Wall clock time and date at job start Tue Mar 31 2020 02:04:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50701 * 119.99869 * 2 1
4 4 C 1.53002 * 109.46847 * 124.99988 * 3 2 1
5 5 C 1.53008 * 109.47070 * 179.97438 * 4 3 2
6 6 C 1.50700 * 109.47148 * 180.02562 * 5 4 3
7 7 O 1.21277 * 119.99933 * 0.02562 * 6 5 4
8 8 N 1.34769 * 119.99917 * 180.02562 * 6 5 4
9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5
10 10 H 1.09004 * 109.45026 * 324.96755 * 9 8 6
11 11 C 1.53045 * 109.46169 * 84.92831 * 9 8 6
12 12 C 1.53199 * 109.30578 * 58.65972 * 11 9 8
13 13 N 1.46923 * 108.77441 * 54.63790 * 12 11 9
14 14 C 1.36935 * 120.63134 * 126.41560 * 13 12 11
15 15 H 1.08001 * 119.99703 * 331.79834 * 14 13 12
16 16 C 1.38816 * 120.00298 * 151.80421 * 14 13 12
17 17 N 1.31612 * 119.99500 * 343.08164 * 16 14 13
18 18 Si 1.86794 * 120.00031 * 163.08340 * 16 14 13
19 19 H 1.48504 * 109.47187 * 59.99600 * 18 16 14
20 20 H 1.48497 * 109.47306 * 179.97438 * 18 16 14
21 21 H 1.48497 * 109.47353 * 299.99978 * 18 16 14
22 22 C 1.46928 * 118.73656 * 306.38317 * 13 12 11
23 23 C 1.53040 * 109.46468 * 205.00109 * 9 8 6
24 24 H 1.08996 * 109.50057 * 181.39118 * 23 9 8
25 25 O 1.42902 * 109.49373 * 61.29401 * 23 9 8
26 26 H 1.08003 * 119.99808 * 359.97438 * 1 2 3
27 27 H 1.07996 * 120.00049 * 179.97438 * 1 2 3
28 28 H 1.08003 * 119.99808 * 180.02562 * 2 1 3
29 29 H 1.09000 * 109.47442 * 4.99847 * 3 2 1
30 30 H 1.09003 * 109.47228 * 244.99849 * 3 2 1
31 31 H 1.09000 * 109.47175 * 60.00276 * 4 3 2
32 32 H 1.08995 * 109.47200 * 299.99658 * 4 3 2
33 33 H 1.09000 * 109.46646 * 60.00259 * 5 4 3
34 34 H 1.08995 * 109.46954 * 300.00578 * 5 4 3
35 35 H 0.97005 * 120.00356 * 359.97438 * 8 6 5
36 36 H 1.08997 * 109.50110 * 298.71156 * 11 9 8
37 37 H 1.08994 * 109.52393 * 178.62437 * 11 9 8
38 38 H 1.08999 * 109.58746 * 294.84490 * 12 11 9
39 39 H 1.09000 * 109.69754 * 174.49064 * 12 11 9
40 40 H 0.97002 * 119.99590 * 180.02562 * 17 16 14
41 41 H 1.08996 * 109.59105 * 293.82460 * 22 13 12
42 42 H 1.09004 * 109.58353 * 173.40141 * 22 13 12
43 43 H 0.96708 * 113.99650 * 180.15998 * 25 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 3.0350 1.3331 1.1817
5 6 3.8005 2.6579 1.1813
6 6 4.7579 2.6852 2.3448
7 8 4.8220 1.7381 3.0997
8 7 5.5427 3.7620 2.5465
9 6 6.4738 3.7884 3.6772
10 1 6.0291 3.2686 4.5259
11 6 7.7780 3.0929 3.2801
12 6 8.3824 3.8051 2.0658
13 7 8.5312 5.2325 2.3805
14 6 9.7401 5.8578 2.2301
15 1 10.6558 5.2937 2.3289
16 6 9.7888 7.2167 1.9508
17 7 8.7162 7.8357 1.5051
18 14 11.3765 8.1668 2.2075
19 1 12.4441 7.5865 1.3538
20 1 11.1670 9.5898 1.8386
21 1 11.7808 8.0790 3.6337
22 6 7.3579 5.9765 2.8589
23 6 6.7651 5.2401 4.0643
24 1 7.4769 5.2608 4.8894
25 8 5.5514 5.8797 4.4642
26 1 -0.5400 0.9353 0.0004
27 1 -0.5400 -0.9353 -0.0004
28 1 1.8500 -0.9353 -0.0004
29 1 1.3586 2.1317 0.0895
30 1 2.6213 1.4026 -0.9314
31 1 3.7400 0.5066 1.0921
32 1 2.4772 1.2356 2.1130
33 1 3.0958 3.4846 1.2707
34 1 4.3582 2.7550 0.2499
35 1 5.4918 4.5194 1.9426
36 1 7.5733 2.0527 3.0271
37 1 8.4805 3.1334 4.1125
38 1 7.7219 3.6871 1.2069
39 1 9.3587 3.3776 1.8375
40 1 8.7502 8.7852 1.3096
41 1 6.6139 6.0356 2.0646
42 1 7.6587 6.9811 3.1562
43 1 5.6610 6.8055 4.7215
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001099976606.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:04:38
Heat of formation + Delta-G solvation = -82.589135 kcal
Electronic energy + Delta-G solvation = -22788.597457 eV
Core-core repulsion = 19447.348914 eV
Total energy + Delta-G solvation = -3341.248543 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.20981 -39.42208 -36.88039 -36.83440 -35.61479 -33.78915 -33.16868 -31.34376
-30.49425 -28.17223 -27.02312 -24.17005 -23.56491 -23.13187 -21.42892 -20.65052
-20.23474 -18.83253 -18.14646 -18.04201 -16.98443 -16.82079 -16.57575 -16.04603
-15.82274 -15.51508 -15.18503 -15.01007 -14.77410 -14.40233 -14.14638 -13.86994
-13.52076 -13.39681 -13.15612 -12.87196 -12.68040 -12.63218 -12.58780 -12.44250
-12.19251 -11.97319 -11.82785 -11.74582 -11.60408 -11.26556 -10.97810 -10.74554
-10.57437 -10.16309 -9.96671 -8.70135 -7.89853 -5.35610 1.44397 1.48899
1.50727 1.57041 1.74074 2.31893 2.50289 3.14354 3.27214 3.67050
3.81021 3.88851 3.98178 4.09213 4.15424 4.26802 4.35242 4.37050
4.41639 4.46745 4.66673 4.69786 4.72174 4.78235 4.93255 4.95957
4.97637 5.08703 5.10567 5.16921 5.25485 5.32451 5.41743 5.59169
5.60741 5.65606 5.80565 5.93754 6.35253 6.63701 6.82500 7.12652
7.32559 7.80330 8.32195 9.15614
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.028117 B = 0.003484 C = 0.003410
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 995.602440 B = 8034.877843 C = 8209.682267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.165 4.165
3 C -0.091 4.091
4 C -0.091 4.091
5 C -0.135 4.135
6 C 0.507 3.493
7 O -0.589 6.589
8 N -0.706 5.706
9 C 0.167 3.833
10 H 0.070 0.930
11 C -0.131 4.131
12 C 0.148 3.852
13 N -0.603 5.603
14 C -0.267 4.267
15 H 0.066 0.934
16 C -0.042 4.042
17 N -0.928 5.928
18 Si 0.964 3.036
19 H -0.279 1.279
20 H -0.294 1.294
21 H -0.279 1.279
22 C 0.159 3.841
23 C 0.084 3.916
24 H 0.059 0.941
25 O -0.573 6.573
26 H 0.101 0.899
27 H 0.104 0.896
28 H 0.108 0.892
29 H 0.076 0.924
30 H 0.083 0.917
31 H 0.057 0.943
32 H 0.053 0.947
33 H 0.111 0.889
34 H 0.110 0.890
35 H 0.406 0.594
36 H 0.070 0.930
37 H 0.072 0.928
38 H 0.020 0.980
39 H 0.055 0.945
40 H 0.252 0.748
41 H 0.014 0.986
42 H 0.064 0.936
43 H 0.391 0.609
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.603 -8.454 -1.175 14.404
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.183 4.183
3 C -0.128 4.128
4 C -0.129 4.129
5 C -0.174 4.174
6 C 0.296 3.704
7 O -0.470 6.470
8 N -0.357 5.357
9 C 0.061 3.939
10 H 0.088 0.912
11 C -0.171 4.171
12 C 0.022 3.978
13 N -0.327 5.327
14 C -0.397 4.397
15 H 0.084 0.916
16 C -0.239 4.239
17 N -0.573 5.573
18 Si 0.792 3.208
19 H -0.204 1.204
20 H -0.220 1.220
21 H -0.205 1.205
22 C 0.032 3.968
23 C 0.023 3.977
24 H 0.077 0.923
25 O -0.380 6.380
26 H 0.120 0.880
27 H 0.122 0.878
28 H 0.126 0.874
29 H 0.094 0.906
30 H 0.101 0.899
31 H 0.076 0.924
32 H 0.072 0.928
33 H 0.129 0.871
34 H 0.129 0.871
35 H 0.242 0.758
36 H 0.089 0.911
37 H 0.090 0.910
38 H 0.038 0.962
39 H 0.074 0.926
40 H 0.061 0.939
41 H 0.032 0.968
42 H 0.082 0.918
43 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges -11.811 -9.525 -0.818 15.195
hybrid contribution 1.196 1.582 0.000 1.983
sum -10.615 -7.943 -0.818 13.283
Atomic orbital electron populations
1.24014 0.95875 1.02531 1.01074 1.23075 0.96436 0.98779 0.99989
1.20772 0.97984 0.95743 0.98291 1.21177 0.97467 0.95693 0.98555
1.21736 0.97912 1.01272 0.96528 1.21342 0.80795 0.81438 0.86822
1.90634 1.70341 1.36739 1.49287 1.46046 1.39587 1.19900 1.30151
1.20664 0.89746 0.94359 0.89105 0.91210 1.22241 0.95889 0.98934
1.00055 1.20961 0.98332 0.84224 0.94253 1.44159 1.07393 1.05573
1.75608 1.19435 0.85526 0.92568 1.42172 0.91647 1.25714 0.99936
0.99086 0.99121 1.70125 1.30058 1.09782 1.47346 0.85401 0.79959
0.77302 0.78106 1.20450 1.21999 1.20538 1.21193 0.87690 0.95653
0.92241 1.22598 0.85711 0.92246 0.97187 0.92323 1.86394 1.32469
1.30537 1.88600 0.88030 0.87768 0.87387 0.90567 0.89904 0.92415
0.92801 0.87110 0.87134 0.75772 0.91138 0.90952 0.96171 0.92625
0.93916 0.96780 0.91754 0.75972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.97 14.32 67.78 0.97 -2.00 16
2 C -0.16 -2.76 9.52 25.65 0.24 -2.51 16
3 C -0.09 -1.49 5.66 29.85 0.17 -1.32 16
4 C -0.09 -1.94 4.49 30.60 0.14 -1.81 16
5 C -0.13 -2.94 5.70 29.85 0.17 -2.77 16
6 C 0.51 15.75 7.79 87.66 0.68 16.43 16
7 O -0.59 -22.28 15.64 -3.02 -0.05 -22.33 16
8 N -0.71 -22.73 4.15 -442.42 -1.84 -24.56 16
9 C 0.17 5.85 2.47 45.02 0.11 5.96 16
10 H 0.07 2.60 7.58 -2.38 -0.02 2.58 16
11 C -0.13 -4.59 5.77 30.68 0.18 -4.41 16
12 C 0.15 5.88 6.26 86.37 0.54 6.42 16
13 N -0.60 -28.11 2.99 -699.10 -2.09 -30.20 16
14 C -0.27 -13.87 9.58 84.03 0.81 -13.06 16
15 H 0.07 3.35 7.88 -2.91 -0.02 3.33 16
16 C -0.04 -2.23 4.92 84.86 0.42 -1.81 16
17 N -0.93 -50.93 11.20 21.65 0.24 -50.69 16
18 Si 0.96 42.64 29.59 68.60 2.03 44.67 16
19 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16
20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16
21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16
22 C 0.16 6.88 4.63 86.36 0.40 7.28 16
23 C 0.08 3.02 3.36 30.67 0.10 3.13 16
24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
25 O -0.57 -18.74 13.21 -148.98 -1.97 -20.71 16
26 H 0.10 1.37 7.84 -2.91 -0.02 1.35 16
27 H 0.10 1.33 8.06 -2.91 -0.02 1.31 16
28 H 0.11 1.76 8.06 -2.91 -0.02 1.73 16
29 H 0.08 1.12 7.79 -2.39 -0.02 1.10 16
30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
31 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16
32 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16
33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16
34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16
35 H 0.41 12.87 6.87 -92.70 -0.64 12.23 16
36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16
38 H 0.02 0.81 7.74 -2.39 -0.02 0.79 16
39 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16
40 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16
41 H 0.01 0.64 6.64 -2.39 -0.02 0.63 16
42 H 0.06 3.15 6.06 -2.38 -0.01 3.14 16
43 H 0.39 10.10 9.08 -74.05 -0.67 9.42 16
Total: -1.00 -63.00 347.45 0.94 -62.06
By element:
Atomic # 1 Polarization: 32.56 SS G_CDS: -0.31 Total: 32.25 kcal
Atomic # 6 Polarization: 4.60 SS G_CDS: 4.93 Total: 9.52 kcal
Atomic # 7 Polarization: -101.77 SS G_CDS: -3.69 Total: -105.45 kcal
Atomic # 8 Polarization: -41.02 SS G_CDS: -2.02 Total: -43.04 kcal
Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal
Total: -63.00 0.94 -62.06 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099976606.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.532 kcal
(2) G-P(sol) polarization free energy of solvation -63.000 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.589 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds