Wall clock time and date at job start Tue Mar 31 2020 02:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 H 1.08998 * 109.47096 * 54.73591 * 3 2 1 5 5 O 1.42902 * 109.47423 * 294.73778 * 3 2 1 6 6 C 1.42897 * 114.00207 * 150.14315 * 5 3 2 7 7 C 1.50703 * 109.47236 * 174.73638 * 3 2 1 8 8 O 1.21283 * 119.99967 * 120.00243 * 7 3 2 9 9 N 1.34776 * 119.99885 * 300.00079 * 7 3 2 10 10 C 1.46501 * 120.00017 * 179.97438 * 9 7 3 11 11 H 1.09001 * 110.68103 * 32.01602 * 10 9 7 12 12 C 1.56679 * 111.26785 * 268.36601 * 10 9 7 13 13 C 1.55839 * 103.60221 * 241.34706 * 12 10 9 14 14 H 1.09001 * 115.56214 * 159.79612 * 13 12 10 15 15 C 1.55850 * 105.06528 * 288.40614 * 13 12 10 16 16 C 1.54849 * 103.44242 * 71.82334 * 15 13 12 17 17 C 1.55842 * 110.62647 * 154.99944 * 10 9 7 18 18 H 1.09001 * 115.56507 * 319.67872 * 17 10 9 19 19 N 1.50234 * 101.75031 * 86.07362 * 17 10 9 20 20 C 1.36939 * 130.83945 * 233.43795 * 19 17 10 21 21 H 1.07999 * 119.99556 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00000 * 180.02562 * 20 19 17 23 23 N 1.31622 * 120.00355 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99960 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47409 * 90.00031 * 24 22 20 26 26 H 1.48503 * 109.46865 * 209.99990 * 24 22 20 27 27 H 1.48496 * 109.47039 * 329.99747 * 24 22 20 28 28 H 1.09006 * 109.46833 * 185.21163 * 1 2 3 29 29 H 1.09003 * 109.47577 * 305.20800 * 1 2 3 30 30 H 1.09003 * 109.47191 * 65.21580 * 1 2 3 31 31 H 1.08997 * 109.47257 * 239.99892 * 2 1 3 32 32 H 1.09005 * 109.47286 * 119.99713 * 2 1 3 33 33 H 1.08997 * 109.47080 * 59.51520 * 6 5 3 34 34 H 1.09001 * 109.47290 * 179.51794 * 6 5 3 35 35 H 1.09004 * 109.47169 * 299.51645 * 6 5 3 36 36 H 0.96996 * 120.00144 * 359.97438 * 9 7 3 37 37 H 1.09003 * 110.35239 * 122.89968 * 12 10 9 38 38 H 1.09002 * 110.75227 * 359.97438 * 12 10 9 39 39 H 1.08996 * 110.62829 * 313.33755 * 15 13 12 40 40 H 1.09002 * 110.62674 * 190.31413 * 15 13 12 41 41 H 1.09002 * 110.63009 * 241.50917 * 16 15 13 42 42 H 1.09002 * 110.76558 * 118.55825 * 16 15 13 43 43 H 0.96995 * 120.00578 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6016 1.9828 0.8391 5 8 1.6672 2.0796 -1.2236 6 6 1.4637 3.4892 -1.1066 7 6 3.5413 1.4446 0.1303 8 8 4.2248 1.9426 -0.7390 9 7 4.1245 0.8931 1.2130 10 6 5.5840 0.8946 1.3395 11 1 6.0103 1.7804 0.8686 12 6 6.2080 -0.4103 0.7373 13 6 6.9158 -1.0745 1.9565 14 1 7.1212 -2.1404 1.8577 15 6 8.1553 -0.1748 2.2448 16 6 7.5350 1.1108 2.8451 17 6 6.0053 0.8129 2.8377 18 1 5.4070 1.4078 3.5277 19 7 5.9997 -0.6704 3.0766 20 6 5.3677 -1.4212 4.0316 21 1 4.7496 -0.9400 4.7751 22 6 5.5214 -2.8007 4.0439 23 7 6.2751 -3.3871 3.1381 24 14 4.6587 -3.8250 5.3462 25 1 3.3178 -4.2280 4.8511 26 1 5.4646 -5.0382 5.6358 27 1 4.5078 -3.0231 6.5869 28 1 -0.3633 -1.0235 0.0934 29 1 -0.3634 0.5925 0.8397 30 1 -0.3634 0.4308 -0.9330 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3820 3.9610 -0.7571 34 1 1.1920 3.8991 -2.0794 35 1 0.6618 3.6826 -0.3940 36 1 3.5778 0.4952 1.9085 37 1 6.9322 -0.1613 -0.0383 38 1 5.4300 -1.0638 0.3424 39 1 8.6888 0.0512 1.3217 40 1 8.8182 -0.6538 2.9653 41 1 7.7610 1.9745 2.2196 42 1 7.8898 1.2723 3.8630 43 1 6.3829 -4.3510 3.1469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110363813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:06 Heat of formation + Delta-G solvation = -63.965246 kcal Electronic energy + Delta-G solvation = -23621.370414 eV Core-core repulsion = 20280.929463 eV Total energy + Delta-G solvation = -3340.440951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40733 -40.27254 -38.32087 -35.47502 -34.61317 -34.09468 -30.95592 -30.48751 -29.74844 -28.38195 -26.85805 -26.02614 -23.40109 -22.65006 -21.51624 -21.14297 -20.32962 -18.84215 -18.48219 -18.05009 -16.99115 -16.70748 -16.35926 -15.98054 -15.76310 -15.26271 -15.11417 -14.97324 -14.68311 -14.28709 -13.72813 -13.63782 -13.39903 -13.01166 -12.90708 -12.84169 -12.74234 -12.69471 -12.45645 -12.12522 -12.05171 -11.95632 -11.88397 -11.75719 -11.70947 -11.57694 -11.09613 -10.94779 -10.85509 -10.21792 -9.93565 -8.85448 -7.73762 -5.13660 1.51377 1.52219 1.57118 1.60101 2.18385 2.52311 2.82199 3.39891 3.46069 3.68569 3.87745 3.91796 4.02916 4.06306 4.27421 4.33047 4.44338 4.44609 4.49097 4.53764 4.56960 4.63204 4.69314 4.81804 4.83840 4.85035 4.90115 5.08169 5.10162 5.13876 5.16577 5.18845 5.38003 5.38992 5.53019 5.60430 5.69883 5.90995 6.04391 6.26799 6.64275 7.07674 7.26678 7.74661 8.60627 9.33962 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.005781 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.528737 B = 4842.106171 C = 6048.433348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.082 3.918 4 H 0.115 0.885 5 O -0.379 6.379 6 C 0.025 3.975 7 C 0.483 3.517 8 O -0.579 6.579 9 N -0.699 5.699 10 C 0.137 3.863 11 H 0.084 0.916 12 C -0.133 4.133 13 C 0.143 3.857 14 H 0.114 0.886 15 C -0.133 4.133 16 C -0.121 4.121 17 C 0.128 3.872 18 H 0.104 0.896 19 N -0.608 5.608 20 C -0.214 4.214 21 H 0.087 0.913 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.973 3.027 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.271 1.271 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.031 0.969 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.407 0.593 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 11.305 -3.099 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C 0.020 3.980 4 H 0.133 0.867 5 O -0.297 6.297 6 C -0.071 4.071 7 C 0.270 3.730 8 O -0.459 6.459 9 N -0.350 5.350 10 C 0.030 3.970 11 H 0.102 0.898 12 C -0.173 4.173 13 C 0.036 3.964 14 H 0.131 0.869 15 C -0.173 4.173 16 C -0.160 4.160 17 C 0.021 3.979 18 H 0.122 0.878 19 N -0.329 5.329 20 C -0.343 4.343 21 H 0.105 0.895 22 C -0.258 4.258 23 N -0.598 5.598 24 Si 0.803 3.197 25 H -0.216 1.216 26 H -0.231 1.231 27 H -0.196 1.196 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.606 11.310 -3.727 14.693 hybrid contribution -0.084 -1.018 0.949 1.395 sum -8.690 10.292 -2.777 13.754 Atomic orbital electron populations 1.21670 0.92538 1.02731 1.02789 1.21605 0.98804 0.92112 1.02983 1.22194 0.88799 0.97195 0.89775 0.86750 1.87944 1.88146 1.22338 1.31253 1.23009 0.99942 0.80029 1.04092 1.22000 0.92452 0.77305 0.81221 1.90638 1.66323 1.47698 1.41212 1.45991 1.07922 1.58472 1.22600 1.22736 0.79551 0.96973 0.97719 0.89761 1.23613 0.99074 0.96444 0.98203 1.23509 0.88331 0.99107 0.85444 0.86859 1.22976 0.98059 0.96771 0.99469 1.22853 0.95534 0.97059 1.00582 1.23325 0.95865 0.85934 0.92774 0.87845 1.46673 1.53398 1.00910 1.31908 1.19363 1.21224 0.88683 1.05003 0.89479 1.25414 1.01805 0.97547 1.01061 1.69743 1.44089 1.08488 1.37525 0.85142 0.77367 0.78054 0.79124 1.21585 1.23064 1.19584 0.91648 0.91081 0.92166 0.92518 0.89822 0.95012 0.88151 0.91454 0.75681 0.92028 0.94765 0.91332 0.94272 0.90256 0.92095 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.76 71.98 0.70 -1.88 16 2 C -0.12 -2.82 5.59 30.59 0.17 -2.65 16 3 C 0.08 2.08 2.52 29.85 0.08 2.15 16 4 H 0.12 2.18 7.79 -2.39 -0.02 2.16 16 5 O -0.38 -10.34 9.53 -129.94 -1.24 -11.58 16 6 C 0.03 0.51 10.77 113.37 1.22 1.73 16 7 C 0.48 16.00 7.19 87.66 0.63 16.63 16 8 O -0.58 -23.62 16.12 16.00 0.26 -23.36 16 9 N -0.70 -22.87 5.00 -431.87 -2.16 -25.03 16 10 C 0.14 4.92 2.90 47.26 0.14 5.06 16 11 H 0.08 3.02 7.20 -2.39 -0.02 3.00 16 12 C -0.13 -5.47 6.29 32.86 0.21 -5.26 16 13 C 0.14 6.52 4.69 46.23 0.22 6.73 16 14 H 0.11 6.13 5.57 -2.39 -0.01 6.12 16 15 C -0.13 -5.15 6.44 32.21 0.21 -4.94 16 16 C -0.12 -4.06 6.44 32.21 0.21 -3.85 16 17 C 0.13 4.67 5.01 46.23 0.23 4.90 16 18 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 19 N -0.61 -27.93 2.99 -615.26 -1.84 -29.77 16 20 C -0.21 -10.83 10.59 84.03 0.89 -9.94 16 21 H 0.09 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 23 N -0.95 -54.08 10.48 21.65 0.23 -53.85 16 24 Si 0.97 43.46 29.55 68.60 2.03 45.49 16 25 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.13 7.97 -2.39 -0.02 1.11 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.04 7.42 -2.38 -0.02 2.02 16 33 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 0.97 8.09 -2.38 -0.02 0.95 16 36 H 0.41 12.52 8.02 -92.71 -0.74 11.77 16 37 H 0.06 2.37 7.82 -2.39 -0.02 2.36 16 38 H 0.03 1.54 8.03 -2.39 -0.02 1.52 16 39 H 0.07 2.34 7.82 -2.39 -0.02 2.32 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 2.26 7.79 -2.39 -0.02 2.24 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -65.61 343.46 2.88 -62.73 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.25 Total: 29.73 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.36 Total: 5.65 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -3.78 Total: -108.65 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.98 Total: -34.94 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.61 2.88 -62.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110363813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.239 kcal (2) G-P(sol) polarization free energy of solvation -65.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds