Wall clock time and date at job start Tue Mar 31 2020 02:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50708 * 120.00166 * 2 1 4 4 C 1.32992 * 120.00409 * 180.02562 * 2 1 3 5 5 C 1.47111 * 119.99327 * 352.81995 * 4 2 1 6 6 O 1.21610 * 120.00169 * 353.32725 * 5 4 2 7 7 N 1.34779 * 119.99554 * 173.33056 * 5 4 2 8 8 C 1.46499 * 119.99856 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47157 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.51029 * 60.09793 * 9 8 7 11 11 C 1.53292 * 109.51469 * 180.24830 * 9 8 7 12 12 N 1.47223 * 108.40800 * 172.23031 * 11 9 8 13 13 C 1.36941 * 121.03308 * 129.46646 * 12 11 9 14 14 H 1.07996 * 119.99784 * 205.79665 * 13 12 11 15 15 C 1.38806 * 119.99779 * 25.79052 * 13 12 11 16 16 N 1.31621 * 120.00489 * 15.39659 * 15 13 12 17 17 Si 1.86804 * 119.99940 * 195.39258 * 15 13 12 18 18 H 1.48495 * 109.47004 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46944 * 120.00083 * 17 15 13 20 20 H 1.48503 * 109.47126 * 240.00179 * 17 15 13 21 21 C 1.47157 * 117.98651 * 309.49023 * 12 11 9 22 22 C 1.53291 * 108.41663 * 50.51504 * 21 12 11 23 23 O 1.42952 * 109.51372 * 299.99780 * 9 8 7 24 24 H 1.09003 * 109.46760 * 264.29455 * 1 2 3 25 25 H 1.08999 * 109.46931 * 24.29234 * 1 2 3 26 26 H 1.08995 * 109.46925 * 144.29389 * 1 2 3 27 27 H 1.08997 * 109.46987 * 270.00315 * 3 2 1 28 28 H 1.09006 * 109.46357 * 30.00409 * 3 2 1 29 29 H 1.08991 * 109.47041 * 150.00044 * 3 2 1 30 30 H 1.07994 * 120.00473 * 172.82122 * 4 2 1 31 31 H 0.97002 * 120.00377 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47484 * 59.99424 * 8 7 5 33 33 H 1.09005 * 109.46692 * 299.99444 * 8 7 5 34 34 H 1.08998 * 109.47487 * 299.89790 * 10 9 8 35 35 H 1.09001 * 109.47192 * 59.90209 * 10 9 8 36 36 H 1.09002 * 109.47110 * 179.89586 * 10 9 8 37 37 H 1.09005 * 109.68591 * 291.95363 * 11 9 8 38 38 H 1.09000 * 109.67878 * 52.50430 * 11 9 8 39 39 H 0.97000 * 120.00591 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.67928 * 290.77284 * 21 12 11 41 41 H 1.09001 * 109.68221 * 170.26270 * 21 12 11 42 42 H 1.09000 * 109.51106 * 67.60536 * 22 21 12 43 43 H 1.08999 * 109.51334 * 187.70439 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4451 -2.4208 0.1582 6 8 0.2555 -2.4127 0.4108 7 7 2.0975 -3.5924 0.0236 8 6 1.3735 -4.8562 0.1811 9 6 2.3392 -6.0257 -0.0205 10 6 3.4586 -5.9491 1.0196 11 6 1.5813 -7.3487 0.1379 12 7 2.4822 -8.4491 -0.2430 13 6 2.6606 -9.5314 0.5767 14 1 3.5760 -10.1022 0.5258 15 6 1.6650 -9.8946 1.4731 16 7 0.4490 -9.4095 1.3383 17 14 2.0510 -11.0722 2.8709 18 1 3.4800 -11.4702 2.8025 19 1 1.7858 -10.4028 4.1696 20 1 1.1942 -12.2793 2.7521 21 6 3.1860 -8.3506 -1.5317 22 6 3.8657 -6.9788 -1.6087 23 8 2.9017 -5.9597 -1.3330 24 1 -0.3633 -0.1022 1.0226 25 1 -0.3633 0.9367 -0.4228 26 1 -0.3633 -0.8345 -0.5998 27 1 2.4422 1.6198 -1.0276 28 1 1.6714 2.0647 0.5139 29 1 3.2129 1.1748 0.5138 30 1 3.2456 -1.1553 -0.1174 31 1 3.0463 -3.5989 -0.1782 32 1 0.5756 -4.9126 -0.5593 33 1 0.9448 -4.9070 1.1820 34 1 3.9992 -5.0098 0.9032 35 1 3.0291 -5.9996 2.0202 36 1 4.1452 -6.7836 0.8766 37 1 1.2702 -7.4717 1.1754 38 1 0.7056 -7.3500 -0.5110 39 1 -0.2469 -9.6636 1.9645 40 1 2.4717 -8.4529 -2.3487 41 1 3.9375 -9.1372 -1.6005 42 1 4.6688 -6.9287 -0.8735 43 1 4.2767 -6.8318 -2.6075 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107710039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:52 Heat of formation + Delta-G solvation = -44.089189 kcal Electronic energy + Delta-G solvation = -23059.257001 eV Core-core repulsion = 19719.677941 eV Total energy + Delta-G solvation = -3339.579060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.80866 -38.83127 -35.73757 -34.68998 -34.26145 -31.76591 -31.24814 -28.40410 -27.93564 -27.78640 -26.29012 -25.24302 -23.22080 -21.58586 -20.65971 -19.07412 -18.40902 -17.02131 -16.86313 -15.86147 -15.32058 -15.24382 -14.79493 -14.41376 -14.18547 -14.07372 -13.85698 -13.70929 -13.47565 -13.05282 -12.79856 -12.60122 -12.44847 -12.32304 -11.94160 -11.67639 -11.62548 -11.55507 -11.18587 -11.00622 -10.83433 -10.64574 -10.29756 -10.22684 -9.97362 -9.58456 -9.41081 -9.21165 -9.01655 -8.62015 -8.54837 -6.74588 -5.84201 -3.28307 1.38231 3.32940 3.40909 3.42822 3.45639 3.52242 4.27284 4.43237 4.71686 4.75528 5.15631 5.17693 5.27254 5.34010 5.36153 5.49927 5.53132 5.57774 5.62556 5.70537 5.81331 5.92405 5.94885 6.04196 6.07040 6.13631 6.15504 6.33092 6.43071 6.47878 6.53657 6.61387 6.73528 6.80805 6.83157 7.09412 7.49457 7.69946 7.82545 7.90036 8.32789 8.50493 9.10736 9.73612 10.30485 11.23464 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.003885 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.156548 B = 7205.931635 C = 7729.003624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.040 4.040 3 C -0.125 4.125 4 C -0.231 4.231 5 C 0.539 3.461 6 O -0.547 6.547 7 N -0.714 5.714 8 C 0.141 3.859 9 C 0.078 3.922 10 C -0.161 4.161 11 C 0.159 3.841 12 N -0.592 5.592 13 C -0.252 4.252 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.290 1.290 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.029 0.971 39 H 0.255 0.745 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 16.576 -3.013 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.042 4.042 3 C -0.182 4.182 4 C -0.251 4.251 5 C 0.328 3.672 6 O -0.428 6.428 7 N -0.365 5.365 8 C 0.017 3.983 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.032 3.968 12 N -0.315 5.315 13 C -0.381 4.381 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.733 3.267 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.216 1.216 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.304 6.304 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.118 16.609 -2.856 17.613 hybrid contribution 0.786 -0.980 0.749 1.462 sum 5.904 15.629 -2.107 16.840 Atomic orbital electron populations 1.21129 0.90919 1.02230 1.03653 1.22520 0.96904 0.94339 0.90458 1.20986 1.00022 0.94500 1.02698 1.22414 1.00164 0.92266 1.10305 1.18539 0.86944 0.84283 0.77394 1.90751 1.15236 1.87722 1.49063 1.45895 1.13364 1.05587 1.71627 1.21323 0.94256 0.80589 1.02161 1.22558 0.93793 0.97041 0.82916 1.22198 0.99380 1.00966 0.99321 1.21343 0.90353 0.82340 1.02757 1.44037 1.51741 1.19523 1.16243 1.19213 0.99112 1.05721 1.14077 0.91350 1.25043 0.94626 0.98951 1.01038 1.70001 1.00477 1.47081 1.37161 0.86202 0.77742 0.80427 0.82280 1.20280 1.21478 1.21644 1.21594 0.95754 0.94800 0.89588 1.23029 0.91083 0.89602 0.99492 1.87813 1.58635 1.51882 1.32060 0.90372 0.92955 0.89203 0.90613 0.91020 0.91213 0.85878 0.76399 0.91002 0.90178 0.93938 0.91921 0.90893 0.88233 0.95340 0.93473 0.95674 0.92082 0.93411 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.46 36.01 0.30 -1.11 16 2 C -0.04 -0.43 6.11 -101.16 -0.62 -1.04 16 3 C -0.13 -0.89 10.01 36.01 0.36 -0.53 16 4 C -0.23 -2.71 9.62 -37.80 -0.36 -3.07 16 5 C 0.54 8.27 7.60 -12.66 -0.10 8.17 16 6 O -0.55 -10.02 13.30 5.27 0.07 -9.95 16 7 N -0.71 -10.75 5.15 -61.49 -0.32 -11.07 16 8 C 0.14 2.49 4.82 -4.04 -0.02 2.47 16 9 C 0.08 1.47 0.76 -90.47 -0.07 1.40 16 10 C -0.16 -2.80 7.92 37.16 0.29 -2.50 16 11 C 0.16 3.73 4.12 -3.50 -0.01 3.72 16 12 N -0.59 -14.48 2.58 -171.77 -0.44 -14.92 16 13 C -0.25 -6.71 9.67 -15.06 -0.15 -6.85 16 14 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 15 C 0.00 0.05 4.99 -17.43 -0.09 -0.03 16 16 N -0.90 -25.75 11.01 55.49 0.61 -25.13 16 17 Si 0.90 21.30 29.58 -169.99 -5.03 16.27 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 C 0.11 2.25 6.73 -3.53 -0.02 2.22 16 22 C 0.05 0.80 6.60 37.31 0.25 1.04 16 23 O -0.38 -7.17 9.97 -35.23 -0.35 -7.52 16 24 H 0.08 0.95 8.03 -51.93 -0.42 0.54 16 25 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.09 1.26 6.17 -51.93 -0.32 0.94 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.40 5.32 7.19 -40.82 -0.29 5.03 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.04 0.62 6.87 -51.93 -0.36 0.26 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.37 6.12 -51.93 -0.32 1.06 16 37 H 0.10 2.59 6.05 -51.93 -0.31 2.27 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 42 H 0.05 0.80 6.25 -51.93 -0.32 0.48 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -30.61 340.47 -7.51 -38.11 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.95 Total: 5.20 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.23 Total: 3.88 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.15 Total: -51.12 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.28 Total: -17.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.61 -7.51 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107710039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.976 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds