Wall clock time and date at job start Tue Mar 31 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00449 * 2 1 4 4 C 1.53001 * 109.46997 * 125.00201 * 3 2 1 5 5 C 1.52998 * 109.47030 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.47020 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00093 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99938 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99848 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.44638 * 324.96547 * 9 8 6 11 11 C 1.53035 * 109.45813 * 84.93196 * 9 8 6 12 12 C 1.52764 * 109.37934 * 181.25842 * 11 9 8 13 13 N 1.46926 * 109.01135 * 305.58582 * 12 11 9 14 14 C 1.36928 * 120.63170 * 233.58503 * 13 12 11 15 15 H 1.08001 * 120.00114 * 151.80747 * 14 13 12 16 16 C 1.38812 * 120.00102 * 331.80110 * 14 13 12 17 17 N 1.31617 * 120.00308 * 335.56350 * 16 14 13 18 18 Si 1.86804 * 119.99777 * 155.28945 * 16 14 13 19 19 H 1.48503 * 109.46743 * 180.27744 * 18 16 14 20 20 H 1.48500 * 109.47225 * 300.27498 * 18 16 14 21 21 H 1.48501 * 109.47206 * 60.27771 * 18 16 14 22 22 C 1.46929 * 118.73483 * 53.31107 * 13 12 11 23 23 C 1.53040 * 109.45829 * 205.00299 * 9 8 6 24 24 H 1.09001 * 109.49505 * 298.56262 * 23 9 8 25 25 O 1.42897 * 109.50012 * 58.66025 * 23 9 8 26 26 H 1.08000 * 120.00259 * 179.97438 * 1 2 3 27 27 H 1.08009 * 119.99809 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99926 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46934 * 5.00898 * 3 2 1 30 30 H 1.08999 * 109.47755 * 245.00512 * 3 2 1 31 31 H 1.09000 * 109.47407 * 60.00357 * 4 3 2 32 32 H 1.09001 * 109.47333 * 300.00205 * 4 3 2 33 33 H 1.09003 * 109.47287 * 60.00460 * 5 4 3 34 34 H 1.08999 * 109.47369 * 300.00095 * 5 4 3 35 35 H 0.97003 * 119.99802 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.50055 * 301.33289 * 11 9 8 37 37 H 1.09001 * 109.50167 * 61.43701 * 11 9 8 38 38 H 1.09003 * 109.51000 * 185.70458 * 12 11 9 39 39 H 1.09005 * 109.43274 * 65.43079 * 12 11 9 40 40 H 0.97007 * 119.99706 * 353.96844 * 17 16 14 41 41 H 1.09001 * 109.58752 * 66.42659 * 22 13 12 42 42 H 1.08997 * 109.58400 * 186.71234 * 22 13 12 43 43 H 0.96697 * 113.99811 * 179.83931 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6581 1.1820 6 6 4.7563 2.6858 2.3463 7 8 4.8204 1.7387 3.1010 8 7 5.5412 3.7627 2.5481 9 6 6.4714 3.7893 3.6795 10 1 6.0259 3.2700 4.5280 11 6 7.7758 3.0937 3.2836 12 6 8.7326 3.0949 4.4745 13 7 8.9042 4.4747 4.9492 14 6 10.1549 5.0158 5.0836 15 1 10.2960 6.0816 4.9815 16 6 11.2414 4.1944 5.3513 17 7 11.0580 3.0310 5.9388 18 14 12.9631 4.7369 4.8708 19 1 13.9390 3.6863 5.2571 20 1 13.0227 4.9520 3.4027 21 1 13.2964 6.0035 5.5706 22 6 7.7081 5.2649 5.2711 23 6 6.7625 5.2412 4.0661 24 1 7.2307 5.7544 3.2262 25 8 5.5401 5.8985 4.4061 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4026 -0.9314 31 1 3.7400 0.5063 1.0920 32 1 2.4773 1.2354 2.1130 33 1 3.0946 3.4844 1.2719 34 1 4.3575 2.7561 0.2506 35 1 5.4901 4.5200 1.9441 36 1 7.5646 2.0666 2.9861 37 1 8.2345 3.6272 2.4511 38 1 9.6974 2.6917 4.1666 39 1 8.3168 2.4822 5.2744 40 1 10.1776 2.7851 6.2635 41 1 7.2069 4.8328 6.1373 42 1 7.9974 6.2924 5.4912 43 1 5.6498 6.8239 4.6643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099976607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:40 Heat of formation + Delta-G solvation = -66.324666 kcal Electronic energy + Delta-G solvation = -22427.669298 eV Core-core repulsion = 19087.126035 eV Total energy + Delta-G solvation = -3340.543263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86483 -38.16773 -36.16357 -35.63765 -34.38095 -32.63599 -31.90077 -30.10345 -28.66195 -27.26116 -24.89099 -22.84436 -22.29834 -21.47676 -20.24259 -19.98437 -19.38011 -17.64838 -16.83686 -16.82244 -16.06713 -15.93457 -15.18881 -14.53931 -14.37348 -14.02700 -13.83384 -13.61961 -13.58129 -13.45034 -12.96880 -12.61704 -12.40068 -12.11428 -11.94292 -11.83992 -11.67944 -11.12956 -10.93451 -10.87278 -10.85920 -10.71622 -10.41976 -10.16208 -10.02425 -9.81508 -9.65969 -9.54351 -9.32056 -8.75751 -8.41031 -6.99316 -6.13594 -3.32557 2.03309 2.84411 3.36211 3.45705 3.49043 3.67347 4.32145 4.54504 4.56124 4.71720 4.82547 5.00512 5.07572 5.16954 5.22416 5.29954 5.39523 5.42220 5.47175 5.50440 5.56329 5.65531 5.69925 5.83677 5.95964 5.98204 6.16689 6.21266 6.36406 6.38167 6.39232 6.51285 6.52275 6.60810 6.78978 6.96814 7.12181 7.72230 7.80079 7.93588 8.44751 8.49820 9.01793 9.75689 10.18390 11.14971 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.003184 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.661044 B = 8791.625006 C = 9291.060006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.509 3.491 7 O -0.544 6.544 8 N -0.718 5.718 9 C 0.162 3.838 10 H 0.086 0.914 11 C -0.141 4.141 12 C 0.150 3.850 13 N -0.595 5.595 14 C -0.356 4.356 15 H 0.057 0.943 16 C -0.022 4.022 17 N -0.912 5.912 18 Si 1.066 2.934 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.292 1.292 22 C 0.123 3.877 23 C 0.081 3.919 24 H 0.057 0.943 25 O -0.570 6.570 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.396 0.604 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.022 0.978 40 H 0.271 0.729 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.042 1.444 -12.069 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.295 3.705 7 O -0.421 6.421 8 N -0.368 5.368 9 C 0.058 3.942 10 H 0.104 0.896 11 C -0.181 4.181 12 C 0.024 3.976 13 N -0.320 5.320 14 C -0.485 4.485 15 H 0.075 0.925 16 C -0.224 4.224 17 N -0.551 5.551 18 Si 0.895 3.105 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.005 4.005 23 C 0.020 3.980 24 H 0.075 0.925 25 O -0.375 6.375 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.229 0.771 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -14.622 -0.291 -11.689 18.722 hybrid contribution -1.417 1.532 -0.091 2.089 sum -16.039 1.240 -11.780 19.939 Atomic orbital electron populations 1.23837 0.95983 1.01735 1.02132 1.22985 0.96032 0.98686 0.99005 1.20812 0.98217 0.95400 0.98873 1.21275 0.97667 0.96392 0.98424 1.21690 0.98305 1.00457 0.97571 1.20656 0.80885 0.82490 0.86444 1.90704 1.68585 1.35342 1.47466 1.46099 1.40630 1.19336 1.30736 1.20934 0.89671 0.94729 0.88837 0.89569 1.22394 0.94902 0.99770 1.01051 1.20913 0.98143 0.86463 0.92080 1.44085 1.01421 1.10921 1.75596 1.19942 0.84725 0.94292 1.49538 0.92514 1.25912 1.03075 0.96604 0.96847 1.70779 1.26177 1.24018 1.34140 0.83516 0.75669 0.75215 0.76066 1.20992 1.21991 1.21924 1.21524 0.88487 0.96887 0.93595 1.22742 0.84718 0.91995 0.98584 0.92548 1.86476 1.32001 1.28695 1.90309 0.88641 0.88684 0.87339 0.91516 0.90927 0.90985 0.91082 0.89127 0.89095 0.77051 0.91708 0.92055 0.89653 0.96000 0.91842 0.95509 0.92017 0.77942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 14.32 29.02 0.42 -1.14 16 2 C -0.15 -1.25 9.52 -36.02 -0.34 -1.60 16 3 C -0.10 -0.77 5.66 -27.88 -0.16 -0.93 16 4 C -0.10 -1.03 4.49 -26.73 -0.12 -1.15 16 5 C -0.14 -1.41 5.70 -27.88 -0.16 -1.57 16 6 C 0.51 7.61 7.79 -10.98 -0.09 7.52 16 7 O -0.54 -10.48 15.64 5.56 0.09 -10.39 16 8 N -0.72 -10.49 4.92 -53.76 -0.26 -10.75 16 9 C 0.16 2.92 2.12 -67.89 -0.14 2.77 16 10 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 11 C -0.14 -2.76 5.64 -26.83 -0.15 -2.91 16 12 C 0.15 3.55 4.66 -3.93 -0.02 3.53 16 13 N -0.60 -14.61 2.85 -172.58 -0.49 -15.10 16 14 C -0.36 -9.69 9.49 -15.06 -0.14 -9.83 16 15 H 0.06 1.53 7.94 -52.49 -0.42 1.11 16 16 C -0.02 -0.60 4.70 -17.43 -0.08 -0.69 16 17 N -0.91 -27.13 12.41 55.49 0.69 -26.44 16 18 Si 1.07 24.73 29.99 -169.99 -5.10 19.63 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.12 2.51 6.14 -3.71 -0.02 2.49 16 23 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 O -0.57 -8.49 13.16 -35.23 -0.46 -8.96 16 26 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 27 H 0.09 0.67 7.84 -52.48 -0.41 0.26 16 28 H 0.11 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.40 4.68 8.60 -40.82 -0.35 4.33 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.09 2.24 6.32 -51.93 -0.33 1.91 16 39 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 40 H 0.27 8.16 6.70 -40.82 -0.27 7.88 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.37 4.00 9.08 45.56 0.41 4.41 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -32.83 350.60 -7.78 -40.61 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.43 Total: 8.32 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.09 Total: -2.21 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.07 Total: -52.29 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.38 Total: -19.34 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.10 Total: 19.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.83 -7.78 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099976607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.717 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds