Wall clock time and date at job start Tue Mar 31 2020 01:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 120.00122 * 2 1 4 4 C 1.52999 * 109.46937 * 125.00017 * 3 2 1 5 5 C 1.50708 * 109.46856 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00004 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99865 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00181 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47496 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.51185 * 60.09828 * 9 8 7 11 11 C 1.53292 * 109.51189 * 180.25345 * 9 8 7 12 12 N 1.47233 * 108.40299 * 172.22959 * 11 9 8 13 13 C 1.36938 * 121.03150 * 129.45891 * 12 11 9 14 14 H 1.07995 * 120.00241 * 206.17702 * 13 12 11 15 15 C 1.38816 * 119.99718 * 26.17954 * 13 12 11 16 16 N 1.31615 * 120.00526 * 16.89599 * 15 13 12 17 17 Si 1.86806 * 119.99896 * 196.89669 * 15 13 12 18 18 H 1.48504 * 109.46919 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47372 * 119.99555 * 17 15 13 20 20 H 1.48500 * 109.47051 * 240.00016 * 17 15 13 21 21 C 1.47151 * 117.98790 * 309.48233 * 12 11 9 22 22 C 1.53300 * 108.41429 * 50.51917 * 21 12 11 23 23 O 1.42962 * 109.22183 * 307.68047 * 22 21 12 24 24 H 1.07997 * 120.00026 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00395 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00384 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46790 * 5.00345 * 3 2 1 28 28 H 1.08991 * 109.47372 * 245.00301 * 3 2 1 29 29 H 1.08995 * 109.47263 * 60.00527 * 4 3 2 30 30 H 1.08995 * 109.47210 * 299.99833 * 4 3 2 31 31 H 0.97006 * 120.00217 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.47543 * 59.99407 * 8 7 5 33 33 H 1.09002 * 109.46900 * 300.00200 * 8 7 5 34 34 H 1.09005 * 109.47540 * 299.90214 * 10 9 8 35 35 H 1.09009 * 109.47494 * 59.90123 * 10 9 8 36 36 H 1.09002 * 109.47512 * 179.89846 * 10 9 8 37 37 H 1.09001 * 109.68446 * 291.94465 * 11 9 8 38 38 H 1.08991 * 109.68807 * 52.50281 * 11 9 8 39 39 H 0.97002 * 120.00383 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.67883 * 290.77953 * 21 12 11 41 41 H 1.08994 * 109.68171 * 170.26092 * 21 12 11 42 42 H 1.09004 * 109.51066 * 67.60375 * 22 21 12 43 43 H 1.09001 * 109.51236 * 187.70563 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7881 2.6385 1.1820 6 8 3.5690 3.4652 0.3221 7 7 4.7051 2.8871 2.1378 8 6 5.4368 4.1562 2.1386 9 6 6.4084 4.1842 3.3201 10 6 7.4006 3.0265 3.1932 11 6 7.1700 5.5145 3.3253 12 7 7.9556 5.5955 4.5680 13 6 9.2895 5.9041 4.5410 14 1 9.9384 5.5650 5.3349 15 6 9.8075 6.6529 3.4932 16 7 9.0006 7.3422 2.7148 17 14 11.6503 6.6824 3.1880 18 1 12.3325 5.8313 4.1957 19 1 11.9348 6.1627 1.8264 20 1 12.1483 8.0769 3.2998 21 6 7.2641 5.3342 5.8403 22 6 6.4979 4.0126 5.7125 23 8 5.6779 4.0552 4.5422 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 3.7399 0.5066 1.0920 30 1 2.4772 1.2356 2.1130 31 1 4.8801 2.2260 2.8258 32 1 4.7314 4.9824 2.2290 33 1 5.9941 4.2549 1.2070 34 1 6.8580 2.0811 3.1937 35 1 7.9573 3.1255 2.2612 36 1 8.0937 3.0481 4.0343 37 1 7.8384 5.5584 2.4654 38 1 6.4627 6.3427 3.2838 39 1 9.3626 7.8651 1.9824 40 1 6.5662 6.1443 6.0519 41 1 7.9942 5.2588 6.6461 42 1 7.2058 3.1877 5.6313 43 1 5.8707 3.8689 6.5924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107799304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:59 Heat of formation + Delta-G solvation = -46.801413 kcal Electronic energy + Delta-G solvation = -22839.912478 eV Core-core repulsion = 19500.215806 eV Total energy + Delta-G solvation = -3339.696671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.80804 -38.80468 -35.63819 -34.84031 -34.31778 -31.92003 -31.27856 -30.65233 -27.96894 -26.61376 -25.81244 -23.87887 -23.23895 -21.22540 -20.18399 -19.97198 -18.69539 -17.19943 -16.84587 -15.99672 -15.91461 -15.31779 -15.19011 -14.77694 -14.38535 -14.14913 -13.89868 -13.54824 -13.52420 -13.12102 -12.89999 -12.60709 -12.52076 -12.14792 -11.86787 -11.60446 -11.23493 -11.19993 -11.18664 -11.03366 -10.84545 -10.67817 -10.32944 -10.25007 -10.01782 -9.79961 -9.58034 -9.46799 -9.05664 -8.79161 -8.56060 -6.76277 -5.86399 -3.29790 2.04451 2.80976 3.31570 3.39152 3.41199 3.41866 4.23408 4.41909 4.65872 4.76067 4.97367 5.11548 5.13244 5.20554 5.32446 5.43526 5.48317 5.52181 5.63960 5.66863 5.80292 5.90054 5.92434 6.01257 6.02266 6.09434 6.12880 6.30582 6.40447 6.45040 6.55666 6.57309 6.69000 6.75294 6.80625 7.05488 7.45007 7.69119 7.71357 7.86447 8.30769 8.40951 9.08705 9.71914 10.29133 11.21598 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028177 B = 0.003571 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.483374 B = 7838.823408 C = 8354.314704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.080 4.080 4 C -0.135 4.135 5 C 0.506 3.494 6 O -0.547 6.547 7 N -0.718 5.718 8 C 0.139 3.861 9 C 0.078 3.922 10 C -0.161 4.161 11 C 0.159 3.841 12 N -0.591 5.591 13 C -0.254 4.254 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.290 1.290 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.402 0.598 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.029 0.971 39 H 0.255 0.745 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -14.306 -0.574 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.117 4.117 4 C -0.175 4.175 5 C 0.293 3.707 6 O -0.425 6.425 7 N -0.370 5.370 8 C 0.015 3.985 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.033 3.967 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.216 1.216 21 C -0.018 4.018 22 C -0.032 4.032 23 O -0.304 6.304 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.237 0.763 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.982 -13.579 -1.303 17.513 hybrid contribution 1.356 -0.175 0.244 1.389 sum -9.626 -13.754 -1.059 16.821 Atomic orbital electron populations 1.23873 0.96008 1.01828 1.01544 1.23000 0.96092 0.98435 0.99565 1.20505 0.97856 0.95247 0.98138 1.21608 0.99002 0.95881 1.01060 1.20670 0.79808 0.88943 0.81320 1.90700 1.65892 1.48346 1.37605 1.46018 1.40438 1.20360 1.30152 1.21344 0.94141 0.85655 0.97346 1.22547 0.91165 0.98922 0.83651 1.22203 0.99580 0.96542 1.03563 1.21305 0.93865 0.89774 0.91771 1.44028 1.06699 1.81462 0.99281 1.19196 0.82965 1.27376 1.08753 0.91363 1.25045 0.97854 0.96522 1.00160 1.70021 1.33583 1.30590 1.20325 0.86225 0.85239 0.77429 0.77893 1.20259 1.21456 1.21640 1.21597 0.95327 0.94343 0.90496 1.23034 0.94289 0.98682 0.87179 1.87811 1.33920 1.94630 1.14028 0.88617 0.88508 0.87386 0.90700 0.90179 0.88974 0.88924 0.76342 0.90968 0.90161 0.93929 0.91915 0.90839 0.88547 0.95272 0.93462 0.95667 0.92052 0.93396 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 14.32 29.02 0.42 -1.12 16 2 C -0.15 -1.27 9.52 -36.02 -0.34 -1.61 16 3 C -0.08 -0.81 4.95 -27.88 -0.14 -0.94 16 4 C -0.14 -1.33 5.68 -27.88 -0.16 -1.48 16 5 C 0.51 7.18 7.83 -10.98 -0.09 7.10 16 6 O -0.55 -9.97 15.98 5.56 0.09 -9.89 16 7 N -0.72 -10.12 5.15 -60.29 -0.31 -10.43 16 8 C 0.14 2.39 4.82 -4.04 -0.02 2.37 16 9 C 0.08 1.44 0.76 -90.47 -0.07 1.37 16 10 C -0.16 -2.71 7.92 37.15 0.29 -2.42 16 11 C 0.16 3.70 4.12 -3.49 -0.01 3.69 16 12 N -0.59 -14.30 2.57 -171.77 -0.44 -14.75 16 13 C -0.25 -6.70 9.65 -15.06 -0.15 -6.85 16 14 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 15 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 16 N -0.90 -25.60 11.14 55.49 0.62 -24.99 16 17 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.11 2.21 6.73 -3.53 -0.02 2.19 16 22 C 0.05 0.78 6.60 37.31 0.25 1.03 16 23 O -0.38 -6.98 9.97 -35.23 -0.35 -7.33 16 24 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 25 H 0.10 0.76 7.84 -52.48 -0.41 0.35 16 26 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 27 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 28 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.40 4.87 7.20 -40.82 -0.29 4.58 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.04 0.59 6.87 -51.93 -0.36 0.23 16 35 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.07 1.35 6.12 -51.93 -0.32 1.04 16 37 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 42 H 0.05 0.79 6.25 -51.93 -0.32 0.46 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -30.74 345.24 -7.39 -38.12 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.04 Total: 4.61 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -0.13 Total: 3.31 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.13 Total: -50.16 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.26 Total: -17.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.74 -7.39 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107799304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.677 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds