Wall clock time and date at job start Tue Mar 31 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 109.47192 * 2 1 4 4 O 1.21284 * 119.99706 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99904 * 179.97438 * 3 2 1 6 6 C 1.46932 * 120.62931 * 180.02562 * 5 3 2 7 7 C 1.53194 * 108.77260 * 233.62952 * 6 5 3 8 8 C 1.53040 * 109.31086 * 305.36302 * 7 6 5 9 9 O 1.42900 * 109.45623 * 181.38573 * 8 7 6 10 10 C 1.42906 * 113.99862 * 149.97332 * 9 8 7 11 11 C 1.53495 * 114.20623 * 149.99957 * 10 9 8 12 12 N 1.47066 * 87.98658 * 87.51851 * 11 10 9 13 13 C 1.36937 * 136.06113 * 206.85859 * 12 11 10 14 14 H 1.07995 * 120.00001 * 0.02562 * 13 12 11 15 15 C 1.38817 * 120.00320 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99557 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47441 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47001 * 120.00359 * 17 15 13 20 20 H 1.48499 * 109.47209 * 240.00202 * 17 15 13 21 21 C 1.47067 * 87.88528 * 27.11900 * 12 11 10 22 22 C 1.53039 * 109.52686 * 61.37655 * 8 7 6 23 23 C 1.46925 * 120.63399 * 0.02562 * 5 3 2 24 24 H 1.09004 * 109.46796 * 60.00093 * 1 2 3 25 25 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47286 * 300.00219 * 1 2 3 27 27 H 1.08995 * 109.47286 * 239.99781 * 2 1 3 28 28 H 1.09004 * 109.46796 * 119.99907 * 2 1 3 29 29 H 1.09000 * 109.58484 * 113.84244 * 6 5 3 30 30 H 1.08999 * 109.69890 * 353.48661 * 6 5 3 31 31 H 1.08997 * 109.49422 * 185.41194 * 7 6 5 32 32 H 1.09000 * 109.49689 * 65.31529 * 7 6 5 33 33 H 1.08994 * 109.46090 * 301.35949 * 8 7 6 34 34 H 1.08994 * 113.27987 * 16.93304 * 10 9 8 35 35 H 1.09005 * 113.46950 * 332.74417 * 11 10 9 36 36 H 1.08994 * 113.52293 * 202.30901 * 11 10 9 37 37 H 0.96999 * 119.99537 * 179.97438 * 16 15 13 38 38 H 1.09007 * 113.46858 * 87.65629 * 21 12 11 39 39 H 1.08993 * 113.47208 * 218.09965 * 21 12 11 40 40 H 1.09001 * 109.50197 * 58.57594 * 22 8 7 41 41 H 1.09001 * 109.49527 * 178.67347 * 22 8 7 42 42 H 1.09001 * 109.58822 * 246.16215 * 23 5 3 43 43 H 1.09006 * 109.58346 * 6.43724 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8625 3.0469 0.0011 7 6 4.8400 3.2146 -1.1664 8 6 5.9312 2.1458 -1.0703 9 8 6.8630 2.3194 -2.1398 10 6 8.1931 1.9024 -1.8252 11 6 8.9951 1.3938 -3.0311 12 7 9.4046 2.7842 -3.2795 13 6 9.7875 3.5197 -4.3693 14 1 9.8341 3.0567 -5.3439 15 6 10.1147 4.8606 -4.2217 16 7 10.0573 5.4250 -3.0340 17 14 10.6363 5.8639 -5.7085 18 1 10.6186 5.0025 -6.9179 19 1 9.6957 6.9978 -5.8951 20 1 12.0086 6.3893 -5.4944 21 6 9.2283 3.0357 -1.8413 22 6 5.2966 0.7566 -1.1676 23 6 4.3245 0.5609 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.3775 3.2470 0.9406 30 1 3.0313 3.7424 -0.1154 31 1 5.2948 4.2040 -1.1208 32 1 4.3037 3.1033 -2.1088 33 1 6.4506 2.2419 -0.1169 34 1 8.2462 1.2568 -0.9486 35 1 8.3718 0.9769 -3.8223 36 1 9.8230 0.7396 -2.7582 37 1 10.2863 6.3619 -2.9308 38 1 10.1183 2.8190 -1.2504 39 1 8.8034 4.0149 -1.6206 40 1 4.7559 0.6687 -2.1100 41 1 6.0765 -0.0036 -1.1227 42 1 4.8771 0.5587 0.9400 43 1 3.7967 -0.3858 -0.1151 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093492004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:19 Heat of formation + Delta-G solvation = -22.867256 kcal Electronic energy + Delta-G solvation = -22703.660852 eV Core-core repulsion = 19365.002044 eV Total energy + Delta-G solvation = -3338.658808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.38912 -38.83188 -37.41798 -35.32978 -33.28191 -32.12736 -31.31552 -31.11049 -27.54994 -25.67716 -24.57230 -24.07298 -23.34225 -22.74172 -20.78569 -19.45709 -18.98430 -17.58017 -16.83802 -16.10175 -15.96046 -15.91391 -14.93366 -14.51935 -14.44238 -14.31005 -14.00544 -13.72532 -13.51427 -13.06704 -12.93997 -12.68078 -12.45072 -12.22890 -12.01354 -11.91066 -11.73501 -11.44271 -11.32101 -11.14431 -10.96098 -10.82671 -10.50994 -10.31993 -10.19824 -9.88659 -9.78470 -9.39456 -8.85559 -8.78485 -8.64190 -6.81794 -5.70283 -3.01578 2.47309 2.81315 3.42961 3.47817 3.50621 3.96784 4.28091 4.50790 4.55944 4.78337 4.81699 4.83889 4.91226 5.09266 5.14953 5.23899 5.28704 5.40042 5.44364 5.46491 5.50774 5.52305 5.54979 5.67202 5.70216 5.82130 5.86263 5.94909 5.96796 6.13659 6.28735 6.40476 6.43052 6.57565 6.58916 7.00526 7.22109 7.26626 7.59526 7.95541 8.01853 8.07419 9.09843 9.76824 10.70068 11.47579 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031215 B = 0.003347 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.786054 B = 8363.105139 C = 8731.321103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.513 3.487 4 O -0.544 6.544 5 N -0.614 5.614 6 C 0.114 3.886 7 C -0.131 4.131 8 C 0.090 3.910 9 O -0.338 6.338 10 C 0.031 3.969 11 C 0.113 3.887 12 N -0.602 5.602 13 C -0.211 4.211 14 H 0.081 0.919 15 C -0.010 4.010 16 N -0.920 5.920 17 Si 0.912 3.088 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.136 3.864 22 C -0.158 4.158 23 C 0.110 3.890 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.251 0.749 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 -13.302 9.906 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.422 6.422 5 N -0.348 5.348 6 C -0.008 4.008 7 C -0.169 4.169 8 C 0.032 3.968 9 O -0.257 6.257 10 C -0.028 4.028 11 C -0.013 4.013 12 N -0.328 5.328 13 C -0.339 4.339 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.568 5.568 17 Si 0.743 3.257 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.010 3.990 22 C -0.196 4.196 23 C -0.013 4.013 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.095 -12.426 9.521 21.064 hybrid contribution 0.768 0.393 -0.554 1.025 sum -13.328 -12.032 8.966 20.070 Atomic orbital electron populations 1.21537 0.93066 1.01497 1.03364 1.21670 0.98565 0.94018 1.04176 1.20791 0.81630 0.91903 0.75533 1.90688 1.54804 1.46672 1.50013 1.48229 1.05638 1.07603 1.73309 1.21619 0.97996 0.82894 0.98279 1.21965 0.95850 1.00105 0.98980 1.21992 0.90344 0.93182 0.91304 1.88059 1.17042 1.84439 1.36121 1.23951 0.83246 0.98503 0.97057 1.22651 0.94269 0.89750 0.94678 1.45387 1.79264 1.04539 1.03593 1.18950 1.37920 0.91086 0.85903 0.90170 1.24769 1.02254 0.96655 0.96915 1.69837 1.54436 1.11641 1.20875 0.86039 0.77806 0.80221 0.81672 1.20492 1.21714 1.21834 1.22576 0.92702 0.97713 0.86052 1.22499 0.99122 0.99015 0.98977 1.21768 0.90908 0.89611 0.99039 0.91958 0.92127 0.92049 0.88847 0.89001 0.91306 0.88593 0.89453 0.90813 0.92232 0.92074 0.93644 0.94025 0.93849 0.95115 0.90497 0.90664 0.90276 0.91054 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.14 -1.10 4.77 -27.88 -0.13 -1.24 16 3 C 0.51 5.96 7.70 -10.99 -0.08 5.88 16 4 O -0.54 -8.42 15.40 5.55 0.09 -8.33 16 5 N -0.61 -6.60 2.97 -172.74 -0.51 -7.12 16 6 C 0.11 1.34 6.43 -3.71 -0.02 1.32 16 7 C -0.13 -1.79 5.73 -26.61 -0.15 -1.94 16 8 C 0.09 1.26 2.46 -26.69 -0.07 1.19 16 9 O -0.34 -6.49 10.04 -35.23 -0.35 -6.84 16 10 C 0.03 0.59 4.50 -26.22 -0.12 0.48 16 11 C 0.11 2.37 8.52 -8.51 -0.07 2.29 16 12 N -0.60 -16.03 3.78 -184.80 -0.70 -16.73 16 13 C -0.21 -6.15 10.75 -15.06 -0.16 -6.31 16 14 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 15 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 16 N -0.92 -28.02 11.51 55.49 0.64 -27.38 16 17 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 C 0.14 3.24 7.24 -8.51 -0.06 3.18 16 22 C -0.16 -1.69 5.69 -26.60 -0.15 -1.84 16 23 C 0.11 0.90 6.34 -3.70 -0.02 0.88 16 24 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 27 H 0.09 0.59 7.69 -51.93 -0.40 0.19 16 28 H 0.09 0.51 7.94 -51.93 -0.41 0.10 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.23 7.01 -51.93 -0.36 0.87 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.77 7.71 -51.93 -0.40 0.37 16 34 H 0.06 0.93 7.76 -51.93 -0.40 0.53 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 2.07 7.12 -51.93 -0.37 1.70 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.51 5.93 -51.93 -0.31 0.20 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -35.06 344.33 -8.75 -43.81 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -7.27 Total: -3.12 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.80 Total: 2.77 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.57 Total: -51.23 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.27 Total: -15.17 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.06 -8.75 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093492004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.943 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds