Wall clock time and date at job start Tue Mar 31 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.51170 * 2 1 4 4 N 1.46506 * 109.47041 * 60.09684 * 3 2 1 5 5 C 1.34770 * 119.99953 * 179.72638 * 4 3 2 6 6 O 1.21282 * 120.00157 * 0.27787 * 5 4 3 7 7 C 1.50700 * 120.00311 * 180.27517 * 5 4 3 8 8 C 1.53778 * 113.61517 * 279.13823 * 7 5 4 9 9 C 1.53948 * 87.02222 * 220.04320 * 8 7 5 10 10 C 1.53775 * 113.61614 * 181.52767 * 7 5 4 11 11 C 1.53297 * 109.55729 * 239.87241 * 2 1 3 12 12 N 1.47147 * 108.38096 * 292.35237 * 11 2 1 13 13 C 1.36939 * 120.98374 * 129.44914 * 12 11 2 14 14 H 1.08003 * 119.99400 * 333.76886 * 13 12 11 15 15 C 1.38806 * 120.00664 * 153.76785 * 13 12 11 16 16 N 1.31618 * 120.00557 * 159.98658 * 15 13 12 17 17 Si 1.86807 * 119.99900 * 339.99029 * 15 13 12 18 18 H 1.48497 * 109.47235 * 91.87592 * 17 15 13 19 19 H 1.48495 * 109.47184 * 211.88115 * 17 15 13 20 20 H 1.48507 * 109.46826 * 331.88011 * 17 15 13 21 21 C 1.47149 * 118.03919 * 309.46066 * 12 11 2 22 22 C 1.53300 * 108.38303 * 50.54028 * 21 12 11 23 23 O 1.42958 * 109.22216 * 307.69834 * 22 21 12 24 24 H 1.09003 * 109.46551 * 60.00561 * 1 2 3 25 25 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47450 * 300.00132 * 1 2 3 27 27 H 1.09005 * 109.46967 * 300.10247 * 3 2 1 28 28 H 1.08999 * 109.47129 * 180.09853 * 3 2 1 29 29 H 0.97000 * 119.99748 * 0.02562 * 4 3 2 30 30 H 1.09002 * 112.84483 * 50.33434 * 7 5 4 31 31 H 1.08997 * 113.61826 * 334.56756 * 8 7 5 32 32 H 1.09008 * 113.61209 * 105.46433 * 8 7 5 33 33 H 1.08997 * 113.54116 * 270.81386 * 9 8 7 34 34 H 1.08997 * 113.67038 * 139.92646 * 9 8 7 35 35 H 1.09001 * 113.61558 * 254.52671 * 10 7 5 36 36 H 1.08997 * 113.61409 * 25.43432 * 10 7 5 37 37 H 1.08992 * 109.68143 * 52.07544 * 11 2 1 38 38 H 1.08997 * 109.67610 * 172.62838 * 11 2 1 39 39 H 0.96990 * 120.00665 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.68648 * 290.82069 * 21 12 11 41 41 H 1.08996 * 109.71441 * 170.27971 * 21 12 11 42 42 H 1.09003 * 109.51445 * 187.77608 * 22 21 12 43 43 H 1.08996 * 109.55281 * 67.64713 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 7 1.5551 2.1325 1.1974 5 6 1.8865 3.4208 1.4137 6 8 2.5828 4.0102 0.6145 7 6 1.3917 4.1291 2.6484 8 6 -0.0535 4.6406 2.5278 9 6 0.4176 5.9056 3.2680 10 6 1.8257 5.6021 2.7292 11 6 2.0432 -0.7250 -1.2494 12 7 1.6981 -2.1507 -1.1331 13 6 1.0640 -2.8081 -2.1534 14 1 0.4437 -2.2589 -2.8463 15 6 1.2183 -4.1800 -2.2971 16 7 0.3407 -4.8718 -2.9924 17 14 2.6716 -5.0447 -1.5034 18 1 2.2861 -5.5203 -0.1505 19 1 3.0748 -6.2038 -2.3394 20 1 3.8093 -4.0970 -1.3894 21 6 2.0543 -2.8493 0.1121 22 6 1.5406 -2.0208 1.2952 23 8 2.0075 -0.6758 1.1659 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6766 1.9568 -0.8891 28 1 3.1310 1.4414 -0.0018 29 1 0.9984 1.6609 1.8367 30 1 1.5812 3.5673 3.5631 31 1 -0.3665 4.8268 1.5005 32 1 -0.7748 4.0476 3.0902 33 1 0.3395 5.8299 4.3525 34 1 -0.0108 6.8276 2.8750 35 1 2.6192 5.7844 3.4539 36 1 2.0275 6.0517 1.7570 37 1 1.5717 -0.3045 -2.1375 38 1 3.1252 -0.6137 -1.3199 39 1 0.4483 -5.8305 -3.0925 40 1 3.1374 -2.9519 0.1787 41 1 1.5906 -3.8356 0.1259 42 1 1.9122 -2.4471 2.2270 43 1 0.4507 -2.0289 1.3003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107677947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:50 Heat of formation + Delta-G solvation = -57.259413 kcal Electronic energy + Delta-G solvation = -23199.919399 eV Core-core repulsion = 19859.769234 eV Total energy + Delta-G solvation = -3340.150164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41725 -40.63773 -38.37500 -36.74506 -35.86356 -33.77372 -33.18117 -29.99092 -28.69830 -28.03263 -26.57092 -26.29801 -24.82721 -23.34385 -21.80010 -20.68664 -20.15951 -19.00270 -18.52190 -17.58372 -17.35444 -16.89988 -16.45447 -16.08707 -15.94158 -15.78783 -15.54984 -15.44288 -14.93334 -14.28634 -14.16723 -13.83064 -13.72951 -13.50845 -13.36177 -13.30510 -12.97101 -12.86628 -12.61225 -12.36104 -12.17758 -12.10608 -12.08734 -11.57334 -11.39988 -11.30181 -11.25277 -11.08054 -10.70842 -10.48362 -10.07802 -8.96786 -8.20017 -5.53292 1.25293 1.39745 1.47530 1.64959 2.20446 2.37035 2.66888 3.00053 3.20235 3.58114 3.70579 3.77558 3.83915 3.90831 3.95721 3.96819 4.24114 4.27137 4.28897 4.45076 4.53815 4.65154 4.66344 4.73794 4.75847 4.83311 4.83888 4.90488 4.93089 5.00548 5.03949 5.07206 5.12625 5.22444 5.35691 5.41079 5.57026 5.76990 6.07514 6.21703 6.59289 6.80599 7.27796 7.53167 7.93683 8.99398 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041070 B = 0.003666 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.602385 B = 7636.171772 C = 7689.674053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 C 0.145 3.855 4 N -0.707 5.707 5 C 0.515 3.485 6 O -0.590 6.590 7 C -0.136 4.136 8 C -0.121 4.121 9 C -0.130 4.130 10 C -0.126 4.126 11 C 0.124 3.876 12 N -0.616 5.616 13 C -0.245 4.245 14 H 0.058 0.942 15 C -0.032 4.032 16 N -0.954 5.954 17 Si 0.944 3.056 18 H -0.267 1.267 19 H -0.312 1.312 20 H -0.270 1.270 21 C 0.081 3.919 22 C 0.054 3.946 23 O -0.377 6.377 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.414 0.586 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.032 0.968 41 H 0.065 0.935 42 H 0.120 0.880 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 17.072 16.710 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C 0.021 3.979 4 N -0.359 5.359 5 C 0.304 3.696 6 O -0.471 6.471 7 C -0.157 4.157 8 C -0.159 4.159 9 C -0.168 4.168 10 C -0.164 4.164 11 C -0.002 4.002 12 N -0.341 5.341 13 C -0.375 4.375 14 H 0.076 0.924 15 C -0.227 4.227 16 N -0.600 5.600 17 Si 0.774 3.226 18 H -0.194 1.194 19 H -0.241 1.241 20 H -0.195 1.195 21 C -0.044 4.044 22 C -0.023 4.023 23 O -0.296 6.296 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.251 0.749 30 H 0.154 0.846 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.184 17.417 16.198 23.786 hybrid contribution 0.418 -1.514 -0.509 1.651 sum 0.234 15.903 15.689 22.341 Atomic orbital electron populations 1.22176 0.94018 1.02646 1.02842 1.22047 0.94589 0.90817 0.86756 1.21109 0.99098 0.88748 0.88987 1.45871 1.53204 1.11817 1.25002 1.21212 0.78933 0.81353 0.88137 1.90665 1.40172 1.67074 1.49193 1.22941 0.99678 0.97065 0.96039 1.22863 0.93583 0.97940 1.01484 1.22853 0.94817 0.97870 1.01224 1.22810 0.98634 0.93225 1.01740 1.21639 0.97761 0.83874 0.96934 1.44379 1.69249 1.07005 1.13491 1.18824 1.20503 0.91069 1.07066 0.92410 1.25818 1.00141 0.97360 0.99339 1.69932 1.36251 1.07316 1.46531 0.85984 0.81835 0.77332 0.77480 1.19377 1.24121 1.19453 1.22128 0.97990 0.96878 0.87405 1.23058 0.99330 0.81887 0.98066 1.87859 1.73025 1.25811 1.42881 0.91660 0.92801 0.90246 0.90051 0.92105 0.74872 0.84600 0.90973 0.88592 0.87926 0.90658 0.90340 0.91198 0.91121 0.94997 0.92834 0.95007 0.91691 0.86250 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 7.92 71.98 0.57 -3.91 16 2 C 0.10 3.00 0.76 -10.69 -0.01 2.99 16 3 C 0.15 3.99 4.82 86.38 0.42 4.40 16 4 N -0.71 -16.06 5.15 -463.04 -2.39 -18.45 16 5 C 0.52 12.60 7.35 87.66 0.64 13.25 16 6 O -0.59 -19.66 15.91 -3.04 -0.05 -19.71 16 7 C -0.14 -2.18 4.14 -11.02 -0.05 -2.22 16 8 C -0.12 -1.52 7.64 31.18 0.24 -1.29 16 9 C -0.13 -1.42 8.09 31.18 0.25 -1.17 16 10 C -0.13 -2.04 7.40 31.12 0.23 -1.81 16 11 C 0.12 4.72 5.41 86.36 0.47 5.19 16 12 N -0.62 -28.14 2.36 -697.57 -1.64 -29.78 16 13 C -0.25 -13.52 10.10 84.03 0.85 -12.67 16 14 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 15 C -0.03 -1.80 5.26 84.86 0.45 -1.36 16 16 N -0.95 -58.81 13.97 21.65 0.30 -58.51 16 17 Si 0.94 45.84 24.29 68.60 1.67 47.51 16 18 H -0.27 -11.95 6.58 99.48 0.65 -11.30 16 19 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 20 H -0.27 -12.87 6.55 99.48 0.65 -12.22 16 21 C 0.08 3.29 4.38 86.36 0.38 3.67 16 22 C 0.05 1.69 6.60 72.08 0.48 2.17 16 23 O -0.38 -11.58 9.97 -148.98 -1.49 -13.06 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.82 6.12 -2.39 -0.01 1.81 16 26 H 0.08 1.73 6.87 -2.39 -0.02 1.71 16 27 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.41 7.63 7.20 -92.71 -0.67 6.97 16 30 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 32 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.48 7.45 -2.39 -0.02 1.47 16 37 H 0.07 2.69 7.95 -2.39 -0.02 2.67 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.26 15.41 8.31 -92.72 -0.77 14.64 16 40 H 0.03 1.32 6.87 -2.38 -0.02 1.30 16 41 H 0.07 2.86 4.61 -2.39 -0.01 2.85 16 42 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.06 1.89 6.26 -2.39 -0.01 1.87 16 Total: -1.00 -69.91 330.95 1.55 -68.36 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.23 Total: 16.41 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 4.91 Total: 7.24 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.73 Total: -106.74 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.53 Total: -32.77 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -69.91 1.55 -68.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107677947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.103 kcal (2) G-P(sol) polarization free energy of solvation -69.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds