Wall clock time and date at job start Tue Mar 31 2020 02:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46858 * 2 1 4 4 O 1.42898 * 109.47446 * 239.99905 * 2 1 3 5 5 C 1.42900 * 114.00013 * 270.00053 * 4 2 1 6 6 C 1.50699 * 109.47352 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99713 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00325 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00063 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.55654 * 36.97492 * 9 8 6 11 11 C 1.54856 * 110.62242 * 160.04790 * 9 8 6 12 12 C 1.55840 * 103.44369 * 118.49152 * 11 9 8 13 13 H 1.09006 * 116.12470 * 159.14405 * 12 11 9 14 14 C 1.55844 * 105.06435 * 288.16850 * 12 11 9 15 15 C 1.54854 * 103.44321 * 71.82923 * 14 12 11 16 16 C 1.55839 * 110.62681 * 274.07103 * 9 8 6 17 17 H 1.09003 * 115.56016 * 82.69830 * 16 9 8 18 18 N 1.50235 * 101.05255 * 32.93569 * 12 11 9 19 19 C 1.36938 * 130.84171 * 126.01465 * 18 12 11 20 20 H 1.08000 * 119.99999 * 180.02562 * 19 18 12 21 21 C 1.38814 * 119.99715 * 0.02562 * 19 18 12 22 22 N 1.31616 * 120.00014 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99793 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47192 * 90.00055 * 23 21 19 25 25 H 1.48499 * 109.47471 * 210.00235 * 23 21 19 26 26 H 1.48503 * 109.47252 * 330.00211 * 23 21 19 27 27 H 1.09001 * 109.47535 * 299.99973 * 1 2 3 28 28 H 1.09005 * 109.47450 * 60.00453 * 1 2 3 29 29 H 1.09001 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46693 * 119.99731 * 2 1 3 31 31 H 1.08998 * 109.47511 * 59.99820 * 3 2 1 32 32 H 1.09004 * 109.47122 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47249 * 299.99390 * 3 2 1 34 34 H 1.08998 * 109.47149 * 299.99831 * 5 4 2 35 35 H 1.09006 * 109.46786 * 60.00125 * 5 4 2 36 36 H 0.97002 * 119.99782 * 0.02562 * 8 6 5 37 37 H 1.09009 * 110.62261 * 236.97888 * 11 9 8 38 38 H 1.08995 * 110.63252 * 359.97438 * 11 9 8 39 39 H 1.09003 * 110.62588 * 190.31535 * 14 12 11 40 40 H 1.08998 * 110.62727 * 313.17824 * 14 12 11 41 41 H 1.09003 * 110.62301 * 241.51368 * 15 14 12 42 42 H 1.08997 * 110.63077 * 118.48815 * 15 14 12 43 43 H 0.96999 * 119.99932 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 -2.0782 -0.9885 6 6 2.7004 -2.6835 -2.2748 7 8 2.8743 -1.9811 -3.2481 8 7 2.9554 -4.0050 -2.3432 9 6 3.4423 -4.5933 -3.5935 10 1 4.1264 -3.9103 -4.0969 11 6 4.1261 -5.9565 -3.3249 12 6 3.2543 -6.9646 -4.1325 13 1 3.7269 -7.9142 -4.3836 14 6 1.9162 -7.0683 -3.3403 15 6 1.2323 -5.7051 -3.6088 16 6 2.2504 -4.9635 -4.5267 17 1 1.8496 -4.1451 -5.1249 18 7 2.8343 -6.1136 -5.2972 19 6 2.9487 -6.3217 -6.6458 20 1 2.5810 -5.5804 -7.3397 21 6 3.5374 -7.4857 -7.1208 22 7 3.9851 -8.3893 -6.2751 23 14 3.6942 -7.7693 -8.9605 24 1 4.9867 -7.2158 -9.4383 25 1 3.6452 -9.2264 -9.2427 26 1 2.5754 -7.0912 -9.6631 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 2.9320 -2.2467 -0.1986 35 1 1.2537 -2.5433 -0.7124 36 1 2.8166 -4.5667 -1.5646 37 1 5.1510 -5.9517 -3.6963 38 1 4.1035 -6.1946 -2.2615 39 1 1.3058 -7.8862 -3.7230 40 1 2.1096 -7.2005 -2.2758 41 1 1.0865 -5.1586 -2.6771 42 1 0.2827 -5.8469 -4.1247 43 1 4.3961 -9.2028 -6.6071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109026835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:10 Heat of formation + Delta-G solvation = -38.292716 kcal Electronic energy + Delta-G solvation = -22988.885011 eV Core-core repulsion = 19649.557304 eV Total energy + Delta-G solvation = -3339.327706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04869 -38.81980 -37.67345 -33.89832 -32.94487 -32.31601 -29.51154 -29.07490 -28.38714 -27.48082 -26.59875 -24.11697 -21.56811 -21.40361 -20.63079 -19.49117 -18.57792 -17.27402 -17.09840 -16.65927 -15.99167 -15.36319 -14.95322 -14.75801 -14.48983 -14.08632 -13.91747 -13.48665 -13.00898 -12.77980 -12.44921 -12.33049 -12.22718 -12.08764 -11.76521 -11.63691 -11.48637 -11.03649 -10.94983 -10.90147 -10.88204 -10.82298 -10.20982 -10.08160 -9.82999 -9.82245 -9.54212 -9.36506 -9.21943 -8.92394 -8.49076 -6.90491 -5.71877 -3.09679 2.86354 2.94889 3.41246 3.46334 3.47866 3.98044 4.46804 4.61621 4.75866 4.89104 4.94602 5.01440 5.11762 5.22061 5.34062 5.39568 5.45298 5.55242 5.58137 5.59272 5.81724 5.85688 5.93603 5.97360 5.97540 6.07451 6.11887 6.30989 6.34299 6.54162 6.60762 6.68674 6.82884 6.92013 6.99276 7.04677 7.28040 7.53913 7.75048 7.85809 8.17803 8.53214 9.11709 9.74136 10.54444 11.37886 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.003583 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.273784 B = 7813.030125 C = 8076.493353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.356 6.356 5 C 0.044 3.956 6 C 0.508 3.492 7 O -0.521 6.521 8 N -0.712 5.712 9 C 0.129 3.871 10 H 0.082 0.918 11 C -0.140 4.140 12 C 0.153 3.847 13 H 0.155 0.845 14 C -0.137 4.137 15 C -0.130 4.130 16 C 0.128 3.872 17 H 0.086 0.914 18 N -0.590 5.590 19 C -0.209 4.209 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.924 5.924 23 Si 0.917 3.083 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.394 0.606 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 10.398 16.733 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.274 6.274 5 C -0.036 4.036 6 C 0.292 3.708 7 O -0.396 6.396 8 N -0.365 5.365 9 C 0.024 3.976 10 H 0.100 0.900 11 C -0.180 4.180 12 C 0.047 3.953 13 H 0.172 0.828 14 C -0.177 4.177 15 C -0.169 4.169 16 C 0.019 3.981 17 H 0.104 0.896 18 N -0.311 5.311 19 C -0.337 4.337 20 H 0.097 0.903 21 C -0.208 4.208 22 N -0.573 5.573 23 Si 0.748 3.252 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.228 0.772 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.194 10.841 15.532 19.400 hybrid contribution -0.142 -0.546 -0.175 0.591 sum -4.336 10.295 15.358 18.991 Atomic orbital electron populations 1.22316 0.95912 1.02468 1.02690 1.22153 0.93772 0.94030 0.88011 1.21848 1.01929 0.94347 1.02529 1.88087 1.86495 1.17926 1.34942 1.22275 1.00963 0.83966 0.96417 1.20156 0.78605 0.82604 0.89445 1.90731 1.50725 1.60620 1.37547 1.46145 1.67520 1.07497 1.15332 1.22647 0.97362 0.94408 0.83209 0.89996 1.23282 1.00379 0.95383 0.98918 1.23772 0.91001 0.96815 0.83747 0.82829 1.23055 1.00213 0.96478 0.97911 1.22896 0.98612 0.96970 0.98443 1.23204 0.92355 0.91366 0.91191 0.89642 1.46489 1.67289 1.16190 1.01105 1.19078 1.32239 1.02342 0.80054 0.90288 1.24694 1.01352 0.96752 0.97985 1.69430 1.45872 1.10059 1.31918 0.86022 0.77865 0.76991 0.84348 1.21641 1.21702 1.20747 0.91667 0.91534 0.92437 0.92190 0.91286 0.91906 0.91573 0.90672 0.90627 0.77154 0.91565 0.92706 0.92681 0.93661 0.93147 0.93074 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.53 37.15 0.35 -1.08 16 2 C 0.08 0.72 3.34 -26.73 -0.09 0.64 16 3 C -0.15 -1.23 9.56 37.16 0.36 -0.88 16 4 O -0.36 -4.77 9.52 -55.14 -0.52 -5.29 16 5 C 0.04 0.50 6.23 36.01 0.22 0.73 16 6 C 0.51 8.02 7.90 -10.99 -0.09 7.93 16 7 O -0.52 -10.89 16.23 -14.36 -0.23 -11.12 16 8 N -0.71 -10.45 3.63 -51.40 -0.19 -10.63 16 9 C 0.13 2.44 3.08 -65.43 -0.20 2.24 16 10 H 0.08 1.76 7.70 -51.93 -0.40 1.36 16 11 C -0.14 -2.63 6.20 -24.24 -0.15 -2.78 16 12 C 0.15 3.44 4.72 -62.81 -0.30 3.14 16 13 H 0.15 3.94 5.52 -51.93 -0.29 3.65 16 14 C -0.14 -2.62 6.44 -24.24 -0.16 -2.77 16 15 C -0.13 -2.39 6.33 -24.23 -0.15 -2.55 16 16 C 0.13 2.73 5.35 -62.80 -0.34 2.39 16 17 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 18 N -0.59 -14.82 2.99 -145.82 -0.44 -15.26 16 19 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.92 -26.23 10.46 55.49 0.58 -25.65 16 23 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 30 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 36 H 0.39 4.50 8.02 -40.82 -0.33 4.17 16 37 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 38 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.72 7.82 -51.93 -0.41 0.31 16 41 H 0.05 0.78 6.48 -51.93 -0.34 0.45 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -32.52 342.37 -8.58 -41.11 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.13 Total: 3.98 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.79 Total: 0.57 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.04 Total: -51.54 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.76 Total: -16.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.52 -8.58 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109026835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.814 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds