Wall clock time and date at job start Tue Mar 31 2020 02:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 O 1.42906 * 109.46952 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99582 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47020 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99460 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99917 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99705 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.55789 * 36.97374 * 9 8 6 11 11 C 1.54855 * 110.62296 * 160.04298 * 9 8 6 12 12 C 1.55846 * 103.44273 * 118.49079 * 11 9 8 13 13 H 1.09000 * 116.12404 * 159.14576 * 12 11 9 14 14 C 1.55843 * 105.06392 * 288.17282 * 12 11 9 15 15 C 1.54858 * 103.44414 * 71.82447 * 14 12 11 16 16 C 1.55842 * 110.62760 * 274.07010 * 9 8 6 17 17 H 1.08999 * 115.56018 * 82.69740 * 16 9 8 18 18 N 1.50238 * 101.05157 * 208.57475 * 16 9 8 19 19 C 1.36926 * 130.83902 * 233.98980 * 18 16 9 20 20 H 1.08001 * 120.00059 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00193 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00043 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00106 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47200 * 59.99820 * 23 21 19 25 25 H 1.48506 * 109.46969 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46849 * 299.99786 * 23 21 19 27 27 H 1.08990 * 109.47241 * 59.99733 * 1 2 3 28 28 H 1.09001 * 109.46607 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47010 * 299.99827 * 1 2 3 30 30 H 1.09000 * 109.47600 * 239.99816 * 2 1 3 31 31 H 1.09004 * 109.47179 * 120.00168 * 2 1 3 32 32 H 1.09006 * 109.46715 * 60.00077 * 3 2 1 33 33 H 1.08990 * 109.47296 * 300.00234 * 3 2 1 34 34 H 1.08995 * 109.47443 * 300.00417 * 5 4 3 35 35 H 1.09006 * 109.46885 * 60.00773 * 5 4 3 36 36 H 0.96995 * 120.00168 * 359.97438 * 8 6 5 37 37 H 1.09000 * 110.62477 * 236.98029 * 11 9 8 38 38 H 1.09001 * 110.62805 * 0.02562 * 11 9 8 39 39 H 1.09001 * 110.62608 * 190.31544 * 14 12 11 40 40 H 1.09003 * 110.62870 * 313.17946 * 14 12 11 41 41 H 1.08993 * 110.62630 * 241.50809 * 15 14 12 42 42 H 1.09004 * 110.62329 * 118.48804 * 15 14 12 43 43 H 0.97005 * 119.99999 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5526 2.6290 0.0001 7 8 6.0741 1.5341 0.0001 8 7 6.3164 3.7394 0.0002 9 6 7.7769 3.6237 -0.0003 10 1 8.0939 2.7808 -0.6145 11 6 8.4280 4.9388 -0.4948 12 6 9.2724 5.4073 0.7284 13 1 10.0825 6.1042 0.5138 14 6 8.2287 5.8925 1.7791 15 6 7.5775 4.5774 2.2735 16 6 8.3165 3.4767 1.4543 17 1 8.2856 2.4686 1.8678 18 7 9.6823 4.0875 1.3179 19 6 10.9197 3.5934 1.6333 20 1 11.0145 2.6043 2.0564 21 6 12.0525 4.3637 1.4091 22 7 11.9371 5.5693 0.8939 23 14 13.7408 3.6892 1.8386 24 1 13.9908 2.4489 1.0613 25 1 14.7769 4.6998 1.5060 26 1 13.7967 3.3831 3.2907 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.7289 3.2884 -0.8903 35 1 3.7283 3.2894 0.8897 36 1 5.8993 4.6150 -0.0002 37 1 9.0703 4.7495 -1.3549 38 1 7.6644 5.6772 -0.7392 39 1 8.7234 6.4090 2.6017 40 1 7.4861 6.5396 1.3122 41 1 6.5104 4.5701 2.0513 42 1 7.7493 4.4417 3.3414 43 1 12.7287 6.1078 0.7375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109034299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:11 Heat of formation + Delta-G solvation = -40.851242 kcal Electronic energy + Delta-G solvation = -22709.314629 eV Core-core repulsion = 19369.875977 eV Total energy + Delta-G solvation = -3339.438652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.03715 -38.70041 -37.50915 -33.93260 -33.86340 -32.32732 -29.61017 -29.09219 -28.59112 -27.10115 -25.64589 -24.09235 -21.84408 -21.40393 -20.58025 -19.48648 -18.57125 -17.28232 -17.02037 -16.64988 -16.39574 -15.40291 -15.17882 -14.82795 -14.50884 -14.37514 -13.97213 -13.56637 -13.39797 -12.47590 -12.39653 -12.32453 -12.16091 -12.10683 -11.74723 -11.48685 -11.16952 -11.14245 -11.03292 -10.90482 -10.88444 -10.81229 -10.20900 -10.10201 -9.85705 -9.83265 -9.55017 -9.36509 -9.22200 -8.92011 -8.49361 -6.90529 -5.71650 -3.09503 2.85719 2.93403 3.42102 3.45747 3.47156 3.96001 4.47029 4.67461 4.72574 4.89065 5.01239 5.05088 5.07315 5.19006 5.20553 5.22399 5.39597 5.43688 5.57351 5.69167 5.81635 5.85117 5.85706 5.94192 5.97473 6.07445 6.11899 6.30883 6.34296 6.54122 6.60757 6.68351 6.82832 6.88127 6.98966 7.03011 7.27984 7.53559 7.74912 7.85522 8.17904 8.52554 9.11780 9.74245 10.54624 11.38026 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036074 B = 0.003308 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.999084 B = 8463.319962 C = 8819.683288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.363 6.363 5 C 0.045 3.955 6 C 0.508 3.492 7 O -0.521 6.521 8 N -0.712 5.712 9 C 0.129 3.871 10 H 0.082 0.918 11 C -0.140 4.140 12 C 0.154 3.846 13 H 0.155 0.845 14 C -0.137 4.137 15 C -0.129 4.129 16 C 0.128 3.872 17 H 0.086 0.914 18 N -0.590 5.590 19 C -0.210 4.210 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.925 5.925 23 Si 0.917 3.083 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.395 0.605 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 -1.080 -2.493 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.281 6.281 5 C -0.035 4.035 6 C 0.292 3.708 7 O -0.396 6.396 8 N -0.365 5.365 9 C 0.024 3.976 10 H 0.100 0.900 11 C -0.180 4.180 12 C 0.047 3.953 13 H 0.172 0.828 14 C -0.177 4.177 15 C -0.169 4.169 16 C 0.018 3.982 17 H 0.104 0.896 18 N -0.310 5.310 19 C -0.338 4.338 20 H 0.097 0.903 21 C -0.208 4.208 22 N -0.573 5.573 23 Si 0.748 3.252 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.229 0.771 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.539 -2.056 -2.470 19.802 hybrid contribution 0.351 0.392 0.242 0.579 sum -19.188 -1.664 -2.228 19.389 Atomic orbital electron populations 1.21693 0.94782 1.02241 1.01915 1.21451 0.95475 0.95545 1.03733 1.22615 0.80872 0.98158 1.00089 1.88026 1.19220 1.25480 1.95390 1.22232 0.92445 0.86663 1.02201 1.20148 0.88204 0.85099 0.77365 1.90732 1.74498 1.26480 1.47932 1.46141 1.07713 1.07831 1.74781 1.22652 0.76194 0.99227 0.99562 0.89986 1.23285 0.98796 0.94838 1.01057 1.23770 0.93694 0.89752 0.88082 0.82840 1.23058 0.98383 0.95746 1.00489 1.22895 0.97554 0.97101 0.99361 1.23207 0.86458 0.95613 0.92875 0.89624 1.46475 0.99646 1.13410 1.71505 1.19028 0.81402 0.99161 1.34188 0.90340 1.24695 0.97741 0.96512 1.01823 1.69423 1.27828 1.09896 1.50166 0.86097 0.83353 0.77678 0.78069 1.21194 1.21591 1.21264 0.92581 0.92009 0.92555 0.90973 0.90923 0.93266 0.93316 0.90651 0.90520 0.77134 0.91553 0.92701 0.92680 0.93659 0.93144 0.93072 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.56 16 2 C -0.12 -1.07 6.30 -26.73 -0.17 -1.24 16 3 C 0.06 0.55 5.94 37.16 0.22 0.77 16 4 O -0.36 -4.91 9.88 -55.14 -0.54 -5.46 16 5 C 0.04 0.51 6.42 36.01 0.23 0.74 16 6 C 0.51 8.02 7.90 -10.99 -0.09 7.94 16 7 O -0.52 -10.91 16.23 -14.36 -0.23 -11.14 16 8 N -0.71 -10.44 3.63 -51.39 -0.19 -10.63 16 9 C 0.13 2.44 3.08 -65.43 -0.20 2.24 16 10 H 0.08 1.76 7.70 -51.93 -0.40 1.36 16 11 C -0.14 -2.63 6.20 -24.23 -0.15 -2.78 16 12 C 0.15 3.44 4.72 -62.80 -0.30 3.14 16 13 H 0.15 3.93 5.52 -51.93 -0.29 3.65 16 14 C -0.14 -2.62 6.44 -24.23 -0.16 -2.78 16 15 C -0.13 -2.39 6.33 -24.23 -0.15 -2.54 16 16 C 0.13 2.72 5.35 -62.80 -0.34 2.38 16 17 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 18 N -0.59 -14.81 2.98 -145.82 -0.44 -15.24 16 19 C -0.21 -5.84 10.59 -15.07 -0.16 -6.00 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.92 -26.25 10.46 55.49 0.58 -25.67 16 23 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.39 4.49 8.02 -40.82 -0.33 4.16 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.72 7.82 -51.93 -0.41 0.31 16 41 H 0.05 0.78 6.48 -51.93 -0.34 0.45 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -32.54 343.59 -8.83 -41.37 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.18 Total: 3.57 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.98 Total: 0.88 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.04 Total: -51.54 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.78 Total: -16.60 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.54 -8.83 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109034299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.517 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds