Wall clock time and date at job start Tue Mar 31 2020 02:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46858 * 2 1 4 4 O 1.42898 * 109.47446 * 239.99905 * 2 1 3 5 5 C 1.42900 * 114.00013 * 270.00053 * 4 2 1 6 6 C 1.50699 * 109.47352 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99713 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00325 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00063 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.55654 * 36.97492 * 9 8 6 11 11 C 1.54856 * 110.62242 * 160.04790 * 9 8 6 12 12 C 1.55840 * 103.44369 * 118.49152 * 11 9 8 13 13 H 1.09006 * 116.12470 * 159.14405 * 12 11 9 14 14 C 1.55844 * 105.06435 * 288.16850 * 12 11 9 15 15 C 1.54854 * 103.44321 * 71.82923 * 14 12 11 16 16 C 1.55839 * 110.62681 * 274.07103 * 9 8 6 17 17 H 1.09003 * 115.56016 * 82.69830 * 16 9 8 18 18 N 1.50235 * 101.05255 * 32.93569 * 12 11 9 19 19 C 1.36938 * 130.84171 * 126.01465 * 18 12 11 20 20 H 1.08000 * 119.99999 * 180.02562 * 19 18 12 21 21 C 1.38814 * 119.99715 * 0.02562 * 19 18 12 22 22 N 1.31616 * 120.00014 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99793 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47192 * 90.00055 * 23 21 19 25 25 H 1.48499 * 109.47471 * 210.00235 * 23 21 19 26 26 H 1.48503 * 109.47252 * 330.00211 * 23 21 19 27 27 H 1.09001 * 109.47535 * 299.99973 * 1 2 3 28 28 H 1.09005 * 109.47450 * 60.00453 * 1 2 3 29 29 H 1.09001 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46693 * 119.99731 * 2 1 3 31 31 H 1.08998 * 109.47511 * 59.99820 * 3 2 1 32 32 H 1.09004 * 109.47122 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47249 * 299.99390 * 3 2 1 34 34 H 1.08998 * 109.47149 * 299.99831 * 5 4 2 35 35 H 1.09006 * 109.46786 * 60.00125 * 5 4 2 36 36 H 0.97002 * 119.99782 * 0.02562 * 8 6 5 37 37 H 1.09009 * 110.62261 * 236.97888 * 11 9 8 38 38 H 1.08995 * 110.63252 * 359.97438 * 11 9 8 39 39 H 1.09003 * 110.62588 * 190.31535 * 14 12 11 40 40 H 1.08998 * 110.62727 * 313.17824 * 14 12 11 41 41 H 1.09003 * 110.62301 * 241.51368 * 15 14 12 42 42 H 1.08997 * 110.63077 * 118.48815 * 15 14 12 43 43 H 0.96999 * 119.99932 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 -2.0782 -0.9885 6 6 2.7004 -2.6835 -2.2748 7 8 2.8743 -1.9811 -3.2481 8 7 2.9554 -4.0050 -2.3432 9 6 3.4423 -4.5933 -3.5935 10 1 4.1264 -3.9103 -4.0969 11 6 4.1261 -5.9565 -3.3249 12 6 3.2543 -6.9646 -4.1325 13 1 3.7269 -7.9142 -4.3836 14 6 1.9162 -7.0683 -3.3403 15 6 1.2323 -5.7051 -3.6088 16 6 2.2504 -4.9635 -4.5267 17 1 1.8496 -4.1451 -5.1249 18 7 2.8343 -6.1136 -5.2972 19 6 2.9487 -6.3217 -6.6458 20 1 2.5810 -5.5804 -7.3397 21 6 3.5374 -7.4857 -7.1208 22 7 3.9851 -8.3893 -6.2751 23 14 3.6942 -7.7693 -8.9605 24 1 4.9867 -7.2158 -9.4383 25 1 3.6452 -9.2264 -9.2427 26 1 2.5754 -7.0912 -9.6631 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 2.9320 -2.2467 -0.1986 35 1 1.2537 -2.5433 -0.7124 36 1 2.8166 -4.5667 -1.5646 37 1 5.1510 -5.9517 -3.6963 38 1 4.1035 -6.1946 -2.2615 39 1 1.3058 -7.8862 -3.7230 40 1 2.1096 -7.2005 -2.2758 41 1 1.0865 -5.1586 -2.6771 42 1 0.2827 -5.8469 -4.1247 43 1 4.3961 -9.2028 -6.6071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109026835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:09 Heat of formation + Delta-G solvation = -59.155385 kcal Electronic energy + Delta-G solvation = -22989.789684 eV Core-core repulsion = 19649.557304 eV Total energy + Delta-G solvation = -3340.232380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49152 -40.05546 -38.76876 -35.46141 -34.23335 -33.64810 -31.03360 -30.88562 -29.80618 -28.22741 -27.78792 -26.02152 -22.91937 -22.20364 -22.05939 -21.18565 -20.16955 -18.98605 -18.11454 -17.87342 -17.02304 -16.84851 -16.57400 -16.24860 -15.77792 -15.53459 -15.14955 -14.64734 -14.13926 -13.91785 -13.81609 -13.51414 -13.42648 -13.20545 -13.03188 -12.88657 -12.84462 -12.78710 -12.61076 -12.36661 -12.30887 -12.00043 -11.90482 -11.60862 -11.54911 -11.18798 -11.04875 -10.78797 -10.73829 -10.58158 -9.98513 -8.86367 -7.80638 -5.19783 1.45304 1.46742 1.54819 1.65833 1.89281 2.48445 3.06139 3.32793 3.52412 3.78164 3.96530 4.06402 4.09683 4.14820 4.16895 4.25665 4.32939 4.38851 4.42848 4.47483 4.62039 4.71887 4.78204 4.81595 4.85726 4.94760 4.97528 4.98206 5.07411 5.15730 5.23645 5.32171 5.32944 5.36916 5.46863 5.54984 5.75991 5.89330 6.23066 6.28608 6.68929 7.05405 7.35852 7.68261 8.54394 9.26165 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.003583 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.273784 B = 7813.030125 C = 8076.493353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 C -0.150 4.150 4 O -0.397 6.397 5 C 0.050 3.950 6 C 0.503 3.497 7 O -0.582 6.582 8 N -0.694 5.694 9 C 0.147 3.853 10 H 0.047 0.953 11 C -0.124 4.124 12 C 0.136 3.864 13 H 0.121 0.879 14 C -0.125 4.125 15 C -0.115 4.115 16 C 0.116 3.884 17 H 0.060 0.940 18 N -0.620 5.620 19 C -0.227 4.227 20 H 0.068 0.932 21 C -0.062 4.062 22 N -0.943 5.943 23 Si 0.975 3.025 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.418 0.582 37 H 0.045 0.955 38 H 0.102 0.898 39 H 0.034 0.966 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 10.583 20.139 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 C -0.208 4.208 4 O -0.316 6.316 5 C -0.029 4.029 6 C 0.291 3.709 7 O -0.461 6.461 8 N -0.349 5.349 9 C 0.040 3.960 10 H 0.065 0.935 11 C -0.163 4.163 12 C 0.031 3.969 13 H 0.139 0.861 14 C -0.164 4.164 15 C -0.154 4.154 16 C 0.008 3.992 17 H 0.078 0.922 18 N -0.342 5.342 19 C -0.356 4.356 20 H 0.086 0.914 21 C -0.255 4.255 22 N -0.592 5.592 23 Si 0.804 3.196 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.203 1.203 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.256 0.744 37 H 0.064 0.936 38 H 0.120 0.880 39 H 0.053 0.947 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.044 11.024 19.014 22.550 hybrid contribution 0.108 -0.525 -1.213 1.326 sum -4.935 10.499 17.801 21.248 Atomic orbital electron populations 1.22312 0.95232 1.02801 1.02858 1.22420 0.94350 0.94112 0.87664 1.21895 1.01548 0.94353 1.02970 1.88053 1.87094 1.18997 1.37480 1.22352 1.03302 0.83314 0.93908 1.21105 0.77142 0.82243 0.90458 1.90717 1.53202 1.61996 1.40152 1.45835 1.66820 1.07739 1.14462 1.22056 0.95561 0.93887 0.84490 0.93464 1.23110 0.98348 0.93878 1.00981 1.23719 0.93294 0.96024 0.83898 0.86132 1.22948 0.97599 0.95883 0.99934 1.22805 0.96899 0.96540 0.99179 1.23330 0.94082 0.90213 0.91571 0.92188 1.46755 1.68273 1.18195 1.00967 1.19289 1.32117 1.02288 0.81902 0.91400 1.25395 1.01675 0.96739 1.01655 1.69655 1.46449 1.10088 1.33021 0.85117 0.77646 0.76653 0.80144 1.21639 1.21531 1.20258 0.89441 0.93444 0.92006 0.89475 0.88674 0.92549 0.93309 0.86936 0.87395 0.74390 0.93604 0.87985 0.94690 0.88978 0.89160 0.94148 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.53 71.98 0.69 -1.67 16 2 C 0.07 1.11 3.34 30.59 0.10 1.21 16 3 C -0.15 -2.21 9.56 71.98 0.69 -1.53 16 4 O -0.40 -9.78 9.52 -129.94 -1.24 -11.01 16 5 C 0.05 0.95 6.23 71.24 0.44 1.40 16 6 C 0.50 14.86 7.90 87.66 0.69 15.55 16 7 O -0.58 -24.55 16.23 16.00 0.26 -24.29 16 8 N -0.69 -18.24 3.63 -434.92 -1.58 -19.82 16 9 C 0.15 5.46 3.08 46.61 0.14 5.61 16 10 H 0.05 2.09 7.70 -2.39 -0.02 2.07 16 11 C -0.12 -4.46 6.20 32.21 0.20 -4.26 16 12 C 0.14 6.08 4.72 46.23 0.22 6.30 16 13 H 0.12 6.30 5.52 -2.38 -0.01 6.28 16 14 C -0.12 -4.45 6.44 32.21 0.21 -4.24 16 15 C -0.11 -4.00 6.33 32.21 0.20 -3.80 16 16 C 0.12 4.99 5.35 46.23 0.25 5.24 16 17 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 18 N -0.62 -31.97 2.99 -615.25 -1.84 -33.81 16 19 C -0.23 -13.13 10.59 84.03 0.89 -12.24 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 22 N -0.94 -54.98 10.46 21.65 0.23 -54.75 16 23 Si 0.98 46.79 29.55 68.60 2.03 48.81 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.77 7.87 -2.39 -0.02 0.75 16 30 H 0.09 0.88 7.79 -2.39 -0.02 0.86 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.11 1.37 7.87 -2.38 -0.02 1.35 16 36 H 0.42 7.21 8.02 -92.71 -0.74 6.46 16 37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.10 2.69 7.34 -2.39 -0.02 2.67 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 2.44 7.82 -2.39 -0.02 2.42 16 41 H 0.09 2.40 6.48 -2.39 -0.02 2.39 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -76.54 342.37 3.30 -73.25 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.25 Total: 17.12 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.19 Total: 4.51 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.19 Total: -108.38 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.98 Total: -35.31 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -76.54 3.30 -73.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109026835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.091 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds