Wall clock time and date at job start Tue Mar 31 2020 02:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 H 1.09001 * 109.99949 * 56.20066 * 3 2 1 5 5 C 1.54327 * 109.88303 * 295.10753 * 3 2 1 6 6 H 1.09005 * 110.86995 * 336.82766 * 5 3 2 7 7 N 1.46495 * 110.72053 * 100.02611 * 5 3 2 8 8 C 1.34780 * 120.00205 * 199.97796 * 7 5 3 9 9 O 1.21275 * 119.99620 * 359.97438 * 8 7 5 10 10 C 1.50696 * 119.99772 * 179.72575 * 8 7 5 11 11 H 1.08999 * 109.82930 * 55.70162 * 10 8 7 12 12 C 1.54380 * 109.83141 * 294.80912 * 10 8 7 13 13 C 1.55452 * 102.18584 * 219.18500 * 12 10 8 14 14 C 1.54942 * 100.99064 * 34.04209 * 13 12 10 15 15 O 1.43243 * 109.82722 * 176.58580 * 10 8 7 16 16 C 1.55153 * 102.94007 * 218.39005 * 5 3 2 17 17 C 1.54910 * 101.58535 * 35.50331 * 16 5 3 18 18 N 1.47016 * 109.87934 * 177.30050 * 3 2 1 19 19 C 1.36941 * 125.65034 * 298.31674 * 18 3 2 20 20 H 1.08000 * 120.00034 * 348.12478 * 19 18 3 21 21 C 1.38815 * 119.99924 * 168.11236 * 19 18 3 22 22 N 1.31619 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99648 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46959 * 90.00619 * 23 21 19 25 25 H 1.48503 * 109.46789 * 210.00334 * 23 21 19 26 26 H 1.48499 * 109.47367 * 330.00590 * 23 21 19 27 27 H 1.09005 * 109.47459 * 65.49491 * 1 2 3 28 28 H 1.08995 * 109.47366 * 185.50139 * 1 2 3 29 29 H 1.09008 * 109.47085 * 305.50080 * 1 2 3 30 30 H 1.08999 * 109.46900 * 240.00169 * 2 1 3 31 31 H 1.08996 * 109.47202 * 120.00292 * 2 1 3 32 32 H 0.97001 * 119.99652 * 19.97750 * 7 5 3 33 33 H 1.09002 * 110.84880 * 337.32428 * 12 10 8 34 34 H 1.09000 * 110.84431 * 100.94387 * 12 10 8 35 35 H 1.09003 * 111.05750 * 276.12168 * 13 12 10 36 36 H 1.08997 * 111.14442 * 151.99566 * 13 12 10 37 37 H 1.09003 * 110.31309 * 204.69070 * 14 13 12 38 38 H 1.08995 * 110.39490 * 82.55956 * 14 13 12 39 39 H 1.09008 * 111.00279 * 153.57762 * 16 5 3 40 40 H 1.08993 * 111.00696 * 277.42303 * 16 5 3 41 41 H 1.09001 * 110.36502 * 81.82506 * 17 16 5 42 42 H 1.08991 * 110.36893 * 204.15046 * 17 16 5 43 43 H 0.97005 * 119.99491 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6271 1.9839 0.8512 5 6 1.6344 2.1426 -1.3141 6 1 1.4536 1.4127 -2.1033 7 7 0.4535 2.9851 -1.1095 8 6 -0.2993 3.3578 -2.1635 9 8 0.0012 2.9960 -3.2814 10 6 -1.5176 4.2192 -1.9522 11 1 -1.2383 5.1318 -1.4256 12 6 -2.5718 3.4437 -1.1335 13 6 -3.8993 3.8681 -1.8220 14 6 -3.4358 4.0128 -3.2934 15 8 -2.1051 4.5484 -3.2165 16 6 2.8776 3.0106 -1.6435 17 6 4.0311 2.1010 -1.1520 18 7 3.5087 1.4535 0.0651 19 6 4.2661 0.9471 1.0874 20 1 3.7974 0.6670 2.0193 21 6 5.6362 0.7934 0.9259 22 7 6.2075 1.1349 -0.2096 23 14 6.6693 0.1019 2.3203 24 1 6.7399 -1.3763 2.1980 25 1 8.0394 0.6705 2.2503 26 1 6.0498 0.4619 3.6210 27 1 -0.3634 0.4263 -0.9351 28 1 -0.3634 -1.0229 0.0985 29 1 -0.3634 0.5968 0.8367 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.2134 3.2747 -0.2154 33 1 -2.4165 2.3683 -1.2205 34 1 -2.5580 3.7555 -0.0891 35 1 -4.2584 4.8188 -1.4279 36 1 -4.6587 3.0924 -1.7239 37 1 -4.0897 4.7000 -3.8303 38 1 -3.4242 3.0403 -3.7854 39 1 2.9537 3.1933 -2.7154 40 1 2.8568 3.9490 -1.0894 41 1 4.2715 1.3521 -1.9067 42 1 4.9113 2.6988 -0.9157 43 1 7.1650 1.0279 -0.3222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087494912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:22 Heat of formation + Delta-G solvation = -63.752554 kcal Electronic energy + Delta-G solvation = -23363.585555 eV Core-core repulsion = 20023.153827 eV Total energy + Delta-G solvation = -3340.431728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37513 -38.78650 -37.34261 -34.05363 -32.83230 -32.37013 -31.68423 -30.03913 -28.77016 -26.51450 -24.63294 -23.51883 -22.08914 -21.99795 -20.48852 -20.10756 -19.47264 -17.53640 -16.91492 -16.67813 -15.91560 -15.80215 -14.80925 -14.60582 -14.35314 -13.99466 -13.83414 -13.67179 -13.31782 -13.17994 -12.72854 -12.22160 -12.07694 -11.94678 -11.84482 -11.64410 -11.55397 -11.28122 -11.14599 -10.88988 -10.85164 -10.61122 -10.44640 -10.35029 -10.16855 -10.07263 -9.73628 -9.64290 -9.18303 -8.64798 -8.55669 -6.83242 -5.74267 -3.11043 2.76145 3.13530 3.38442 3.43577 3.45460 3.77722 4.14845 4.46444 4.51819 4.63636 4.85174 4.90167 5.13419 5.29969 5.34813 5.35982 5.43250 5.50174 5.52657 5.53901 5.55611 5.71711 5.78535 5.80127 5.85392 6.03550 6.23022 6.31347 6.39437 6.45262 6.57845 6.66732 6.70700 6.76017 6.93083 7.15272 7.53775 7.59689 7.75428 7.80113 8.26446 8.45412 9.17828 9.78994 10.45997 11.36577 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.003997 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.030695 B = 7003.034506 C = 7438.922800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.139 3.861 6 H 0.091 0.909 7 N -0.713 5.713 8 C 0.498 3.502 9 O -0.526 6.526 10 C 0.064 3.936 11 H 0.105 0.895 12 C -0.146 4.146 13 C -0.154 4.154 14 C 0.047 3.953 15 O -0.353 6.353 16 C -0.156 4.156 17 C 0.172 3.828 18 N -0.595 5.595 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.080 0.920 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.114 5.244 -0.356 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.109 0.891 7 N -0.365 5.365 8 C 0.283 3.717 9 O -0.401 6.401 10 C 0.003 3.997 11 H 0.122 0.878 12 C -0.184 4.184 13 C -0.192 4.192 14 C -0.029 4.029 15 O -0.270 6.270 16 C -0.196 4.196 17 C 0.047 3.953 18 N -0.319 5.319 19 C -0.356 4.356 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.564 5.564 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.098 0.902 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.539 5.060 -1.313 19.262 hybrid contribution 0.421 -0.461 1.288 1.431 sum -18.118 4.599 -0.025 18.692 Atomic orbital electron populations 1.21772 0.97337 1.00477 1.00818 1.22022 0.93549 0.99237 1.02403 1.21053 0.87058 0.93270 0.93230 0.94752 1.22089 0.83526 0.92347 0.98554 0.89148 1.46055 1.28337 1.52672 1.09448 1.20859 0.84437 0.81181 0.85254 1.90707 1.71120 1.54702 1.23564 1.22662 0.92652 0.98184 0.86209 0.87753 1.23153 0.93399 1.01534 1.00323 1.23299 0.97586 1.02783 0.95540 1.23458 0.83520 0.99493 0.96436 1.88528 1.28425 1.75518 1.34557 1.23426 0.96728 0.99051 1.00416 1.21495 0.93419 0.92972 0.87433 1.44464 0.98329 1.68376 1.20759 1.18952 0.89132 1.35595 0.91906 0.90651 1.24873 0.96998 1.01119 0.97139 1.69931 1.10086 1.52542 1.23799 0.86146 0.79777 0.78788 0.81183 1.21554 1.21683 1.20671 0.93384 0.93696 0.93439 0.92359 0.91737 0.76984 0.89743 0.88913 0.90032 0.89562 0.89362 0.91925 0.91891 0.92056 0.95689 0.90215 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.57 37.16 0.36 -1.71 16 2 C -0.13 -2.41 5.41 -26.73 -0.14 -2.55 16 3 C 0.16 3.16 2.94 -66.95 -0.20 2.97 16 4 H 0.03 0.65 7.69 -51.93 -0.40 0.25 16 5 C 0.14 2.52 1.92 -66.10 -0.13 2.39 16 6 H 0.09 1.80 7.34 -51.93 -0.38 1.42 16 7 N -0.71 -10.17 4.91 -52.03 -0.26 -10.43 16 8 C 0.50 7.59 7.03 -10.99 -0.08 7.52 16 9 O -0.53 -10.51 16.25 -14.09 -0.23 -10.74 16 10 C 0.06 0.74 3.94 -27.16 -0.11 0.63 16 11 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 12 C -0.15 -1.18 6.53 -24.71 -0.16 -1.34 16 13 C -0.15 -1.06 7.16 -24.40 -0.17 -1.24 16 14 C 0.05 0.45 7.78 38.18 0.30 0.74 16 15 O -0.35 -4.76 10.56 -54.88 -0.58 -5.34 16 16 C -0.16 -3.13 6.77 -24.58 -0.17 -3.30 16 17 C 0.17 4.19 5.46 -2.53 -0.01 4.17 16 18 N -0.59 -14.62 3.13 -162.57 -0.51 -15.13 16 19 C -0.23 -6.12 9.77 -15.06 -0.15 -6.26 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C 0.00 -0.12 5.47 -17.43 -0.10 -0.22 16 22 N -0.92 -26.58 10.47 55.49 0.58 -26.00 16 23 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.06 1.25 7.91 -51.93 -0.41 0.84 16 32 H 0.40 4.54 8.31 -40.82 -0.34 4.20 16 33 H 0.08 0.76 7.84 -51.93 -0.41 0.35 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 42 H 0.08 2.15 6.73 -51.93 -0.35 1.80 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -32.67 342.89 -8.89 -41.56 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.28 Total: 2.42 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.76 Total: 1.79 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.18 Total: -51.55 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.81 Total: -16.08 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.67 -8.89 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087494912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.196 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds