Wall clock time and date at job start Tue Mar 31 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00449 * 2 1 4 4 C 1.53001 * 109.46997 * 125.00201 * 3 2 1 5 5 C 1.52998 * 109.47030 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.47020 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00093 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99938 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99848 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.44638 * 324.96547 * 9 8 6 11 11 C 1.53035 * 109.45813 * 84.93196 * 9 8 6 12 12 C 1.52764 * 109.37934 * 181.25842 * 11 9 8 13 13 N 1.46926 * 109.01135 * 305.58582 * 12 11 9 14 14 C 1.36928 * 120.63170 * 233.58503 * 13 12 11 15 15 H 1.08001 * 120.00114 * 151.80747 * 14 13 12 16 16 C 1.38812 * 120.00102 * 331.80110 * 14 13 12 17 17 N 1.31617 * 120.00308 * 335.56350 * 16 14 13 18 18 Si 1.86804 * 119.99777 * 155.28945 * 16 14 13 19 19 H 1.48503 * 109.46743 * 180.27744 * 18 16 14 20 20 H 1.48500 * 109.47225 * 300.27498 * 18 16 14 21 21 H 1.48501 * 109.47206 * 60.27771 * 18 16 14 22 22 C 1.46929 * 118.73483 * 53.31107 * 13 12 11 23 23 C 1.53040 * 109.45829 * 205.00299 * 9 8 6 24 24 H 1.09001 * 109.49505 * 298.56262 * 23 9 8 25 25 O 1.42897 * 109.50012 * 58.66025 * 23 9 8 26 26 H 1.08000 * 120.00259 * 179.97438 * 1 2 3 27 27 H 1.08009 * 119.99809 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99926 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46934 * 5.00898 * 3 2 1 30 30 H 1.08999 * 109.47755 * 245.00512 * 3 2 1 31 31 H 1.09000 * 109.47407 * 60.00357 * 4 3 2 32 32 H 1.09001 * 109.47333 * 300.00205 * 4 3 2 33 33 H 1.09003 * 109.47287 * 60.00460 * 5 4 3 34 34 H 1.08999 * 109.47369 * 300.00095 * 5 4 3 35 35 H 0.97003 * 119.99802 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.50055 * 301.33289 * 11 9 8 37 37 H 1.09001 * 109.50167 * 61.43701 * 11 9 8 38 38 H 1.09003 * 109.51000 * 185.70458 * 12 11 9 39 39 H 1.09005 * 109.43274 * 65.43079 * 12 11 9 40 40 H 0.97007 * 119.99706 * 353.96844 * 17 16 14 41 41 H 1.09001 * 109.58752 * 66.42659 * 22 13 12 42 42 H 1.08997 * 109.58400 * 186.71234 * 22 13 12 43 43 H 0.96697 * 113.99811 * 179.83931 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7997 2.6581 1.1820 6 6 4.7563 2.6858 2.3463 7 8 4.8204 1.7387 3.1010 8 7 5.5412 3.7627 2.5481 9 6 6.4714 3.7893 3.6795 10 1 6.0259 3.2700 4.5280 11 6 7.7758 3.0937 3.2836 12 6 8.7326 3.0949 4.4745 13 7 8.9042 4.4747 4.9492 14 6 10.1549 5.0158 5.0836 15 1 10.2960 6.0816 4.9815 16 6 11.2414 4.1944 5.3513 17 7 11.0580 3.0310 5.9388 18 14 12.9631 4.7369 4.8708 19 1 13.9390 3.6863 5.2571 20 1 13.0227 4.9520 3.4027 21 1 13.2964 6.0035 5.5706 22 6 7.7081 5.2649 5.2711 23 6 6.7625 5.2412 4.0661 24 1 7.2307 5.7544 3.2262 25 8 5.5401 5.8985 4.4061 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4026 -0.9314 31 1 3.7400 0.5063 1.0920 32 1 2.4773 1.2354 2.1130 33 1 3.0946 3.4844 1.2719 34 1 4.3575 2.7561 0.2506 35 1 5.4901 4.5200 1.9441 36 1 7.5646 2.0666 2.9861 37 1 8.2345 3.6272 2.4511 38 1 9.6974 2.6917 4.1666 39 1 8.3168 2.4822 5.2744 40 1 10.1776 2.7851 6.2635 41 1 7.2069 4.8328 6.1373 42 1 7.9974 6.2924 5.4912 43 1 5.6498 6.8239 4.6643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099976607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:39 Heat of formation + Delta-G solvation = -90.373138 kcal Electronic energy + Delta-G solvation = -22428.712118 eV Core-core repulsion = 19087.126035 eV Total energy + Delta-G solvation = -3341.586083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18360 -39.62842 -37.23774 -36.90322 -35.81561 -33.92851 -33.24609 -31.78556 -30.23518 -28.24983 -26.67390 -24.38721 -23.72511 -22.76178 -21.46941 -21.00792 -20.59655 -19.54217 -18.19756 -17.99733 -17.37411 -16.90140 -16.35869 -16.04847 -15.92256 -15.49757 -15.34485 -15.07961 -14.86492 -14.51351 -14.29273 -14.01167 -13.73183 -13.63185 -13.26028 -12.76234 -12.64492 -12.59329 -12.49873 -12.45677 -12.16180 -11.92212 -11.79395 -11.75327 -11.62903 -11.34288 -11.19877 -10.84416 -10.48699 -10.18543 -10.07498 -9.03515 -8.29967 -5.47816 1.42022 1.59368 1.66869 1.67742 1.85567 2.18092 2.62431 3.00775 3.20524 3.47619 3.71923 3.82093 3.85735 3.95269 4.06436 4.08756 4.23737 4.32884 4.33580 4.37738 4.54899 4.64282 4.67132 4.72257 4.74994 4.85045 4.87662 4.93904 4.95152 5.06985 5.08372 5.22889 5.25446 5.38517 5.48260 5.78805 5.78822 5.91327 6.31991 6.59363 6.77968 6.97289 7.30833 7.69238 8.13311 8.95634 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.003184 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.661044 B = 8791.625006 C = 9291.060006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C -0.087 4.087 4 C -0.097 4.097 5 C -0.128 4.128 6 C 0.502 3.498 7 O -0.594 6.594 8 N -0.706 5.706 9 C 0.169 3.831 10 H 0.052 0.948 11 C -0.124 4.124 12 C 0.159 3.841 13 N -0.611 5.611 14 C -0.357 4.357 15 H 0.062 0.938 16 C -0.077 4.077 17 N -0.943 5.943 18 Si 1.118 2.882 19 H -0.296 1.296 20 H -0.275 1.275 21 H -0.273 1.273 22 C 0.118 3.882 23 C 0.104 3.896 24 H 0.074 0.926 25 O -0.569 6.569 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.415 0.585 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.054 0.946 39 H -0.004 1.004 40 H 0.252 0.748 41 H 0.010 0.990 42 H 0.073 0.927 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.198 3.789 -14.527 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.186 4.186 3 C -0.124 4.124 4 C -0.135 4.135 5 C -0.167 4.167 6 C 0.291 3.709 7 O -0.475 6.475 8 N -0.357 5.357 9 C 0.063 3.937 10 H 0.070 0.930 11 C -0.164 4.164 12 C 0.032 3.968 13 N -0.337 5.337 14 C -0.486 4.486 15 H 0.080 0.920 16 C -0.273 4.273 17 N -0.585 5.585 18 Si 0.942 3.058 19 H -0.222 1.222 20 H -0.201 1.201 21 H -0.198 1.198 22 C -0.008 4.008 23 C 0.043 3.957 24 H 0.092 0.908 25 O -0.376 6.376 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.014 0.986 40 H 0.062 0.938 41 H 0.028 0.972 42 H 0.091 0.909 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.831 2.126 -14.180 21.359 hybrid contribution -1.163 0.813 0.749 1.604 sum -16.995 2.939 -13.431 21.860 Atomic orbital electron populations 1.24016 0.95877 1.02561 1.01007 1.23100 0.96494 0.98958 1.00056 1.20754 0.97900 0.95584 0.98198 1.21221 0.97612 0.96134 0.98577 1.21728 0.97713 1.01059 0.96215 1.21629 0.80888 0.81394 0.87013 1.90694 1.70055 1.37201 1.49557 1.45899 1.39701 1.20194 1.29905 1.20545 0.89087 0.94934 0.89096 0.93004 1.22139 0.94951 1.00098 0.99215 1.20678 0.97359 0.85931 0.92827 1.44286 1.02075 1.11240 1.76065 1.20262 0.85845 0.94605 1.47936 0.91987 1.27348 1.06972 0.96369 0.96645 1.70911 1.25063 1.25694 1.36813 0.82831 0.71064 0.75169 0.76779 1.22214 1.20139 1.19810 1.21704 0.87734 0.96552 0.94857 1.22251 0.84648 0.91690 0.97102 0.90822 1.86449 1.30350 1.30542 1.90270 0.88032 0.87746 0.87782 0.90173 0.89467 0.92906 0.93308 0.86275 0.86038 0.74815 0.92141 0.90893 0.92766 0.98612 0.93792 0.97167 0.90880 0.75357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 14.32 67.79 0.97 -1.77 16 2 C -0.17 -2.61 9.52 25.65 0.24 -2.37 16 3 C -0.09 -1.20 5.66 29.85 0.17 -1.03 16 4 C -0.10 -1.89 4.49 30.59 0.14 -1.76 16 5 C -0.13 -2.18 5.70 29.85 0.17 -2.01 16 6 C 0.50 14.32 7.79 87.66 0.68 15.01 16 7 O -0.59 -23.31 15.64 -3.03 -0.05 -23.36 16 8 N -0.71 -19.09 4.92 -442.40 -2.18 -21.26 16 9 C 0.17 5.97 2.12 45.02 0.10 6.06 16 10 H 0.05 2.22 7.58 -2.38 -0.02 2.20 16 11 C -0.12 -4.87 5.64 30.53 0.17 -4.70 16 12 C 0.16 7.80 4.66 86.22 0.40 8.20 16 13 N -0.61 -30.36 2.85 -699.92 -2.00 -32.36 16 14 C -0.36 -19.44 9.49 84.04 0.80 -18.64 16 15 H 0.06 3.27 7.94 -2.91 -0.02 3.24 16 16 C -0.08 -4.35 4.70 84.86 0.40 -3.95 16 17 N -0.94 -58.15 12.41 21.65 0.27 -57.88 16 18 Si 1.12 49.80 29.99 68.60 2.06 51.86 16 19 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 20 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 C 0.12 4.77 6.14 86.36 0.53 5.30 16 23 C 0.10 3.34 3.14 30.67 0.10 3.43 16 24 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 25 O -0.57 -15.21 13.16 -148.98 -1.96 -17.17 16 26 H 0.10 1.24 8.06 -2.91 -0.02 1.22 16 27 H 0.10 1.23 7.84 -2.91 -0.02 1.21 16 28 H 0.10 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.08 0.90 7.79 -2.39 -0.02 0.88 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.21 8.10 -2.39 -0.02 1.20 16 32 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.42 8.21 8.60 -92.71 -0.80 7.41 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.05 2.98 6.32 -2.39 -0.02 2.97 16 39 H 0.00 -0.22 7.86 -2.38 -0.02 -0.24 16 40 H 0.25 16.06 6.70 -92.70 -0.62 15.44 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 43 H 0.40 6.97 9.08 -74.06 -0.67 6.30 16 Total: -1.00 -74.41 350.60 0.68 -73.73 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.33 Total: 24.66 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.87 Total: 1.78 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -3.90 Total: -111.50 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -2.01 Total: -40.53 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.06 Total: 51.86 kcal Total: -74.41 0.68 -73.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099976607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.647 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds