Wall clock time and date at job start Tue Mar 31 2020 02:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46728 * 2 1 4 4 H 1.08997 * 109.87533 * 301.84070 * 3 2 1 5 5 C 1.54330 * 109.87650 * 180.82501 * 3 2 1 6 6 H 1.08998 * 110.72508 * 336.75039 * 5 3 2 7 7 N 1.46496 * 110.71777 * 100.02813 * 5 3 2 8 8 C 1.34778 * 119.99965 * 199.97045 * 7 5 3 9 9 O 1.21281 * 120.00085 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00151 * 180.02562 * 8 7 5 11 11 H 1.08998 * 110.45841 * 302.60899 * 10 8 7 12 12 C 1.54506 * 110.51529 * 180.02562 * 10 8 7 13 13 C 1.54474 * 104.06430 * 241.35753 * 12 10 8 14 14 O 1.44424 * 104.80327 * 23.97482 * 13 12 10 15 15 C 1.44416 * 105.27655 * 319.48773 * 14 13 12 16 16 C 1.55158 * 102.94034 * 218.39050 * 5 3 2 17 17 C 1.54905 * 101.58129 * 35.50157 * 16 5 3 18 18 N 1.47283 * 109.87301 * 62.98444 * 3 2 1 19 19 C 1.36940 * 125.79076 * 298.34853 * 18 3 2 20 20 H 1.07997 * 120.00540 * 340.74996 * 19 18 3 21 21 C 1.38821 * 119.99843 * 160.74345 * 19 18 3 22 22 N 1.31615 * 120.00106 * 159.83868 * 21 19 18 23 23 Si 1.86797 * 119.99890 * 339.84157 * 21 19 18 24 24 H 1.48497 * 109.47570 * 84.88462 * 23 21 19 25 25 H 1.48499 * 109.47072 * 204.88591 * 23 21 19 26 26 H 1.48501 * 109.47263 * 324.88259 * 23 21 19 27 27 H 1.09004 * 109.46732 * 292.13865 * 1 2 3 28 28 H 1.09001 * 109.47364 * 52.14009 * 1 2 3 29 29 H 1.09004 * 109.47064 * 172.14144 * 1 2 3 30 30 H 1.09002 * 109.46830 * 240.00221 * 2 1 3 31 31 H 1.09002 * 109.47280 * 120.00206 * 2 1 3 32 32 H 0.97002 * 119.99955 * 19.97902 * 7 5 3 33 33 H 1.09008 * 110.50966 * 359.97438 * 12 10 8 34 34 H 1.08999 * 110.51647 * 122.70773 * 12 10 8 35 35 H 1.08998 * 110.37477 * 142.80821 * 13 12 10 36 36 H 1.08997 * 110.37380 * 265.03451 * 13 12 10 37 37 H 1.09002 * 110.37521 * 281.68527 * 15 14 13 38 38 H 1.08999 * 110.37326 * 159.33960 * 15 14 13 39 39 H 1.09005 * 111.00358 * 277.43070 * 16 5 3 40 40 H 1.09002 * 111.03675 * 153.59375 * 16 5 3 41 41 H 1.09000 * 110.36449 * 81.83450 * 17 16 5 42 42 H 1.09000 * 110.36854 * 204.04225 * 17 16 5 43 43 H 0.96992 * 120.00368 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6536 1.9722 -0.8708 5 6 3.5831 1.4536 -0.0209 6 1 3.9809 0.5178 0.3717 7 7 4.0813 1.7024 -1.3759 8 6 5.3439 1.3626 -1.7026 9 8 6.0675 0.8504 -0.8750 10 6 5.8566 1.6190 -3.0963 11 1 5.2264 1.1194 -3.8320 12 6 7.3218 1.1471 -3.2297 13 6 8.1010 2.4352 -3.5756 14 8 7.2833 3.5100 -3.0637 15 6 5.9240 3.1365 -3.3776 16 6 3.9348 2.6368 0.9192 17 6 2.8155 2.5307 1.9847 18 7 1.6136 2.1243 1.2340 19 6 0.3186 2.3447 1.6206 20 1 -0.4775 2.3004 0.8922 21 6 0.0290 2.6250 2.9491 22 7 -1.1038 3.2158 3.2652 23 14 1.2472 2.1637 4.2879 24 1 2.2606 3.2401 4.4274 25 1 0.5266 1.9924 5.5751 26 1 1.9227 0.8918 3.9258 27 1 -0.3633 0.3873 0.9520 28 1 -0.3634 0.6307 -0.8113 29 1 -0.3633 -1.0181 -0.1405 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.5024 2.1118 -2.0379 33 1 7.6755 0.7287 -2.2873 34 1 7.4161 0.4163 -4.0328 35 1 9.0747 2.4329 -3.0857 36 1 8.2204 2.5281 -4.6550 37 1 5.7078 3.3379 -4.4269 38 1 5.2252 3.6728 -2.7356 39 1 3.8800 3.5873 0.3883 40 1 4.9177 2.4996 1.3700 41 1 3.0708 1.7767 2.7293 42 1 2.6549 3.4966 2.4638 43 1 -1.3060 3.4120 4.1933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087515465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:24 Heat of formation + Delta-G solvation = -57.486507 kcal Electronic energy + Delta-G solvation = -23396.112551 eV Core-core repulsion = 20055.952539 eV Total energy + Delta-G solvation = -3340.160012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55495 -38.94790 -37.74426 -34.28622 -32.58566 -32.56266 -31.97698 -29.88828 -28.96920 -27.11839 -24.63589 -23.62249 -22.41153 -22.19386 -20.73101 -20.26942 -19.27087 -17.49498 -17.00107 -16.70193 -16.33217 -15.84258 -15.24591 -15.03629 -14.57213 -14.41848 -13.90817 -13.62933 -13.18949 -12.97962 -12.79396 -12.49960 -12.32228 -12.15470 -11.88545 -11.72979 -11.57723 -11.39410 -11.18798 -11.14982 -10.95493 -10.67283 -10.37308 -10.30513 -10.22155 -10.01233 -9.87799 -9.63592 -9.28921 -8.87395 -8.65130 -7.07575 -5.95498 -3.27079 2.60074 3.14082 3.35543 3.49397 3.50497 3.71010 4.15906 4.51119 4.53858 4.62210 4.83431 4.87431 4.95490 5.11266 5.13223 5.22197 5.27790 5.28537 5.38938 5.46175 5.56208 5.59534 5.78649 5.86276 5.90252 5.94956 6.07347 6.15451 6.31152 6.39449 6.48244 6.50364 6.58988 6.59589 6.73093 6.75393 6.99252 7.31486 7.55608 7.68665 8.24599 8.29602 8.79953 9.66294 10.14520 11.19931 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.004391 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.596173 B = 6374.902785 C = 6717.367777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.160 3.840 4 H 0.046 0.954 5 C 0.134 3.866 6 H 0.094 0.906 7 N -0.715 5.715 8 C 0.522 3.478 9 O -0.536 6.536 10 C -0.147 4.147 11 H 0.111 0.889 12 C -0.147 4.147 13 C 0.045 3.955 14 O -0.370 6.370 15 C 0.055 3.945 16 C -0.139 4.139 17 C 0.108 3.892 18 N -0.599 5.599 19 C -0.234 4.234 20 H 0.099 0.901 21 C 0.022 3.978 22 N -0.910 5.910 23 Si 0.882 3.118 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.275 1.275 27 H 0.095 0.905 28 H 0.042 0.958 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.399 0.601 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.062 0.938 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.508 -3.337 -15.471 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.052 3.948 4 H 0.064 0.936 5 C 0.030 3.970 6 H 0.112 0.888 7 N -0.365 5.365 8 C 0.308 3.692 9 O -0.413 6.413 10 C -0.169 4.169 11 H 0.129 0.871 12 C -0.185 4.185 13 C -0.032 4.032 14 O -0.288 6.288 15 C -0.022 4.022 16 C -0.178 4.178 17 C -0.017 4.017 18 N -0.326 5.326 19 C -0.361 4.361 20 H 0.116 0.884 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.713 3.287 24 H -0.213 1.213 25 H -0.232 1.232 26 H -0.201 1.201 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.234 0.766 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.878 -3.433 -14.592 20.428 hybrid contribution 0.183 -0.344 0.422 0.575 sum 14.061 -3.778 -14.169 20.316 Atomic orbital electron populations 1.21972 0.95219 0.99169 1.04691 1.21913 0.97400 0.97233 0.99934 1.21196 0.89572 0.92406 0.91604 0.93602 1.22106 0.94789 0.99132 0.81002 0.88763 1.46004 1.13371 1.63075 1.14073 1.20208 0.81724 0.77824 0.89452 1.90670 1.56134 1.43347 1.51112 1.22733 0.99285 0.98853 0.96044 0.87099 1.23002 0.92340 0.98474 1.04670 1.23447 0.95633 0.85541 0.98538 1.89178 1.16391 1.43102 1.80157 1.23411 0.85700 0.91922 1.01164 1.23117 0.98854 0.98158 0.97715 1.22004 0.86688 0.98947 0.94082 1.44828 1.01787 1.64773 1.21170 1.18627 0.81810 1.42305 0.93354 0.88377 1.24985 0.96065 0.99745 0.96881 1.69794 1.24737 1.42568 1.18281 0.87016 0.80459 0.79351 0.81856 1.21294 1.23190 1.20070 0.88653 0.93902 0.95061 0.93874 0.92551 0.76598 0.88085 0.90090 0.88896 0.92223 0.91059 0.88502 0.90988 0.91264 0.95345 0.91951 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.74 37.16 0.32 -2.51 16 2 C -0.13 -2.22 5.49 -26.73 -0.15 -2.36 16 3 C 0.16 2.92 3.04 -66.80 -0.20 2.72 16 4 H 0.05 0.81 7.68 -51.93 -0.40 0.41 16 5 C 0.13 2.21 2.76 -66.09 -0.18 2.03 16 6 H 0.09 1.69 7.41 -51.93 -0.38 1.30 16 7 N -0.71 -9.24 5.02 -52.03 -0.26 -9.50 16 8 C 0.52 6.99 7.07 -10.99 -0.08 6.91 16 9 O -0.54 -9.30 15.01 5.56 0.08 -9.21 16 10 C -0.15 -1.38 3.51 -90.20 -0.32 -1.70 16 11 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 12 C -0.15 -1.34 6.67 -25.17 -0.17 -1.51 16 13 C 0.05 0.40 7.63 37.93 0.29 0.69 16 14 O -0.37 -4.37 11.65 -35.23 -0.41 -4.78 16 15 C 0.06 0.50 7.17 37.94 0.27 0.78 16 16 C -0.14 -2.47 6.77 -24.58 -0.17 -2.63 16 17 C 0.11 2.34 4.69 -2.53 -0.01 2.32 16 18 N -0.60 -13.63 2.95 -162.37 -0.48 -14.11 16 19 C -0.23 -6.20 7.94 -15.05 -0.12 -6.32 16 20 H 0.10 2.73 6.95 -52.49 -0.37 2.36 16 21 C 0.02 0.61 5.45 -17.43 -0.10 0.52 16 22 N -0.91 -27.31 13.97 55.49 0.78 -26.54 16 23 Si 0.88 22.42 24.25 -169.99 -4.12 18.30 16 24 H -0.29 -7.08 6.52 56.52 0.37 -6.71 16 25 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 26 H -0.27 -6.92 6.48 56.52 0.37 -6.55 16 27 H 0.09 2.12 5.41 -51.93 -0.28 1.84 16 28 H 0.04 0.76 8.13 -51.93 -0.42 0.33 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.40 4.10 8.31 -40.82 -0.34 3.76 16 33 H 0.10 1.18 6.50 -51.92 -0.34 0.84 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.90 7.72 -51.93 -0.40 0.50 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.03 0.65 5.44 -51.93 -0.28 0.37 16 42 H 0.06 1.44 6.57 -51.93 -0.34 1.09 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -32.25 329.74 -7.03 -39.28 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.98 Total: 2.66 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.60 Total: -1.07 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.04 Total: -50.15 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.33 Total: -13.99 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.12 Total: 18.30 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.25 -7.03 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087515465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.208 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds