Wall clock time and date at job start Tue Mar 31 2020 02:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47076 * 2 1 4 4 H 1.09000 * 109.99968 * 54.06479 * 3 2 1 5 5 C 1.54323 * 109.88476 * 292.96885 * 3 2 1 6 6 H 1.09004 * 110.71819 * 336.93451 * 5 3 2 7 7 N 1.46502 * 110.71991 * 100.02631 * 5 3 2 8 8 C 1.34781 * 120.00235 * 205.00485 * 7 5 3 9 9 O 1.21288 * 119.99507 * 359.97438 * 8 7 5 10 10 C 1.50695 * 120.00141 * 179.97438 * 8 7 5 11 11 H 1.09007 * 110.27691 * 305.63528 * 10 8 7 12 12 C 1.54941 * 110.30959 * 67.83236 * 10 8 7 13 13 C 1.55312 * 100.94263 * 155.36040 * 12 10 8 14 14 C 1.54384 * 102.25073 * 325.86681 * 13 12 10 15 15 O 1.43242 * 107.58890 * 21.35461 * 14 13 12 16 16 C 1.55146 * 102.94706 * 218.39015 * 5 3 2 17 17 C 1.54695 * 101.68003 * 35.33615 * 16 5 3 18 18 N 1.47021 * 109.88238 * 175.16374 * 3 2 1 19 19 C 1.36937 * 125.65048 * 298.31655 * 18 3 2 20 20 H 1.08007 * 119.99697 * 348.05921 * 19 18 3 21 21 C 1.38810 * 120.00362 * 168.32613 * 19 18 3 22 22 N 1.31619 * 119.99948 * 359.73163 * 21 19 18 23 23 Si 1.86798 * 120.00250 * 179.72600 * 21 19 18 24 24 H 1.48505 * 109.47074 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46985 * 120.00097 * 23 21 19 26 26 H 1.48494 * 109.47577 * 240.00273 * 23 21 19 27 27 H 1.08997 * 109.47491 * 305.45158 * 1 2 3 28 28 H 1.09001 * 109.47474 * 65.45100 * 1 2 3 29 29 H 1.08999 * 109.47036 * 185.45255 * 1 2 3 30 30 H 1.09004 * 109.47315 * 240.00486 * 2 1 3 31 31 H 1.09005 * 109.47546 * 119.99906 * 2 1 3 32 32 H 0.96998 * 119.99946 * 25.00129 * 7 5 3 33 33 H 1.08998 * 111.12416 * 273.27894 * 12 10 8 34 34 H 1.08997 * 111.12731 * 37.44355 * 12 10 8 35 35 H 1.08997 * 110.84717 * 207.67250 * 13 12 10 36 36 H 1.09002 * 111.01932 * 84.13551 * 13 12 10 37 37 H 1.09000 * 109.82593 * 261.84402 * 14 13 12 38 38 H 1.08999 * 109.82796 * 140.86707 * 14 13 12 39 39 H 1.09001 * 111.00916 * 153.57479 * 16 5 3 40 40 H 1.09004 * 111.00647 * 277.42861 * 16 5 3 41 41 H 1.08995 * 110.39439 * 204.36990 * 17 16 5 42 42 H 1.08994 * 110.23428 * 82.10829 * 17 16 5 43 43 H 0.97000 * 120.00560 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5975 1.9944 0.8293 5 6 1.6810 2.1262 -1.3362 6 1 1.5266 1.3842 -2.1197 7 7 0.4937 2.9708 -1.1837 8 6 -0.2789 3.2468 -2.2530 9 8 0.0091 2.7962 -3.3416 10 6 -1.5004 4.1152 -2.0960 11 1 -2.1503 3.7158 -1.3174 12 6 -1.0865 5.5700 -1.7601 13 6 -2.3244 6.3549 -2.2737 14 6 -2.7555 5.5210 -3.4994 15 8 -2.2113 4.2054 -3.3410 16 6 2.9350 2.9903 -1.6324 17 6 4.0702 2.0921 -1.0869 18 7 3.5055 1.4547 0.1166 19 6 4.2264 0.9613 1.1711 20 1 3.7252 0.6937 2.0897 21 6 5.6019 0.8102 1.0614 22 7 6.2125 1.1362 -0.0580 23 14 6.5862 0.1442 2.5026 24 1 5.6710 -0.1450 3.6357 25 1 7.2781 -1.1048 2.0944 26 1 7.5921 1.1525 2.9231 27 1 -0.3634 0.5960 0.8371 28 1 -0.3634 0.4270 -0.9348 29 1 -0.3633 -1.0230 0.0976 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.2636 3.3314 -0.3131 33 1 -0.9549 5.7030 -0.6863 34 1 -0.1861 5.8576 -2.3029 35 1 -2.0467 7.3661 -2.5708 36 1 -3.1134 6.3761 -1.5220 37 1 -2.3664 5.9749 -4.4108 38 1 -3.8432 5.4680 -3.5464 39 1 3.0488 3.1596 -2.7032 40 1 2.8950 3.9355 -1.0910 41 1 4.9391 2.6955 -0.8243 42 1 4.3407 1.3367 -1.8246 43 1 7.1738 1.0310 -0.1346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087494911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:21 Heat of formation + Delta-G solvation = -63.481017 kcal Electronic energy + Delta-G solvation = -23262.229852 eV Core-core repulsion = 19921.809899 eV Total energy + Delta-G solvation = -3340.419953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32614 -38.83547 -37.39375 -34.05541 -32.83748 -32.35256 -31.71191 -30.05690 -28.79193 -26.53238 -24.64429 -23.51594 -22.08515 -21.93829 -20.50599 -20.15066 -19.48291 -17.59921 -16.91920 -16.74064 -15.83211 -15.51891 -14.89303 -14.66015 -14.60853 -14.00049 -13.79672 -13.60728 -13.40976 -13.17384 -12.70153 -12.23516 -12.01284 -11.98387 -11.89318 -11.66659 -11.63810 -11.22535 -11.13596 -10.90115 -10.84228 -10.62418 -10.44591 -10.27147 -10.06449 -10.01705 -9.73887 -9.64910 -9.31383 -8.65318 -8.56463 -6.83462 -5.74873 -3.11429 2.72976 3.01701 3.37838 3.43708 3.46048 3.84630 4.14820 4.46383 4.52186 4.62320 4.85222 4.86276 5.07235 5.29001 5.35720 5.36804 5.40304 5.51035 5.52335 5.54320 5.56297 5.75904 5.78942 5.80689 5.86392 6.06218 6.22814 6.30975 6.41898 6.46766 6.56783 6.66507 6.68126 6.77193 6.94850 7.15430 7.52583 7.59172 7.73128 7.79253 8.25658 8.42914 9.17467 9.78627 10.45505 11.36181 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030876 B = 0.003939 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.638398 B = 7107.117008 C = 7401.107799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.094 0.906 7 N -0.711 5.711 8 C 0.511 3.489 9 O -0.523 6.523 10 C 0.064 3.936 11 H 0.095 0.905 12 C -0.145 4.145 13 C -0.154 4.154 14 C 0.048 3.952 15 O -0.355 6.355 16 C -0.156 4.156 17 C 0.172 3.828 18 N -0.595 5.595 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.917 5.917 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.397 0.603 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.025 0.975 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.580 9.416 -1.385 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.034 3.966 6 H 0.112 0.888 7 N -0.363 5.363 8 C 0.295 3.705 9 O -0.398 6.398 10 C 0.003 3.997 11 H 0.113 0.887 12 C -0.183 4.183 13 C -0.192 4.192 14 C -0.029 4.029 15 O -0.273 6.273 16 C -0.196 4.196 17 C 0.047 3.953 18 N -0.319 5.319 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.564 5.564 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.154 8.868 -2.294 18.570 hybrid contribution 0.453 -0.054 1.287 1.365 sum -15.700 8.814 -1.007 18.033 Atomic orbital electron populations 1.21766 0.97240 1.00536 1.00902 1.22020 0.93626 0.99152 1.02408 1.21070 0.87158 0.93426 0.93024 0.94749 1.22129 0.83165 0.92443 0.98860 0.88770 1.45982 1.27499 1.52123 1.10737 1.20319 0.83992 0.81345 0.84838 1.90721 1.71771 1.51494 1.25842 1.22857 0.92563 0.95961 0.88334 0.88740 1.23247 0.99344 0.92611 1.03133 1.23127 0.97802 1.00213 0.98020 1.23202 0.98440 0.82931 0.98297 1.88541 1.70495 1.30409 1.37843 1.23389 0.96746 0.99107 1.00350 1.21445 0.93179 0.93213 0.87492 1.44466 0.98512 1.69052 1.19917 1.19001 0.89297 1.35955 0.91206 0.90583 1.24868 0.96858 1.01199 0.97238 1.69936 1.08683 1.52999 1.24773 0.86073 0.80076 0.78370 0.81392 1.20475 1.21709 1.21776 0.93457 0.93314 0.93664 0.92391 0.91660 0.76928 0.88883 0.89550 0.89632 0.90163 0.91071 0.91104 0.91945 0.92073 0.90259 0.95665 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.64 37.15 0.36 -1.82 16 2 C -0.13 -2.46 5.43 -26.73 -0.15 -2.60 16 3 C 0.16 3.16 2.92 -66.95 -0.20 2.96 16 4 H 0.03 0.65 7.72 -51.93 -0.40 0.25 16 5 C 0.14 2.49 2.09 -66.10 -0.14 2.35 16 6 H 0.09 1.88 7.17 -51.93 -0.37 1.51 16 7 N -0.71 -10.10 4.95 -52.03 -0.26 -10.36 16 8 C 0.51 7.80 7.17 -10.99 -0.08 7.72 16 9 O -0.52 -10.51 16.20 -13.77 -0.22 -10.73 16 10 C 0.06 0.74 3.86 -26.86 -0.10 0.63 16 11 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 12 C -0.15 -1.25 6.56 -24.48 -0.16 -1.41 16 13 C -0.15 -1.06 7.02 -24.78 -0.17 -1.23 16 14 C 0.05 0.44 7.79 37.88 0.30 0.73 16 15 O -0.35 -4.82 10.61 -54.56 -0.58 -5.40 16 16 C -0.16 -3.04 6.76 -24.70 -0.17 -3.20 16 17 C 0.17 4.13 5.45 -2.64 -0.01 4.12 16 18 N -0.59 -14.55 3.13 -162.71 -0.51 -15.06 16 19 C -0.23 -6.06 9.73 -15.06 -0.15 -6.21 16 20 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 21 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 22 N -0.92 -26.46 10.48 55.49 0.58 -25.88 16 23 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.74 7.47 -51.93 -0.39 0.35 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.16 8.03 -51.93 -0.42 0.74 16 31 H 0.06 1.29 7.85 -51.93 -0.41 0.89 16 32 H 0.40 4.51 8.37 -40.82 -0.34 4.17 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.85 8.05 -51.93 -0.42 0.44 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.08 2.11 6.74 -51.93 -0.35 1.76 16 42 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -32.56 343.20 -8.89 -41.46 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.29 Total: 2.34 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.77 Total: 1.81 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.19 Total: -51.29 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.80 Total: -16.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.56 -8.89 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087494911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.022 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds