7 4 26 26 H 1.08998 * 110.91002 * 94.54130 * 25 9 7 27 27 H 1.09004 * 109.46887 * 299.99869 * 1 2 3 28 28 H 1.08997 * 109.47066 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46460 * 240.00276 * 2 1 3 31 31 H 1.08998 * 109.47011 * 186.37653 * 3 2 1 32 32 H 1.08998 * 109.47085 * 306.37400 * 3 2 1 33 33 H 1.08994 * 109.47061 * 66.37854 * 3 2 1 34 34 H 0.96704 * 113.99900 * 59.99774 * 6 4 2 35 35 H 1.08997 * 113.82194 * 39.58442 * 10 9 7 36 36 H 1.09004 * 113.81522 * 268.02046 * 10 9 7 37 37 H 1.09007 * 109.46812 * 263.87895 * 13 11 10 38 38 H 1.08996 * 109.47958 * 23.88970 * 13 11 10 39 39 H 1.08999 * 109.65847 * 181.50747 * 14 13 11 40 40 H 1.09003 * 109.59963 * 60.92423 * 14 13 11 41 41 H 0.96999 * 119.99804 * 354.68146 * 19 18 16 42 42 H 1.08997 * 108.71599 * 82.01904 * 24 15 14 43 43 H 1.09002 * 108.71203 * 200.04503 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7659 -0.1499 2.1360 6 8 1.4536 -2.0225 1.3207 7 6 3.5399 -0.8495 1.1779 8 8 4.0417 -1.8549 0.7215 9 7 4.3238 0.1531 1.6216 10 6 4.0839 1.5155 2.1422 11 6 5.4256 1.3424 2.8916 12 1 6.0537 2.2331 2.9034 13 6 5.2013 0.7253 4.2737 14 6 6.3541 -0.2187 4.6040 15 7 6.4113 -1.2543 3.5676 16 6 6.3193 -2.5751 3.9170 17 1 5.8499 -3.2796 3.2463 18 6 6.8291 -3.0085 5.1331 19 7 7.7997 -2.3378 5.7165 20 14 6.1377 -4.5439 5.9418 21 1 6.3269 -5.7073 5.0385 22 1 4.6890 -4.3539 6.2075 23 1 6.8470 -4.7908 7.2229 24 6 6.5599 -0.8824 2.1669 25 6 5.7698 0.3447 1.7884 26 1 6.1995 0.8404 0.9180 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1240 1.4447 -0.1141 32 1 1.5865 1.9882 -0.8274 33 1 1.7729 1.9223 0.9415 34 1 1.6561 -2.5874 0.5624 35 1 3.2183 1.5892 2.8004 36 1 4.1049 2.2898 1.3752 37 1 5.1528 1.5170 5.0215 38 1 4.2655 0.1665 4.2748 39 1 6.1832 -0.6799 5.5766 40 1 7.2905 0.3391 4.6195 41 1 8.2114 -1.5863 5.2617 42 1 7.6145 -0.6956 1.9646 43 1 6.2297 -1.7159 1.5469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084321895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:10 Heat of formation + Delta-G solvation = -34.997014 kcal Electronic energy + Delta-G solvation = -24249.630856 eV Core-core repulsion = 20910.446062 eV Total energy + Delta-G solvation = -3339.184794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83265 -38.82637 -36.56252 -35.56678 -34.28750 -31.81389 -30.98635 -29.39101 -27.42988 -26.95612 -26.32062 -23.76996 -23.07216 -21.22671 -21.01342 -19.93406 -18.10991 -17.59529 -16.83187 -16.57610 -15.97075 -15.48434 -14.88187 -14.34287 -14.17687 -13.83641 -13.52269 -13.47872 -13.35090 -13.08075 -12.93965 -12.67310 -12.36952 -12.32824 -11.92523 -11.84432 -11.59329 -11.25262 -11.19216 -11.11751 -10.83583 -10.64804 -10.52489 -10.34610 -10.06940 -9.92575 -9.88076 -9.26897 -8.95509 -8.41765 -8.22913 -6.76295 -5.99838 -3.18133 2.87652 3.00809 3.57177 3.59664 3.77864 4.27610 4.39284 4.54800 4.61459 4.67627 4.70061 4.98557 5.09528 5.20412 5.26027 5.29589 5.40973 5.41479 5.44226 5.47894 5.58828 5.61270 5.65708 5.75555 5.82513 5.90269 5.91602 6.04382 6.07813 6.11560 6.35458 6.45692 6.51449 6.73140 6.89545 7.05210 7.20698 7.54672 8.03116 8.21848 8.44861 8.68611 9.23247 9.93997 10.35230 11.28229 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.006075 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.141996 B = 4608.005858 C = 5424.024280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C -0.154 4.154 4 C 0.103 3.897 5 H 0.113 0.887 6 O -0.537 6.537 7 C 0.515 3.485 8 O -0.532 6.532 9 N -0.625 5.625 10 C 0.093 3.907 11 C -0.108 4.108 12 H 0.089 0.911 13 C -0.119 4.119 14 C 0.152 3.848 15 N -0.587 5.587 16 C -0.344 4.344 17 H 0.052 0.948 18 C -0.021 4.021 19 N -0.915 5.915 20 Si 1.062 2.938 21 H -0.292 1.292 22 H -0.294 1.294 23 H -0.286 1.286 24 C 0.144 3.856 25 C 0.130 3.870 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.382 0.618 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.018 0.982 41 H 0.267 0.733 42 H 0.017 0.983 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 12.091 -9.780 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C -0.211 4.211 4 C 0.040 3.960 5 H 0.130 0.870 6 O -0.342 6.342 7 C 0.304 3.696 8 O -0.409 6.409 9 N -0.362 5.362 10 C -0.030 4.030 11 C -0.127 4.127 12 H 0.107 0.893 13 C -0.159 4.159 14 C 0.026 3.974 15 N -0.311 5.311 16 C -0.473 4.473 17 H 0.070 0.930 18 C -0.223 4.223 19 N -0.555 5.555 20 Si 0.892 3.108 21 H -0.219 1.219 22 H -0.221 1.221 23 H -0.211 1.211 24 C 0.017 3.983 25 C 0.026 3.974 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.739 10.592 -8.195 17.809 hybrid contribution 0.127 0.887 -2.069 2.255 sum -11.612 11.479 -10.264 19.286 Atomic orbital electron populations 1.21736 0.93677 1.02617 1.01650 1.21719 0.97347 0.97106 0.97784 1.22034 1.01645 0.95123 1.02321 1.21855 0.88714 0.85804 0.99582 0.86969 1.86589 1.73559 1.24430 1.49663 1.20972 0.89281 0.82452 0.76892 1.90697 1.75465 1.29463 1.45269 1.49879 1.08654 1.13886 1.63755 1.23719 0.99210 0.83962 0.96072 1.22900 0.95685 0.98012 0.96102 0.89330 1.21832 1.01971 0.98853 0.93200 1.20721 0.93167 0.89187 0.94331 1.43519 1.85325 1.02751 0.99499 1.19947 1.35950 0.84599 1.06823 0.93025 1.25831 0.95392 1.03764 0.97322 1.70788 1.19891 1.22220 1.42592 0.83568 0.75672 0.75325 0.76237 1.21944 1.22109 1.21137 1.20154 0.95001 0.94664 0.88467 1.22402 0.81828 0.97112 0.96016 0.90693 0.92465 0.92593 0.91775 0.90558 0.91963 0.92076 0.92042 0.76879 0.90340 0.89885 0.92506 0.92027 0.90247 0.96366 0.92218 0.96577 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.98 37.16 0.33 -0.92 16 2 C -0.12 -1.27 2.66 -90.62 -0.24 -1.51 16 3 C -0.15 -1.37 7.48 37.16 0.28 -1.10 16 4 C 0.10 1.45 2.79 -27.88 -0.08 1.37 16 5 H 0.11 1.51 7.89 -51.93 -0.41 1.10 16 6 O -0.54 -8.25 12.26 -53.62 -0.66 -8.91 16 7 C 0.52 9.23 6.65 -10.98 -0.07 9.15 16 8 O -0.53 -11.83 15.61 -12.83 -0.20 -12.03 16 9 N -0.62 -10.12 2.84 -173.97 -0.49 -10.62 16 10 C 0.09 1.11 5.44 -3.00 -0.02 1.09 16 11 C -0.11 -1.58 4.40 -89.97 -0.40 -1.97 16 12 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.12 -2.12 5.64 -26.92 -0.15 -2.27 16 14 C 0.15 3.50 4.70 -4.18 -0.02 3.48 16 15 N -0.59 -15.16 2.80 -175.37 -0.49 -15.65 16 16 C -0.34 -10.16 9.35 -15.06 -0.14 -10.30 16 17 H 0.05 1.63 7.93 -52.49 -0.42 1.21 16 18 C -0.02 -0.62 4.61 -17.43 -0.08 -0.70 16 19 N -0.92 -27.86 12.53 55.49 0.70 -27.16 16 20 Si 1.06 26.61 29.99 -169.99 -5.10 21.51 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C 0.14 3.26 6.19 -5.60 -0.03 3.23 16 25 C 0.13 2.25 4.22 -69.59 -0.29 1.95 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.61 7.54 -51.93 -0.39 0.22 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.62 5.63 -51.93 -0.29 0.33 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.49 7.53 -51.93 -0.39 0.10 16 34 H 0.38 5.09 8.63 45.56 0.39 5.48 16 35 H 0.08 0.84 7.81 -51.93 -0.41 0.44 16 36 H 0.08 0.75 6.98 -51.93 -0.36 0.39 16 37 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.06 1.20 7.69 -51.93 -0.40 0.80 16 39 H 0.08 2.08 6.41 -51.93 -0.33 1.75 16 40 H 0.02 0.42 8.01 -51.93 -0.42 0.00 16 41 H 0.27 8.17 7.02 -40.82 -0.29 7.88 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 1.82 6.41 -51.93 -0.33 1.48 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -34.72 331.07 -8.39 -43.11 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.22 Total: 3.24 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.91 Total: 1.51 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.29 Total: -53.43 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.86 Total: -20.93 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -5.10 Total: 21.51 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.72 -8.39 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084321895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.117 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds