Wall clock time and date at job start Tue Mar 31 2020 02:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50698 * 119.99880 * 2 1 4 4 C 1.32995 * 120.00080 * 179.72427 * 2 1 3 5 5 C 1.47100 * 119.99794 * 187.85307 * 4 2 1 6 6 O 1.21613 * 120.00006 * 5.54421 * 5 4 2 7 7 N 1.34784 * 119.99881 * 185.53821 * 5 4 2 8 8 C 1.46496 * 120.00058 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46961 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.51170 * 304.99494 * 9 8 7 11 11 C 1.53299 * 109.50961 * 184.89837 * 9 8 7 12 12 N 1.47147 * 108.38286 * 187.77371 * 11 9 8 13 13 C 1.36941 * 120.98161 * 230.50956 * 12 11 9 14 14 H 1.08001 * 120.00129 * 147.75368 * 13 12 11 15 15 C 1.38810 * 119.99880 * 327.75975 * 13 12 11 16 16 N 1.31616 * 120.00270 * 349.27477 * 15 13 12 17 17 Si 1.86799 * 119.99925 * 169.27757 * 15 13 12 18 18 H 1.48502 * 109.47244 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47253 * 119.99649 * 17 15 13 20 20 H 1.48499 * 109.47486 * 239.99823 * 17 15 13 21 21 C 1.47152 * 118.03920 * 50.53213 * 12 11 9 22 22 C 1.53295 * 108.38222 * 309.46543 * 21 12 11 23 23 O 1.42953 * 109.51506 * 65.09872 * 9 8 7 24 24 H 1.09001 * 109.47545 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47421 * 120.00127 * 1 2 3 26 26 H 1.09001 * 109.46750 * 239.99905 * 1 2 3 27 27 H 1.09003 * 109.47238 * 355.15617 * 3 2 1 28 28 H 1.09002 * 109.47435 * 115.15561 * 3 2 1 29 29 H 1.09000 * 109.47292 * 235.15946 * 3 2 1 30 30 H 1.07998 * 120.00039 * 7.86353 * 4 2 1 31 31 H 0.96996 * 119.99588 * 359.97438 * 7 5 4 32 32 H 1.09005 * 109.46957 * 300.00113 * 8 7 5 33 33 H 1.08997 * 109.47495 * 59.99736 * 8 7 5 34 34 H 1.08995 * 109.46940 * 60.00220 * 10 9 8 35 35 H 1.09001 * 109.47290 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47513 * 300.00308 * 10 9 8 37 37 H 1.09004 * 109.68010 * 307.49720 * 11 9 8 38 38 H 1.09000 * 109.68226 * 68.00847 * 11 9 8 39 39 H 0.97001 * 120.00060 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.67948 * 69.19052 * 21 12 11 41 41 H 1.08994 * 109.68254 * 189.74397 * 21 12 11 42 42 H 1.09001 * 109.51072 * 172.22272 * 22 21 12 43 43 H 1.08989 * 109.51351 * 292.32490 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0055 5 6 3.6327 -1.1568 0.1796 6 8 4.2201 -0.1192 0.4190 7 7 4.3199 -2.3114 0.0740 8 6 5.7745 -2.3166 0.2479 9 6 6.3033 -3.7423 0.0783 10 6 5.5708 -4.6771 1.0430 11 6 7.8060 -3.7702 0.3802 12 7 8.3248 -5.1021 0.0306 13 6 9.0828 -5.8185 0.9180 14 1 9.0305 -6.8972 0.9252 15 6 9.9184 -5.1583 1.8083 16 7 10.1457 -3.8698 1.6656 17 14 10.7204 -6.0986 3.2091 18 1 10.3073 -7.5237 3.1491 19 1 12.1975 -6.0063 3.0855 20 1 10.2948 -5.5134 4.5058 21 6 8.0056 -5.6412 -1.3008 22 6 6.4932 -5.5221 -1.5207 23 8 6.0841 -4.1762 -1.2660 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3634 -0.5138 -0.8899 26 1 -0.3633 -0.5139 0.8900 27 1 1.5553 2.1318 -0.0868 28 1 2.8205 1.4014 0.9302 29 1 2.9506 1.3262 -0.8434 30 1 1.6396 -2.0833 -0.1179 31 1 3.8512 -3.1390 -0.1165 32 1 6.2321 -1.6684 -0.4995 33 1 6.0226 -1.9529 1.2450 34 1 4.5027 -4.6580 0.8266 35 1 5.9483 -5.6924 0.9220 36 1 5.7399 -4.3467 2.0679 37 1 8.3140 -3.0107 -0.2141 38 1 7.9711 -3.5779 1.4403 39 1 10.7300 -3.4085 2.2876 40 1 8.5338 -5.0701 -2.0644 41 1 8.3029 -6.6885 -1.3537 42 1 6.2530 -5.7869 -2.5504 43 1 5.9722 -6.1958 -0.8406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107710038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:50 Heat of formation + Delta-G solvation = -46.530374 kcal Electronic energy + Delta-G solvation = -23034.192269 eV Core-core repulsion = 19694.507351 eV Total energy + Delta-G solvation = -3339.684918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80164 -38.81799 -35.75238 -34.68591 -34.25704 -31.73383 -31.26029 -28.41842 -27.93824 -27.77913 -26.30997 -25.24014 -23.21980 -21.60015 -20.64415 -19.06169 -18.42049 -17.00347 -16.86124 -15.84098 -15.36379 -15.18438 -14.79992 -14.41703 -14.22228 -14.06975 -13.84594 -13.74668 -13.45072 -13.05101 -12.77427 -12.67754 -12.40899 -12.26517 -11.88330 -11.77462 -11.62350 -11.57843 -11.17774 -10.98874 -10.84107 -10.66413 -10.29914 -10.23986 -10.03154 -9.57230 -9.45560 -9.19067 -8.97757 -8.63332 -8.56461 -6.65795 -5.85112 -3.35712 1.37100 3.32148 3.39976 3.41825 3.46838 3.51513 4.27660 4.42564 4.68816 4.74763 5.13158 5.17953 5.28477 5.34067 5.36840 5.49964 5.53407 5.58195 5.63991 5.69385 5.82790 5.92727 5.95450 6.03894 6.06222 6.12806 6.16259 6.33429 6.41378 6.46568 6.50765 6.62200 6.74243 6.80061 6.84247 7.07305 7.47463 7.71594 7.81629 7.90333 8.36731 8.50250 9.11475 9.72253 10.32922 11.22638 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.003851 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.729760 B = 7269.730186 C = 7781.169216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.039 4.039 3 C -0.117 4.117 4 C -0.233 4.233 5 C 0.540 3.460 6 O -0.548 6.548 7 N -0.715 5.715 8 C 0.140 3.860 9 C 0.077 3.923 10 C -0.161 4.161 11 C 0.163 3.837 12 N -0.590 5.590 13 C -0.257 4.257 14 H 0.066 0.934 15 C 0.008 3.992 16 N -0.901 5.901 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.091 0.909 39 H 0.256 0.744 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.283 3.143 -3.629 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.173 4.173 4 C -0.254 4.254 5 C 0.329 3.671 6 O -0.429 6.429 7 N -0.366 5.366 8 C 0.016 3.984 9 C 0.036 3.964 10 C -0.219 4.219 11 C 0.037 3.963 12 N -0.314 5.314 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.192 4.192 16 N -0.544 5.544 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.215 1.215 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.303 6.303 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.141 0.859 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.782 4.067 -3.488 17.617 hybrid contribution 0.453 -1.192 0.766 1.488 sum -16.329 2.875 -2.722 16.802 Atomic orbital electron populations 1.21011 0.91323 1.03161 1.02721 1.22526 0.95713 0.95545 0.90347 1.21068 0.99126 0.92568 1.04587 1.22379 0.93682 0.98852 1.10460 1.18534 0.87713 0.83545 0.77307 1.90762 1.71141 1.31631 1.49320 1.45945 1.08558 1.10157 1.71961 1.21311 0.78954 0.95917 1.02186 1.22558 0.99311 0.91900 0.82596 1.22197 0.98184 1.01772 0.99712 1.21234 0.85763 0.87400 1.01945 1.43935 1.59399 1.17545 1.10531 1.19152 1.17139 0.90337 1.12009 0.91672 1.25225 0.96964 0.96185 1.00776 1.69976 1.38774 1.08335 1.37334 0.86202 0.79055 0.79321 0.82054 1.20202 1.21540 1.21458 1.21611 0.92813 0.98255 0.89031 1.23033 0.96923 0.83748 0.99523 1.87824 1.84268 1.29611 1.28633 0.91309 0.90801 0.90662 0.93119 0.89294 0.90515 0.85895 0.76429 0.90956 0.90144 0.93969 0.90871 0.91903 0.95175 0.89096 0.93433 0.95671 0.92068 0.90247 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 10.07 36.01 0.36 -0.53 16 2 C -0.04 -0.41 6.11 -101.17 -0.62 -1.03 16 3 C -0.12 -1.34 8.35 36.00 0.30 -1.04 16 4 C -0.23 -2.72 9.67 -37.81 -0.37 -3.09 16 5 C 0.54 8.26 7.69 -12.66 -0.10 8.17 16 6 O -0.55 -10.02 13.24 5.27 0.07 -9.95 16 7 N -0.72 -10.74 5.19 -61.49 -0.32 -11.06 16 8 C 0.14 2.47 4.85 -4.04 -0.02 2.46 16 9 C 0.08 1.46 0.78 -90.47 -0.07 1.39 16 10 C -0.16 -2.77 7.86 37.16 0.29 -2.48 16 11 C 0.16 3.83 4.04 -3.53 -0.01 3.82 16 12 N -0.59 -14.47 2.55 -171.83 -0.44 -14.91 16 13 C -0.26 -6.85 9.61 -15.06 -0.14 -6.99 16 14 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 15 C 0.01 0.22 5.05 -17.43 -0.09 0.13 16 16 N -0.90 -25.74 11.22 55.49 0.62 -25.12 16 17 Si 0.90 21.28 29.57 -169.99 -5.03 16.25 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.11 2.27 6.74 -3.53 -0.02 2.24 16 22 C 0.05 0.80 6.60 37.31 0.25 1.04 16 23 O -0.38 -7.21 10.17 -35.23 -0.36 -7.57 16 24 H 0.07 0.42 7.71 -51.93 -0.40 0.01 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.45 7.71 -51.93 -0.40 0.05 16 28 H 0.09 1.18 6.94 -51.93 -0.36 0.82 16 29 H 0.08 0.99 7.57 -51.93 -0.39 0.60 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.40 5.28 6.97 -40.82 -0.28 5.00 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.04 0.60 6.58 -51.93 -0.34 0.26 16 35 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 2.35 6.41 -51.93 -0.33 2.02 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.80 6.26 -51.94 -0.33 0.47 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -30.70 340.23 -7.48 -38.19 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.92 Total: 4.95 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.24 Total: 4.09 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.13 Total: -51.08 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.29 Total: -17.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.70 -7.48 -38.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107710038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.345 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds