Wall clock time and date at job start Tue Mar 31 2020 02:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00005 * 2 1 4 4 C 1.52999 * 109.47007 * 125.00582 * 3 2 1 5 5 C 1.53004 * 109.47155 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47006 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00379 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00168 * 179.97438 * 6 5 4 9 9 C 1.46492 * 120.00185 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46145 * 34.97132 * 9 8 6 11 11 C 1.53044 * 109.46004 * 274.99866 * 9 8 6 12 12 C 1.53188 * 109.31144 * 178.62729 * 11 9 8 13 13 N 1.46924 * 108.77660 * 54.63990 * 12 11 9 14 14 C 1.36935 * 120.63266 * 126.36881 * 13 12 11 15 15 H 1.08010 * 119.99658 * 332.45023 * 14 13 12 16 16 C 1.38810 * 120.00425 * 152.18100 * 14 13 12 17 17 N 1.31619 * 119.99248 * 343.15714 * 16 14 13 18 18 Si 1.86791 * 120.00349 * 163.16058 * 16 14 13 19 19 H 1.48506 * 109.47397 * 89.99703 * 18 16 14 20 20 H 1.48497 * 109.47016 * 209.99796 * 18 16 14 21 21 H 1.48496 * 109.47229 * 329.99581 * 18 16 14 22 22 C 1.46927 * 118.73666 * 306.64008 * 13 12 11 23 23 C 1.52761 * 109.00479 * 53.30932 * 22 13 12 24 24 H 1.09007 * 109.55704 * 185.55004 * 23 22 13 25 25 O 1.42892 * 109.38701 * 65.51984 * 23 22 13 26 26 H 1.07998 * 119.99624 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00101 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99624 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47191 * 5.00689 * 3 2 1 30 30 H 1.08998 * 109.47660 * 245.00129 * 3 2 1 31 31 H 1.09000 * 109.47787 * 59.99877 * 4 3 2 32 32 H 1.09007 * 109.47120 * 300.00104 * 4 3 2 33 33 H 1.08999 * 109.47173 * 60.00028 * 5 4 3 34 34 H 1.08991 * 109.47208 * 299.99681 * 5 4 3 35 35 H 0.96999 * 119.99689 * 0.02562 * 8 6 5 36 36 H 1.09003 * 109.49401 * 58.67862 * 11 9 8 37 37 H 1.08993 * 109.49870 * 298.58039 * 11 9 8 38 38 H 1.09004 * 109.59286 * 294.85005 * 12 11 9 39 39 H 1.09012 * 109.58665 * 174.42760 * 12 11 9 40 40 H 0.97005 * 119.99823 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.58334 * 173.14400 * 22 13 12 42 42 H 1.09008 * 109.58397 * 293.57061 * 22 13 12 43 43 H 0.96696 * 114.00700 * 60.13917 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 6 3.7997 2.6583 1.1819 6 6 4.7563 2.6860 2.3461 7 8 4.8206 1.7388 3.1009 8 7 5.5412 3.7629 2.5480 9 6 6.4714 3.7896 3.6793 10 1 6.8624 2.7868 3.8517 11 6 5.7370 4.2728 4.9320 12 6 6.7039 4.2668 6.1202 13 7 7.8881 5.0630 5.7703 14 6 8.3046 6.0865 6.5790 15 1 7.5909 6.6107 7.1974 16 6 9.6448 6.4467 6.6082 17 7 10.5576 5.6242 6.1363 18 14 10.1528 8.0986 7.3170 19 1 10.4165 7.9532 8.7713 20 1 11.3843 8.5721 6.6355 21 1 9.0615 9.0837 7.1080 22 6 8.6134 4.7439 4.5330 23 6 7.6283 4.7410 3.3655 24 1 8.1366 4.4095 2.4599 25 8 7.1200 6.0621 3.1705 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4027 -0.9313 31 1 3.7401 0.5065 1.0920 32 1 2.4774 1.2354 2.1130 33 1 3.0945 3.4845 1.2719 34 1 4.3574 2.7563 0.2507 35 1 5.4900 4.5203 1.9441 36 1 4.8989 3.6080 5.1416 37 1 5.3671 5.2851 4.7692 38 1 7.0045 3.2427 6.3416 39 1 6.2149 4.7027 6.9915 40 1 11.4943 5.8758 6.1570 41 1 9.3840 5.4945 4.3573 42 1 9.0729 3.7594 4.6223 43 1 7.7997 6.7192 2.9673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099976605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:36 Heat of formation + Delta-G solvation = -62.117531 kcal Electronic energy + Delta-G solvation = -22502.334793 eV Core-core repulsion = 19161.973965 eV Total energy + Delta-G solvation = -3340.360828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.80204 -38.03339 -36.15319 -34.79433 -34.25140 -32.62894 -31.94782 -29.51900 -29.09611 -27.31971 -24.98625 -22.74317 -22.17414 -21.45553 -20.19791 -19.89570 -19.26719 -17.35638 -16.73449 -16.08760 -16.00727 -15.44998 -15.17844 -14.86925 -14.30056 -13.93720 -13.83616 -13.63676 -13.48926 -13.18882 -12.91596 -12.51028 -12.06034 -12.00983 -11.88672 -11.70761 -11.26561 -11.15827 -11.08827 -10.86595 -10.78986 -10.59982 -10.46934 -10.17634 -10.05161 -9.77059 -9.61695 -9.49141 -9.17458 -8.66229 -8.49482 -6.68356 -5.82227 -3.22708 2.03165 2.84960 3.34878 3.42388 3.43957 3.45808 4.47323 4.55085 4.71578 4.77895 4.89595 5.01174 5.08475 5.28358 5.31237 5.37250 5.44180 5.47606 5.52813 5.56859 5.59266 5.70203 5.95993 5.98503 6.05923 6.17673 6.22954 6.31632 6.38217 6.47749 6.52145 6.57507 6.79632 6.88979 6.99446 7.17174 7.42413 7.76368 7.81050 8.23579 8.42307 8.47870 9.17373 9.80584 10.37578 11.26761 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.049415 B = 0.002995 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.488383 B = 9346.009534 C = 9458.311237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.099 4.099 5 C -0.141 4.141 6 C 0.506 3.494 7 O -0.546 6.546 8 N -0.720 5.720 9 C 0.161 3.839 10 H 0.089 0.911 11 C -0.136 4.136 12 C 0.148 3.852 13 N -0.583 5.583 14 C -0.242 4.242 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.908 5.908 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.145 3.855 23 C 0.074 3.926 24 H 0.043 0.957 25 O -0.560 6.560 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.401 0.599 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.020 0.980 39 H 0.057 0.943 40 H 0.253 0.747 41 H 0.095 0.905 42 H 0.027 0.973 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -5.098 -13.893 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.292 3.708 7 O -0.424 6.424 8 N -0.371 5.371 9 C 0.058 3.942 10 H 0.107 0.893 11 C -0.176 4.176 12 C 0.021 3.979 13 N -0.305 5.305 14 C -0.372 4.372 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.553 5.553 18 Si 0.733 3.267 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.018 3.982 23 C 0.012 3.988 24 H 0.061 0.939 25 O -0.366 6.366 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.045 0.955 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -13.566 -6.048 -13.199 19.870 hybrid contribution 0.921 1.449 -0.061 1.718 sum -12.645 -4.599 -13.259 18.891 Atomic orbital electron populations 1.23841 0.95992 1.01745 1.02079 1.22982 0.96026 0.98666 0.99058 1.20814 0.98244 0.95404 0.98877 1.21272 0.97638 0.96376 0.98420 1.21696 0.98355 1.00427 0.97642 1.20697 0.81223 0.82477 0.86373 1.90696 1.68226 1.35722 1.47778 1.46252 1.40740 1.19244 1.30837 1.20986 0.88651 0.98799 0.85814 0.89311 1.22291 0.98537 1.01124 0.95634 1.20899 0.88192 0.94450 0.94368 1.43863 1.29273 1.36157 1.21221 1.19172 0.91055 1.07237 1.19698 0.91707 1.25025 0.95783 0.98658 1.00513 1.70022 1.00107 1.34288 1.50860 0.86288 0.77710 0.84078 0.78666 1.21442 1.21649 1.20499 1.21350 0.92582 1.00609 0.83663 1.22759 0.94656 0.82832 0.98519 0.93947 1.86342 1.38079 1.18285 1.93852 0.88665 0.88656 0.87375 0.91485 0.90950 0.91057 0.91067 0.89108 0.89142 0.76489 0.92959 0.91277 0.96259 0.92481 0.93663 0.88650 0.95537 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 14.32 29.01 0.42 -1.10 16 2 C -0.15 -1.22 9.52 -36.03 -0.34 -1.56 16 3 C -0.10 -0.75 5.66 -27.88 -0.16 -0.91 16 4 C -0.10 -0.99 4.49 -26.73 -0.12 -1.11 16 5 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 6 C 0.51 7.33 7.79 -10.98 -0.09 7.25 16 7 O -0.55 -10.12 15.64 5.55 0.09 -10.03 16 8 N -0.72 -10.49 5.05 -53.77 -0.27 -10.76 16 9 C 0.16 2.88 2.20 -67.89 -0.15 2.73 16 10 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 11 C -0.14 -2.60 5.51 -26.61 -0.15 -2.75 16 12 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 13 N -0.58 -14.43 2.94 -172.57 -0.51 -14.94 16 14 C -0.24 -6.55 9.58 -15.06 -0.14 -6.70 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 16 C 0.00 -0.06 4.92 -17.43 -0.09 -0.14 16 17 N -0.91 -25.70 11.18 55.49 0.62 -25.08 16 18 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.15 3.30 4.91 -3.93 -0.02 3.29 16 23 C 0.07 1.33 3.37 -26.83 -0.09 1.24 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 O -0.56 -9.79 12.08 -35.23 -0.43 -10.22 16 26 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 27 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.11 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.40 5.02 8.25 -40.82 -0.34 4.68 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.39 7.61 -51.93 -0.40 0.99 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 1.23 7.93 -51.92 -0.41 0.82 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.10 2.37 6.05 -51.93 -0.31 2.06 16 42 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.37 5.68 9.08 45.56 0.41 6.09 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -31.34 349.94 -7.81 -39.15 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.45 Total: 8.37 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.11 Total: 1.92 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.16 Total: -50.77 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.34 Total: -20.25 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.34 -7.81 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099976605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.966 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds