Wall clock time and date at job start Tue Mar 31 2020 02:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 H 1.09001 * 109.99949 * 56.20066 * 3 2 1 5 5 C 1.54327 * 109.88303 * 295.10753 * 3 2 1 6 6 H 1.09005 * 110.86995 * 336.82766 * 5 3 2 7 7 N 1.46495 * 110.72053 * 100.02611 * 5 3 2 8 8 C 1.34780 * 120.00205 * 199.97796 * 7 5 3 9 9 O 1.21275 * 119.99620 * 359.97438 * 8 7 5 10 10 C 1.50696 * 119.99772 * 179.72575 * 8 7 5 11 11 H 1.08999 * 109.82930 * 55.70162 * 10 8 7 12 12 C 1.54380 * 109.83141 * 294.80912 * 10 8 7 13 13 C 1.55452 * 102.18584 * 219.18500 * 12 10 8 14 14 C 1.54942 * 100.99064 * 34.04209 * 13 12 10 15 15 O 1.43243 * 109.82722 * 176.58580 * 10 8 7 16 16 C 1.55153 * 102.94007 * 218.39005 * 5 3 2 17 17 C 1.54910 * 101.58535 * 35.50331 * 16 5 3 18 18 N 1.47016 * 109.87934 * 177.30050 * 3 2 1 19 19 C 1.36941 * 125.65034 * 298.31674 * 18 3 2 20 20 H 1.08000 * 120.00034 * 348.12478 * 19 18 3 21 21 C 1.38815 * 119.99924 * 168.11236 * 19 18 3 22 22 N 1.31619 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99648 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46959 * 90.00619 * 23 21 19 25 25 H 1.48503 * 109.46789 * 210.00334 * 23 21 19 26 26 H 1.48499 * 109.47367 * 330.00590 * 23 21 19 27 27 H 1.09005 * 109.47459 * 65.49491 * 1 2 3 28 28 H 1.08995 * 109.47366 * 185.50139 * 1 2 3 29 29 H 1.09008 * 109.47085 * 305.50080 * 1 2 3 30 30 H 1.08999 * 109.46900 * 240.00169 * 2 1 3 31 31 H 1.08996 * 109.47202 * 120.00292 * 2 1 3 32 32 H 0.97001 * 119.99652 * 19.97750 * 7 5 3 33 33 H 1.09002 * 110.84880 * 337.32428 * 12 10 8 34 34 H 1.09000 * 110.84431 * 100.94387 * 12 10 8 35 35 H 1.09003 * 111.05750 * 276.12168 * 13 12 10 36 36 H 1.08997 * 111.14442 * 151.99566 * 13 12 10 37 37 H 1.09003 * 110.31309 * 204.69070 * 14 13 12 38 38 H 1.08995 * 110.39490 * 82.55956 * 14 13 12 39 39 H 1.09008 * 111.00279 * 153.57762 * 16 5 3 40 40 H 1.08993 * 111.00696 * 277.42303 * 16 5 3 41 41 H 1.09001 * 110.36502 * 81.82506 * 17 16 5 42 42 H 1.08991 * 110.36893 * 204.15046 * 17 16 5 43 43 H 0.97005 * 119.99491 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6271 1.9839 0.8512 5 6 1.6344 2.1426 -1.3141 6 1 1.4536 1.4127 -2.1033 7 7 0.4535 2.9851 -1.1095 8 6 -0.2993 3.3578 -2.1635 9 8 0.0012 2.9960 -3.2814 10 6 -1.5176 4.2192 -1.9522 11 1 -1.2383 5.1318 -1.4256 12 6 -2.5718 3.4437 -1.1335 13 6 -3.8993 3.8681 -1.8220 14 6 -3.4358 4.0128 -3.2934 15 8 -2.1051 4.5484 -3.2165 16 6 2.8776 3.0106 -1.6435 17 6 4.0311 2.1010 -1.1520 18 7 3.5087 1.4535 0.0651 19 6 4.2661 0.9471 1.0874 20 1 3.7974 0.6670 2.0193 21 6 5.6362 0.7934 0.9259 22 7 6.2075 1.1349 -0.2096 23 14 6.6693 0.1019 2.3203 24 1 6.7399 -1.3763 2.1980 25 1 8.0394 0.6705 2.2503 26 1 6.0498 0.4619 3.6210 27 1 -0.3634 0.4263 -0.9351 28 1 -0.3634 -1.0229 0.0985 29 1 -0.3634 0.5968 0.8367 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.2134 3.2747 -0.2154 33 1 -2.4165 2.3683 -1.2205 34 1 -2.5580 3.7555 -0.0891 35 1 -4.2584 4.8188 -1.4279 36 1 -4.6587 3.0924 -1.7239 37 1 -4.0897 4.7000 -3.8303 38 1 -3.4242 3.0403 -3.7854 39 1 2.9537 3.1933 -2.7154 40 1 2.8568 3.9490 -1.0894 41 1 4.2715 1.3521 -1.9067 42 1 4.9113 2.6988 -0.9157 43 1 7.1650 1.0279 -0.3222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087494912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:22 Heat of formation + Delta-G solvation = -85.566380 kcal Electronic energy + Delta-G solvation = -23364.531473 eV Core-core repulsion = 20023.153827 eV Total energy + Delta-G solvation = -3341.377646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47358 -40.05875 -38.75854 -35.65215 -34.34201 -33.60012 -32.96851 -31.27765 -30.27200 -28.01714 -26.41639 -24.68159 -23.42211 -22.64378 -22.18443 -21.54235 -20.93271 -18.81559 -18.46936 -17.73519 -17.27163 -16.72798 -16.65399 -15.86769 -15.71928 -15.61047 -15.31565 -14.80592 -14.43331 -14.31620 -14.04382 -13.80925 -13.55657 -13.24183 -12.95846 -12.85186 -12.73950 -12.67239 -12.57134 -12.21982 -12.14925 -12.06622 -11.97174 -11.94550 -11.80014 -11.55999 -11.35965 -11.21137 -10.69329 -10.30300 -10.00387 -8.85250 -7.83503 -5.22093 1.47879 1.49534 1.57998 1.59784 1.98998 2.51708 2.96771 3.35274 3.45815 3.57046 3.76890 3.84240 3.90722 3.91925 4.16409 4.18998 4.23173 4.36765 4.40723 4.46523 4.61352 4.64748 4.73849 4.80953 4.83055 4.86735 4.93860 5.00402 5.01368 5.15465 5.20302 5.24363 5.31149 5.46633 5.50903 5.55896 5.66484 5.71831 5.92124 6.23427 6.60749 7.08961 7.28394 7.77192 8.43762 9.26862 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.003997 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.030695 B = 7003.034506 C = 7438.922800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.161 3.839 4 H 0.058 0.942 5 C 0.158 3.842 6 H 0.070 0.930 7 N -0.696 5.696 8 C 0.497 3.503 9 O -0.580 6.580 10 C 0.065 3.935 11 H 0.131 0.869 12 C -0.142 4.142 13 C -0.142 4.142 14 C 0.035 3.965 15 O -0.388 6.388 16 C -0.143 4.143 17 C 0.180 3.820 18 N -0.614 5.614 19 C -0.231 4.231 20 H 0.086 0.914 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.298 1.298 26 H -0.264 1.264 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.416 0.584 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.074 0.926 41 H -0.011 1.011 42 H 0.047 0.953 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.228 5.973 1.993 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.054 3.946 4 H 0.076 0.924 5 C 0.052 3.948 6 H 0.088 0.912 7 N -0.349 5.349 8 C 0.284 3.716 9 O -0.459 6.459 10 C 0.004 3.996 11 H 0.149 0.851 12 C -0.179 4.179 13 C -0.180 4.180 14 C -0.041 4.041 15 O -0.306 6.306 16 C -0.183 4.183 17 C 0.054 3.946 18 N -0.338 5.338 19 C -0.360 4.360 20 H 0.104 0.896 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.805 3.195 24 H -0.216 1.216 25 H -0.225 1.225 26 H -0.189 1.189 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.253 0.747 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.007 0.993 42 H 0.065 0.935 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.723 5.801 1.086 22.511 hybrid contribution 1.345 -0.684 0.499 1.589 sum -20.379 5.117 1.584 21.071 Atomic orbital electron populations 1.21654 0.93565 1.02047 1.01825 1.21916 0.96772 0.97543 1.00486 1.21249 0.84295 0.94574 0.94481 0.92441 1.21604 0.84205 0.91844 0.97191 0.91173 1.45788 1.26790 1.51767 1.10578 1.21751 0.85111 0.80535 0.84232 1.90689 1.72621 1.56828 1.25773 1.22856 0.91541 0.98723 0.86433 0.85141 1.23228 0.92542 1.00544 1.01615 1.23300 0.97297 1.04379 0.92979 1.23698 0.82409 0.99181 0.98815 1.88501 1.30379 1.75795 1.35954 1.23235 0.95999 0.98876 1.00169 1.21171 0.94079 0.92330 0.86971 1.44706 1.00640 1.68398 1.20101 1.19352 0.89567 1.34283 0.92756 0.89613 1.25701 0.98410 1.02244 0.99484 1.70156 1.09702 1.54311 1.25883 0.85109 0.77685 0.77628 0.79094 1.21641 1.22453 1.18871 0.93466 0.92269 0.90891 0.94993 0.93007 0.74696 0.90671 0.85577 0.88143 0.87781 0.87756 0.93288 0.92231 0.90727 0.99312 0.93469 0.94470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.57 71.98 0.69 -2.69 16 2 C -0.13 -4.53 5.41 30.60 0.17 -4.37 16 3 C 0.16 6.11 2.94 45.34 0.13 6.24 16 4 H 0.06 1.97 7.69 -2.39 -0.02 1.96 16 5 C 0.16 5.62 1.92 46.18 0.09 5.71 16 6 H 0.07 2.84 7.34 -2.38 -0.02 2.83 16 7 N -0.70 -18.32 4.91 -436.93 -2.15 -20.47 16 8 C 0.50 14.41 7.03 87.66 0.62 15.02 16 9 O -0.58 -23.38 16.25 15.77 0.26 -23.12 16 10 C 0.07 1.31 3.94 30.32 0.12 1.43 16 11 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 12 C -0.14 -1.70 6.53 31.91 0.21 -1.49 16 13 C -0.14 -1.38 7.16 32.10 0.23 -1.15 16 14 C 0.03 0.59 7.78 72.65 0.57 1.15 16 15 O -0.39 -9.89 10.56 -130.19 -1.38 -11.26 16 16 C -0.14 -5.81 6.77 31.99 0.22 -5.59 16 17 C 0.18 9.19 5.46 86.85 0.47 9.66 16 18 N -0.61 -30.58 3.13 -668.26 -2.09 -32.67 16 19 C -0.23 -12.46 9.77 84.03 0.82 -11.64 16 20 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 21 C -0.07 -3.67 5.47 84.86 0.46 -3.21 16 22 N -0.95 -57.47 10.47 21.65 0.23 -57.25 16 23 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 27 H 0.05 1.22 7.38 -2.38 -0.02 1.20 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 31 H 0.05 1.96 7.91 -2.39 -0.02 1.94 16 32 H 0.42 7.90 8.31 -92.71 -0.77 7.13 16 33 H 0.07 1.07 7.84 -2.39 -0.02 1.05 16 34 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 41 H -0.01 -0.64 8.11 -2.39 -0.02 -0.66 16 42 H 0.05 2.69 6.73 -2.39 -0.02 2.67 16 43 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -75.24 342.89 1.91 -73.33 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.22 Total: 15.16 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 4.79 Total: 9.09 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -4.01 Total: -110.39 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -1.12 Total: -34.38 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -75.24 1.91 -73.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087494912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.234 kcal (2) G-P(sol) polarization free energy of solvation -75.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds