Wall clock time and date at job start Tue Mar 31 2020 02:04:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50701 * 119.99869 * 2 1
4 4 C 1.53002 * 109.46847 * 124.99988 * 3 2 1
5 5 C 1.53008 * 109.47070 * 179.97438 * 4 3 2
6 6 C 1.50700 * 109.47148 * 180.02562 * 5 4 3
7 7 O 1.21277 * 119.99933 * 0.02562 * 6 5 4
8 8 N 1.34769 * 119.99917 * 180.02562 * 6 5 4
9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5
10 10 H 1.09004 * 109.45026 * 324.96755 * 9 8 6
11 11 C 1.53045 * 109.46169 * 84.92831 * 9 8 6
12 12 C 1.53199 * 109.30578 * 58.65972 * 11 9 8
13 13 N 1.46923 * 108.77441 * 54.63790 * 12 11 9
14 14 C 1.36935 * 120.63134 * 126.41560 * 13 12 11
15 15 H 1.08001 * 119.99703 * 331.79834 * 14 13 12
16 16 C 1.38816 * 120.00298 * 151.80421 * 14 13 12
17 17 N 1.31612 * 119.99500 * 343.08164 * 16 14 13
18 18 Si 1.86794 * 120.00031 * 163.08340 * 16 14 13
19 19 H 1.48504 * 109.47187 * 59.99600 * 18 16 14
20 20 H 1.48497 * 109.47306 * 179.97438 * 18 16 14
21 21 H 1.48497 * 109.47353 * 299.99978 * 18 16 14
22 22 C 1.46928 * 118.73656 * 306.38317 * 13 12 11
23 23 C 1.53040 * 109.46468 * 205.00109 * 9 8 6
24 24 H 1.08996 * 109.50057 * 181.39118 * 23 9 8
25 25 O 1.42902 * 109.49373 * 61.29401 * 23 9 8
26 26 H 1.08003 * 119.99808 * 359.97438 * 1 2 3
27 27 H 1.07996 * 120.00049 * 179.97438 * 1 2 3
28 28 H 1.08003 * 119.99808 * 180.02562 * 2 1 3
29 29 H 1.09000 * 109.47442 * 4.99847 * 3 2 1
30 30 H 1.09003 * 109.47228 * 244.99849 * 3 2 1
31 31 H 1.09000 * 109.47175 * 60.00276 * 4 3 2
32 32 H 1.08995 * 109.47200 * 299.99658 * 4 3 2
33 33 H 1.09000 * 109.46646 * 60.00259 * 5 4 3
34 34 H 1.08995 * 109.46954 * 300.00578 * 5 4 3
35 35 H 0.97005 * 120.00356 * 359.97438 * 8 6 5
36 36 H 1.08997 * 109.50110 * 298.71156 * 11 9 8
37 37 H 1.08994 * 109.52393 * 178.62437 * 11 9 8
38 38 H 1.08999 * 109.58746 * 294.84490 * 12 11 9
39 39 H 1.09000 * 109.69754 * 174.49064 * 12 11 9
40 40 H 0.97002 * 119.99590 * 180.02562 * 17 16 14
41 41 H 1.08996 * 109.59105 * 293.82460 * 22 13 12
42 42 H 1.09004 * 109.58353 * 173.40141 * 22 13 12
43 43 H 0.96708 * 113.99650 * 180.15998 * 25 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 3.0350 1.3331 1.1817
5 6 3.8005 2.6579 1.1813
6 6 4.7579 2.6852 2.3448
7 8 4.8220 1.7381 3.0997
8 7 5.5427 3.7620 2.5465
9 6 6.4738 3.7884 3.6772
10 1 6.0291 3.2686 4.5259
11 6 7.7780 3.0929 3.2801
12 6 8.3824 3.8051 2.0658
13 7 8.5312 5.2325 2.3805
14 6 9.7401 5.8578 2.2301
15 1 10.6558 5.2937 2.3289
16 6 9.7888 7.2167 1.9508
17 7 8.7162 7.8357 1.5051
18 14 11.3765 8.1668 2.2075
19 1 12.4441 7.5865 1.3538
20 1 11.1670 9.5898 1.8386
21 1 11.7808 8.0790 3.6337
22 6 7.3579 5.9765 2.8589
23 6 6.7651 5.2401 4.0643
24 1 7.4769 5.2608 4.8894
25 8 5.5514 5.8797 4.4642
26 1 -0.5400 0.9353 0.0004
27 1 -0.5400 -0.9353 -0.0004
28 1 1.8500 -0.9353 -0.0004
29 1 1.3586 2.1317 0.0895
30 1 2.6213 1.4026 -0.9314
31 1 3.7400 0.5066 1.0921
32 1 2.4772 1.2356 2.1130
33 1 3.0958 3.4846 1.2707
34 1 4.3582 2.7550 0.2499
35 1 5.4918 4.5194 1.9426
36 1 7.5733 2.0527 3.0271
37 1 8.4805 3.1334 4.1125
38 1 7.7219 3.6871 1.2069
39 1 9.3587 3.3776 1.8375
40 1 8.7502 8.7852 1.3096
41 1 6.6139 6.0356 2.0646
42 1 7.6587 6.9811 3.1562
43 1 5.6610 6.8055 4.7215
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001099976606.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:04:38
Heat of formation + Delta-G solvation = -62.502782 kcal
Electronic energy + Delta-G solvation = -22787.726448 eV
Core-core repulsion = 19447.348914 eV
Total energy + Delta-G solvation = -3340.377534 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-39.82125 -37.96526 -36.03517 -35.29424 -34.03504 -32.52313 -31.82127 -29.71367
-28.91666 -27.15768 -25.27627 -22.70959 -22.14256 -21.68991 -20.27008 -19.90207
-18.69505 -17.13127 -16.80244 -16.53455 -15.96071 -15.24063 -15.14052 -14.93110
-14.23503 -13.99548 -13.86495 -13.69732 -13.39854 -13.29734 -12.72607 -12.48940
-12.20987 -11.86261 -11.77386 -11.66003 -11.55622 -11.10756 -11.02361 -11.00184
-10.83868 -10.74058 -10.46365 -10.24212 -10.02215 -9.67819 -9.54417 -9.41557
-9.31454 -8.65981 -8.51864 -6.80425 -5.91866 -3.35445 2.11124 3.00697
3.31014 3.37200 3.38504 3.58646 4.37977 4.59185 4.66122 4.85143
4.98087 5.11989 5.21868 5.23465 5.39030 5.40032 5.48370 5.55495
5.67376 5.69764 5.71736 5.79808 5.83283 5.92739 6.03331 6.10412
6.24724 6.29344 6.44729 6.45783 6.46605 6.60625 6.70304 6.80334
6.99292 7.04155 7.38302 7.68024 7.94930 8.08270 8.32147 8.61798
9.06953 9.69679 10.25727 11.16280
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.028117 B = 0.003484 C = 0.003410
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 995.602440 B = 8034.877843 C = 8209.682267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.147 4.147
3 C -0.097 4.097
4 C -0.097 4.097
5 C -0.142 4.142
6 C 0.511 3.489
7 O -0.556 6.556
8 N -0.706 5.706
9 C 0.165 3.835
10 H 0.077 0.923
11 C -0.144 4.144
12 C 0.146 3.854
13 N -0.588 5.588
14 C -0.256 4.256
15 H 0.067 0.933
16 C 0.003 3.997
17 N -0.903 5.903
18 Si 0.904 3.096
19 H -0.282 1.282
20 H -0.290 1.290
21 H -0.283 1.283
22 C 0.147 3.853
23 C 0.066 3.934
24 H 0.061 0.939
25 O -0.573 6.573
26 H 0.095 0.905
27 H 0.094 0.906
28 H 0.108 0.892
29 H 0.067 0.933
30 H 0.073 0.927
31 H 0.070 0.930
32 H 0.069 0.931
33 H 0.091 0.909
34 H 0.092 0.908
35 H 0.404 0.596
36 H 0.064 0.936
37 H 0.069 0.931
38 H 0.020 0.980
39 H 0.056 0.944
40 H 0.255 0.745
41 H 0.025 0.975
42 H 0.092 0.908
43 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.029 -8.233 -0.902 13.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.165 4.165
3 C -0.134 4.134
4 C -0.135 4.135
5 C -0.182 4.182
6 C 0.298 3.702
7 O -0.435 6.435
8 N -0.358 5.358
9 C 0.060 3.940
10 H 0.095 0.905
11 C -0.184 4.184
12 C 0.020 3.980
13 N -0.312 5.312
14 C -0.385 4.385
15 H 0.085 0.915
16 C -0.195 4.195
17 N -0.547 5.547
18 Si 0.734 3.266
19 H -0.208 1.208
20 H -0.216 1.216
21 H -0.210 1.210
22 C 0.020 3.980
23 C 0.006 3.994
24 H 0.079 0.921
25 O -0.377 6.377
26 H 0.113 0.887
27 H 0.113 0.887
28 H 0.126 0.874
29 H 0.085 0.915
30 H 0.092 0.908
31 H 0.089 0.911
32 H 0.088 0.912
33 H 0.109 0.891
34 H 0.110 0.890
35 H 0.240 0.760
36 H 0.082 0.918
37 H 0.087 0.913
38 H 0.038 0.962
39 H 0.075 0.925
40 H 0.065 0.935
41 H 0.043 0.957
42 H 0.110 0.890
43 H 0.222 0.778
Dipole moment (debyes) X Y Z Total
from point charges -11.227 -9.300 -0.547 14.589
hybrid contribution 1.060 1.543 -0.087 1.875
sum -10.167 -7.756 -0.634 12.803
Atomic orbital electron populations
1.23830 0.95996 1.01685 1.02332 1.22993 0.96009 0.98697 0.98841
1.20827 0.98284 0.95311 0.99025 1.21250 0.97542 0.96449 0.98237
1.21688 0.98389 1.00289 0.97854 1.20600 0.80898 0.82433 0.86292
1.90649 1.69350 1.35650 1.47806 1.46034 1.39654 1.19506 1.30563
1.20778 0.89537 0.95018 0.88685 0.90505 1.22392 0.95961 0.99022
1.01059 1.20915 0.98152 0.85655 0.93299 1.43956 1.07642 1.04443
1.75163 1.19163 0.84493 0.92119 1.42752 0.91486 1.25064 0.97279
0.98325 0.98871 1.70000 1.28505 1.09967 1.46238 0.86340 0.83094
0.78938 0.78231 1.20786 1.21590 1.20967 1.21387 0.88423 0.96715
0.91474 1.22941 0.85402 0.92298 0.98807 0.92149 1.86416 1.33385
1.29140 1.88807 0.88667 0.88728 0.87417 0.91461 0.90836 0.91131
0.91227 0.89089 0.88956 0.76005 0.91767 0.91253 0.96224 0.92527
0.93460 0.95743 0.89024 0.77791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.69 14.32 29.01 0.42 -1.28 16
2 C -0.15 -1.34 9.52 -36.03 -0.34 -1.68 16
3 C -0.10 -0.89 5.66 -27.88 -0.16 -1.05 16
4 C -0.10 -1.10 4.49 -26.73 -0.12 -1.22 16
5 C -0.14 -1.68 5.70 -27.88 -0.16 -1.84 16
6 C 0.51 8.23 7.79 -10.99 -0.09 8.14 16
7 O -0.56 -10.67 15.64 5.56 0.09 -10.58 16
8 N -0.71 -11.76 4.15 -53.77 -0.22 -11.99 16
9 C 0.16 2.97 2.47 -67.89 -0.17 2.80 16
10 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16
11 C -0.14 -2.60 5.77 -26.61 -0.15 -2.75 16
12 C 0.15 2.96 6.26 -3.71 -0.02 2.93 16
13 N -0.59 -13.79 2.99 -172.32 -0.52 -14.30 16
14 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16
15 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16
16 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16
17 N -0.90 -24.67 11.20 55.49 0.62 -24.04 16
18 Si 0.90 20.79 29.59 -169.99 -5.03 15.77 16
19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
22 C 0.15 3.19 4.63 -3.71 -0.02 3.17 16
23 C 0.07 1.23 3.36 -26.61 -0.09 1.14 16
24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
25 O -0.57 -9.74 13.21 -35.23 -0.47 -10.20 16
26 H 0.10 0.74 7.84 -52.48 -0.41 0.33 16
27 H 0.09 0.69 8.06 -52.49 -0.42 0.27 16
28 H 0.11 0.92 8.06 -52.48 -0.42 0.50 16
29 H 0.07 0.58 7.79 -51.93 -0.40 0.17 16
30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16
32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16
33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
35 H 0.40 6.64 6.87 -40.82 -0.28 6.36 16
36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
38 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16
39 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16
40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16
41 H 0.02 0.55 6.64 -51.93 -0.34 0.21 16
42 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16
43 H 0.38 5.09 9.08 45.56 0.41 5.51 16
LS Contribution 347.45 15.07 5.24 5.24
Total: -1.00 -30.03 347.45 -7.74 -37.77
By element:
Atomic # 1 Polarization: 17.11 SS G_CDS: -6.32 Total: 10.79 kcal
Atomic # 6 Polarization: 2.69 SS G_CDS: -1.13 Total: 1.56 kcal
Atomic # 7 Polarization: -50.22 SS G_CDS: -0.12 Total: -50.34 kcal
Atomic # 8 Polarization: -20.41 SS G_CDS: -0.38 Total: -20.79 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.77 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -30.03 -7.74 -37.77 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099976606.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.733 kcal
(2) G-P(sol) polarization free energy of solvation -30.028 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.761 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds