Wall clock time and date at job start Tue Mar 31 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.51170 * 2 1 4 4 N 1.46506 * 109.47041 * 60.09684 * 3 2 1 5 5 C 1.34770 * 119.99953 * 179.72638 * 4 3 2 6 6 O 1.21282 * 120.00157 * 0.27787 * 5 4 3 7 7 C 1.50700 * 120.00311 * 180.27517 * 5 4 3 8 8 C 1.53778 * 113.61517 * 279.13823 * 7 5 4 9 9 C 1.53948 * 87.02222 * 220.04320 * 8 7 5 10 10 C 1.53775 * 113.61614 * 181.52767 * 7 5 4 11 11 C 1.53297 * 109.55729 * 239.87241 * 2 1 3 12 12 N 1.47147 * 108.38096 * 292.35237 * 11 2 1 13 13 C 1.36939 * 120.98374 * 129.44914 * 12 11 2 14 14 H 1.08003 * 119.99400 * 333.76886 * 13 12 11 15 15 C 1.38806 * 120.00664 * 153.76785 * 13 12 11 16 16 N 1.31618 * 120.00557 * 159.98658 * 15 13 12 17 17 Si 1.86807 * 119.99900 * 339.99029 * 15 13 12 18 18 H 1.48497 * 109.47235 * 91.87592 * 17 15 13 19 19 H 1.48495 * 109.47184 * 211.88115 * 17 15 13 20 20 H 1.48507 * 109.46826 * 331.88011 * 17 15 13 21 21 C 1.47149 * 118.03919 * 309.46066 * 12 11 2 22 22 C 1.53300 * 108.38303 * 50.54028 * 21 12 11 23 23 O 1.42958 * 109.22216 * 307.69834 * 22 21 12 24 24 H 1.09003 * 109.46551 * 60.00561 * 1 2 3 25 25 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47450 * 300.00132 * 1 2 3 27 27 H 1.09005 * 109.46967 * 300.10247 * 3 2 1 28 28 H 1.08999 * 109.47129 * 180.09853 * 3 2 1 29 29 H 0.97000 * 119.99748 * 0.02562 * 4 3 2 30 30 H 1.09002 * 112.84483 * 50.33434 * 7 5 4 31 31 H 1.08997 * 113.61826 * 334.56756 * 8 7 5 32 32 H 1.09008 * 113.61209 * 105.46433 * 8 7 5 33 33 H 1.08997 * 113.54116 * 270.81386 * 9 8 7 34 34 H 1.08997 * 113.67038 * 139.92646 * 9 8 7 35 35 H 1.09001 * 113.61558 * 254.52671 * 10 7 5 36 36 H 1.08997 * 113.61409 * 25.43432 * 10 7 5 37 37 H 1.08992 * 109.68143 * 52.07544 * 11 2 1 38 38 H 1.08997 * 109.67610 * 172.62838 * 11 2 1 39 39 H 0.96990 * 120.00665 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.68648 * 290.82069 * 21 12 11 41 41 H 1.08996 * 109.71441 * 170.27971 * 21 12 11 42 42 H 1.09003 * 109.51445 * 187.77608 * 22 21 12 43 43 H 1.08996 * 109.55281 * 67.64713 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 7 1.5551 2.1325 1.1974 5 6 1.8865 3.4208 1.4137 6 8 2.5828 4.0102 0.6145 7 6 1.3917 4.1291 2.6484 8 6 -0.0535 4.6406 2.5278 9 6 0.4176 5.9056 3.2680 10 6 1.8257 5.6021 2.7292 11 6 2.0432 -0.7250 -1.2494 12 7 1.6981 -2.1507 -1.1331 13 6 1.0640 -2.8081 -2.1534 14 1 0.4437 -2.2589 -2.8463 15 6 1.2183 -4.1800 -2.2971 16 7 0.3407 -4.8718 -2.9924 17 14 2.6716 -5.0447 -1.5034 18 1 2.2861 -5.5203 -0.1505 19 1 3.0748 -6.2038 -2.3394 20 1 3.8093 -4.0970 -1.3894 21 6 2.0543 -2.8493 0.1121 22 6 1.5406 -2.0208 1.2952 23 8 2.0075 -0.6758 1.1659 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6766 1.9568 -0.8891 28 1 3.1310 1.4414 -0.0018 29 1 0.9984 1.6609 1.8367 30 1 1.5812 3.5673 3.5631 31 1 -0.3665 4.8268 1.5005 32 1 -0.7748 4.0476 3.0902 33 1 0.3395 5.8299 4.3525 34 1 -0.0108 6.8276 2.8750 35 1 2.6192 5.7844 3.4539 36 1 2.0275 6.0517 1.7570 37 1 1.5717 -0.3045 -2.1375 38 1 3.1252 -0.6137 -1.3199 39 1 0.4483 -5.8305 -3.0925 40 1 3.1374 -2.9519 0.1787 41 1 1.5906 -3.8356 0.1259 42 1 1.9122 -2.4471 2.2270 43 1 0.4507 -2.0289 1.3003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107677947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:51 Heat of formation + Delta-G solvation = -34.992558 kcal Electronic energy + Delta-G solvation = -23198.953835 eV Core-core repulsion = 19859.769234 eV Total energy + Delta-G solvation = -3339.184601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37892 -39.34240 -37.50523 -35.17911 -34.45023 -32.16595 -31.43505 -28.47558 -27.70145 -26.40194 -25.87860 -25.20631 -23.19116 -21.77548 -20.77488 -19.63308 -19.01142 -17.65766 -16.95649 -16.28881 -15.89309 -15.59811 -15.51261 -14.74255 -14.71693 -14.39133 -14.01144 -13.88301 -13.55682 -13.09910 -12.73940 -12.69260 -12.48729 -12.41374 -12.11343 -11.86040 -11.62646 -11.48821 -11.39486 -11.03043 -10.84486 -10.78975 -10.65065 -10.39988 -10.32156 -9.79364 -9.61920 -9.56676 -9.43287 -8.96848 -8.61409 -7.06372 -6.02833 -3.40195 2.64850 3.23132 3.24932 3.43532 3.46411 4.00707 4.27588 4.36668 4.44902 4.52739 4.56747 4.72188 5.00246 5.14454 5.21199 5.26700 5.31949 5.36189 5.41936 5.53325 5.60790 5.71128 5.71596 5.75322 5.80081 5.85511 5.86934 5.95882 6.05524 6.16889 6.20748 6.21158 6.43419 6.45885 6.51870 6.54524 6.71049 7.57318 7.59537 7.80591 8.22449 8.27634 8.80593 9.61425 9.97318 11.12766 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041070 B = 0.003666 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.602385 B = 7636.171772 C = 7689.674053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.087 3.913 3 C 0.137 3.863 4 N -0.716 5.716 5 C 0.519 3.481 6 O -0.547 6.547 7 C -0.139 4.139 8 C -0.124 4.124 9 C -0.142 4.142 10 C -0.117 4.117 11 C 0.131 3.869 12 N -0.604 5.604 13 C -0.261 4.261 14 H 0.089 0.911 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 0.884 3.116 18 H -0.288 1.288 19 H -0.302 1.302 20 H -0.270 1.270 21 C 0.089 3.911 22 C 0.046 3.954 23 O -0.380 6.380 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.403 0.597 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 15.977 13.572 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C 0.013 3.987 4 N -0.367 5.367 5 C 0.305 3.695 6 O -0.425 6.425 7 C -0.160 4.160 8 C -0.162 4.162 9 C -0.180 4.180 10 C -0.155 4.155 11 C 0.004 3.996 12 N -0.328 5.328 13 C -0.388 4.388 14 H 0.106 0.894 15 C -0.175 4.175 16 N -0.550 5.550 17 Si 0.714 3.286 18 H -0.216 1.216 19 H -0.231 1.231 20 H -0.196 1.196 21 C -0.036 4.036 22 C -0.032 4.032 23 O -0.299 6.299 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.239 0.761 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.176 16.297 13.002 20.849 hybrid contribution 0.419 -1.271 0.517 1.434 sum 0.243 15.027 13.519 20.215 Atomic orbital electron populations 1.22252 0.95062 1.03884 1.01192 1.22235 0.93999 0.90586 0.88619 1.21344 0.99844 0.89651 0.87862 1.45961 1.53366 1.11848 1.25556 1.20493 0.79898 0.81612 0.87507 1.90680 1.38163 1.66199 1.47425 1.22792 0.98682 0.97319 0.97228 1.22853 0.94275 0.97363 1.01704 1.22865 0.96868 0.98075 1.00181 1.22791 0.96849 0.93321 1.02562 1.21462 0.97726 0.85466 0.94933 1.44304 1.69295 1.05723 1.13515 1.18896 1.21794 0.91131 1.07023 0.89389 1.25238 0.97959 0.96473 0.97819 1.69811 1.34345 1.07107 1.43713 0.86975 0.85190 0.78885 0.77523 1.21616 1.23053 1.19552 1.22022 0.98189 0.96784 0.86645 1.23090 0.98977 0.82483 0.98686 1.87840 1.72903 1.26057 1.43139 0.91789 0.90246 0.93330 0.90146 0.90906 0.76147 0.87038 0.89635 0.90662 0.89968 0.91040 0.91131 0.88730 0.90816 0.94861 0.92641 0.94837 0.90098 0.89712 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 7.92 37.16 0.29 -2.21 16 2 C 0.09 1.39 0.76 -90.46 -0.07 1.32 16 3 C 0.14 1.98 4.82 -4.04 -0.02 1.96 16 4 N -0.72 -8.99 5.15 -60.29 -0.31 -9.30 16 5 C 0.52 6.77 7.35 -10.99 -0.08 6.69 16 6 O -0.55 -9.20 15.91 5.56 0.09 -9.11 16 7 C -0.14 -1.30 4.14 -90.96 -0.38 -1.68 16 8 C -0.12 -0.97 7.64 -25.83 -0.20 -1.17 16 9 C -0.14 -0.99 8.09 -25.83 -0.21 -1.20 16 10 C -0.12 -1.05 7.40 -25.92 -0.19 -1.25 16 11 C 0.13 2.53 5.41 -3.54 -0.02 2.51 16 12 N -0.60 -13.88 2.36 -171.84 -0.40 -14.29 16 13 C -0.26 -7.04 10.10 -15.06 -0.15 -7.19 16 14 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 15 C 0.02 0.68 5.26 -17.43 -0.09 0.59 16 16 N -0.91 -27.21 13.97 55.49 0.78 -26.43 16 17 Si 0.88 22.01 24.29 -169.99 -4.13 17.89 16 18 H -0.29 -6.85 6.58 56.52 0.37 -6.47 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.27 -6.72 6.55 56.52 0.37 -6.35 16 21 C 0.09 1.89 4.38 -3.53 -0.02 1.88 16 22 C 0.05 0.78 6.60 37.31 0.25 1.03 16 23 O -0.38 -6.41 9.97 -35.23 -0.35 -6.76 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 1.40 6.12 -51.93 -0.32 1.09 16 26 H 0.05 0.61 6.87 -51.93 -0.36 0.25 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.40 4.44 7.20 -40.82 -0.29 4.15 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.01 7.45 -51.93 -0.39 0.63 16 37 H 0.07 1.39 7.95 -51.93 -0.41 0.97 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.03 0.73 6.87 -51.93 -0.36 0.37 16 41 H 0.08 1.84 4.61 -51.93 -0.24 1.60 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 0.95 6.26 -51.93 -0.32 0.62 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -31.62 330.95 -7.18 -38.81 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.96 Total: 2.93 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.88 Total: 1.29 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.06 Total: -50.02 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.26 Total: -15.87 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.13 Total: 17.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.62 -7.18 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107677947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.814 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds