Wall clock time and date at job start Tue Mar 31 2020 02:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47073 * 2 1 4 4 H 1.09006 * 109.99936 * 55.88378 * 3 2 1 5 5 C 1.54325 * 109.88562 * 294.79017 * 3 2 1 6 6 H 1.08992 * 110.72005 * 336.92818 * 5 3 2 7 7 N 1.46498 * 110.71996 * 100.02817 * 5 3 2 8 8 C 1.34775 * 119.99804 * 205.00103 * 7 5 3 9 9 O 1.21285 * 120.00273 * 0.27248 * 8 7 5 10 10 C 1.50707 * 120.00291 * 179.97438 * 8 7 5 11 11 H 1.09002 * 110.44851 * 59.29804 * 10 8 7 12 12 C 1.54500 * 110.51194 * 181.90443 * 10 8 7 13 13 C 1.54473 * 104.06397 * 118.65019 * 12 10 8 14 14 O 1.44421 * 104.80731 * 23.97328 * 13 12 10 15 15 C 1.44653 * 105.36529 * 319.57067 * 14 13 12 16 16 C 1.55161 * 102.94275 * 218.39017 * 5 3 2 17 17 C 1.54914 * 101.58010 * 35.49947 * 16 5 3 18 18 N 1.47021 * 109.88351 * 176.97843 * 3 2 1 19 19 C 1.36943 * 125.65142 * 298.39789 * 18 3 2 20 20 H 1.08005 * 119.99249 * 345.37652 * 19 18 3 21 21 C 1.38811 * 120.00091 * 165.37601 * 19 18 3 22 22 N 1.31613 * 119.99993 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99620 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47483 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47157 * 120.00413 * 23 21 19 26 26 H 1.48501 * 109.46868 * 240.00000 * 23 21 19 27 27 H 1.09000 * 109.47382 * 305.58419 * 1 2 3 28 28 H 1.08998 * 109.47281 * 65.58966 * 1 2 3 29 29 H 1.09002 * 109.46953 * 185.58337 * 1 2 3 30 30 H 1.09005 * 109.46886 * 240.00218 * 2 1 3 31 31 H 1.08997 * 109.46730 * 120.00517 * 2 1 3 32 32 H 0.96997 * 120.00244 * 25.00161 * 7 5 3 33 33 H 1.09006 * 110.51077 * 237.28981 * 12 10 8 34 34 H 1.09004 * 110.51696 * 359.97438 * 12 10 8 35 35 H 1.08997 * 110.38116 * 142.81347 * 13 12 10 36 36 H 1.09009 * 110.37082 * 265.03348 * 13 12 10 37 37 H 1.08996 * 110.34129 * 281.58794 * 15 14 13 38 38 H 1.09000 * 110.50533 * 159.18433 * 15 14 13 39 39 H 1.09001 * 111.00554 * 153.57704 * 16 5 3 40 40 H 1.09006 * 111.00204 * 277.43016 * 16 5 3 41 41 H 1.09008 * 110.36357 * 204.15327 * 17 16 5 42 42 H 1.09000 * 110.36417 * 81.83177 * 17 16 5 43 43 H 0.97005 * 119.99762 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6226 1.9854 0.8480 5 6 1.6412 2.1401 -1.3175 6 1 1.4635 1.4066 -2.1038 7 7 0.4593 2.9830 -1.1206 8 6 -0.3448 3.2702 -2.1633 9 8 -0.0927 2.8268 -3.2637 10 6 -1.5611 4.1368 -1.9607 11 1 -1.2719 5.1151 -1.5767 12 6 -2.3467 4.2846 -3.2828 13 6 -3.7289 3.6704 -2.9688 14 8 -3.8639 3.7789 -1.5350 15 6 -2.5597 3.4521 -1.0014 16 6 2.8861 3.0076 -1.6419 17 6 4.0371 2.0988 -1.1427 18 7 3.5083 1.4536 0.0729 19 6 4.2604 0.9478 1.0994 20 1 3.7940 0.7097 2.0441 21 6 5.6220 0.7411 0.9259 22 7 6.1903 1.0317 -0.2251 23 14 6.6477 0.0504 2.3260 24 1 5.7777 -0.1901 3.5052 25 1 7.2696 -1.2290 1.8998 26 1 7.7114 1.0219 2.6863 27 1 -0.3634 0.5980 0.8357 28 1 -0.3634 0.4247 -0.9358 29 1 -0.3633 -1.0228 0.1000 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.2555 3.3343 -0.2397 33 1 -2.4483 5.3363 -3.5511 34 1 -1.8553 3.7314 -4.0831 35 1 -4.5170 4.2341 -3.4679 36 1 -3.7582 2.6250 -3.2763 37 1 -2.4089 2.3726 -1.0038 38 1 -2.4496 3.8492 0.0077 39 1 2.9679 3.1883 -2.7137 40 1 2.8625 3.9470 -1.0895 41 1 4.9161 2.6972 -0.9028 42 1 4.2815 1.3486 -1.8947 43 1 7.1418 0.8869 -0.3465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087515466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:26 Heat of formation + Delta-G solvation = -66.548518 kcal Electronic energy + Delta-G solvation = -23362.813136 eV Core-core repulsion = 20022.260166 eV Total energy + Delta-G solvation = -3340.552970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46174 -38.82875 -37.54776 -34.10500 -32.83680 -32.41925 -31.65204 -29.64156 -28.81102 -26.56305 -24.61480 -23.60862 -22.65930 -21.76903 -20.34814 -20.18257 -19.35248 -17.50456 -16.93236 -16.63133 -15.97301 -15.55818 -15.17084 -14.80862 -14.45848 -14.09463 -13.95288 -13.66741 -13.34651 -13.04122 -12.75606 -12.34191 -12.06526 -11.97484 -11.70341 -11.64236 -11.53313 -11.18114 -11.00895 -10.92722 -10.85610 -10.65574 -10.48950 -10.30674 -10.07704 -10.06467 -9.79208 -9.68955 -9.62080 -8.69950 -8.60408 -6.84081 -5.78562 -3.15115 2.66721 3.21298 3.36495 3.42637 3.44667 3.76110 4.22714 4.44866 4.56560 4.69078 4.87523 5.01399 5.09357 5.27204 5.32732 5.41180 5.47479 5.50492 5.51791 5.53479 5.71565 5.75030 5.76859 5.82415 5.85560 6.02069 6.19262 6.26309 6.37568 6.42831 6.48273 6.52828 6.63591 6.70138 6.91575 7.10742 7.47562 7.57189 7.66159 7.75832 8.22626 8.32465 9.14855 9.75902 10.43500 11.33421 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034187 B = 0.003988 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.835800 B = 7019.144191 C = 7435.794514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.136 3.864 6 H 0.094 0.906 7 N -0.711 5.711 8 C 0.520 3.480 9 O -0.539 6.539 10 C -0.146 4.146 11 H 0.109 0.891 12 C -0.146 4.146 13 C 0.045 3.955 14 O -0.374 6.374 15 C 0.057 3.943 16 C -0.156 4.156 17 C 0.174 3.826 18 N -0.594 5.594 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.003 4.003 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.425 5.985 -2.663 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.032 3.968 6 H 0.112 0.888 7 N -0.361 5.361 8 C 0.305 3.695 9 O -0.416 6.416 10 C -0.168 4.168 11 H 0.127 0.873 12 C -0.184 4.184 13 C -0.032 4.032 14 O -0.293 6.293 15 C -0.020 4.020 16 C -0.196 4.196 17 C 0.049 3.951 18 N -0.319 5.319 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.562 5.562 23 Si 0.740 3.260 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.177 5.662 -3.289 17.452 hybrid contribution 0.803 -0.282 1.011 1.321 sum -15.374 5.380 -2.279 16.447 Atomic orbital electron populations 1.21773 0.97312 1.00550 1.00790 1.22010 0.93531 0.99172 1.02431 1.21083 0.87100 0.93358 0.93198 0.94760 1.22142 0.83409 0.92440 0.98819 0.88762 1.46076 1.26829 1.51917 1.11245 1.20200 0.83702 0.80908 0.84713 1.90678 1.73425 1.52959 1.24537 1.22722 0.94853 1.00660 0.98588 0.87319 1.22953 0.95104 1.02803 0.97547 1.23460 0.97298 1.00677 0.81778 1.89150 1.30054 1.90572 1.19494 1.23411 0.81582 0.99608 0.97428 1.23425 0.96812 0.99072 1.00304 1.21433 0.93112 0.92892 0.87681 1.44458 0.98365 1.68373 1.20689 1.18987 0.89926 1.35908 0.90862 0.90646 1.24910 0.97243 1.00875 0.96978 1.69937 1.10604 1.52807 1.22864 0.86084 0.80247 0.78512 0.81142 1.20430 1.21670 1.21744 0.93424 0.93450 0.93651 0.92380 0.91685 0.76804 0.90276 0.87939 0.88918 0.92013 0.91516 0.88193 0.91965 0.92045 0.90789 0.95415 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.58 37.16 0.36 -1.74 16 2 C -0.13 -2.39 5.41 -26.74 -0.14 -2.54 16 3 C 0.16 3.09 2.94 -66.96 -0.20 2.89 16 4 H 0.03 0.64 7.72 -51.93 -0.40 0.24 16 5 C 0.14 2.36 2.02 -66.09 -0.13 2.23 16 6 H 0.09 1.80 7.18 -51.93 -0.37 1.43 16 7 N -0.71 -9.58 4.88 -52.03 -0.25 -9.83 16 8 C 0.52 7.07 7.03 -10.98 -0.08 7.00 16 9 O -0.54 -9.38 14.93 5.55 0.08 -9.30 16 10 C -0.15 -1.49 3.50 -90.21 -0.32 -1.80 16 11 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.15 -1.44 6.67 -25.17 -0.17 -1.61 16 13 C 0.04 0.41 7.63 37.93 0.29 0.70 16 14 O -0.37 -4.12 11.65 -35.23 -0.41 -4.53 16 15 C 0.06 0.54 7.17 37.93 0.27 0.82 16 16 C -0.16 -2.98 6.77 -24.58 -0.17 -3.14 16 17 C 0.17 4.13 5.41 -2.53 -0.01 4.12 16 18 N -0.59 -14.39 3.13 -162.57 -0.51 -14.90 16 19 C -0.23 -6.09 9.75 -15.06 -0.15 -6.24 16 20 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 21 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 22 N -0.92 -26.28 10.57 55.49 0.59 -25.69 16 23 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.68 7.40 -51.93 -0.38 0.29 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 31 H 0.06 1.27 7.90 -51.93 -0.41 0.86 16 32 H 0.40 4.40 8.37 -40.82 -0.34 4.06 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.19 6.50 -51.93 -0.34 0.86 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.95 6.93 -51.92 -0.36 1.59 16 42 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -30.86 340.79 -8.14 -38.99 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.20 Total: 3.07 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.54 Total: 0.51 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.18 Total: -50.42 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.33 Total: -13.83 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.86 -8.14 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087515466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.556 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds