Wall clock time and date at job start Tue Mar 31 2020 02:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47454 * 2 1 4 4 C 1.53002 * 109.47274 * 120.00062 * 2 1 3 5 5 H 1.08991 * 109.47423 * 179.91301 * 4 2 1 6 6 O 1.42901 * 109.47020 * 299.91905 * 4 2 1 7 7 C 1.50704 * 109.46924 * 59.91358 * 4 2 1 8 8 O 1.21282 * 119.99955 * 245.17324 * 7 4 2 9 9 N 1.34780 * 120.00003 * 65.17131 * 7 4 2 10 10 C 1.46494 * 119.99890 * 174.43531 * 9 7 4 11 11 H 1.08999 * 110.56154 * 34.29986 * 10 9 7 12 12 C 1.54851 * 110.62841 * 271.39694 * 10 9 7 13 13 C 1.56212 * 103.27164 * 241.55019 * 12 10 9 14 14 H 1.09001 * 116.12358 * 159.09245 * 13 12 10 15 15 C 1.55847 * 105.00121 * 288.06009 * 13 12 10 16 16 C 1.56685 * 103.59871 * 71.65222 * 15 13 12 17 17 C 1.55842 * 110.62519 * 157.20018 * 10 9 7 18 18 H 1.09000 * 115.56519 * 319.67427 * 17 10 9 19 19 N 1.50229 * 101.12428 * 32.83022 * 13 12 10 20 20 C 1.36936 * 130.84638 * 126.09765 * 19 13 12 21 21 H 1.07993 * 120.00636 * 155.49621 * 20 19 13 22 22 C 1.38815 * 119.99228 * 335.50042 * 20 19 13 23 23 N 1.31623 * 119.99553 * 152.36509 * 22 20 19 24 24 Si 1.86801 * 120.00334 * 332.36164 * 22 20 19 25 25 H 1.48499 * 109.46873 * 84.39625 * 24 22 20 26 26 H 1.48508 * 109.46754 * 204.39612 * 24 22 20 27 27 H 1.48497 * 109.47051 * 324.39270 * 24 22 20 28 28 H 1.09003 * 109.47484 * 59.99905 * 1 2 3 29 29 H 1.08998 * 109.47247 * 300.00147 * 1 2 3 30 30 H 1.08997 * 109.47622 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47247 * 239.99853 * 2 1 3 32 32 H 1.09008 * 109.46879 * 54.92806 * 3 2 1 33 33 H 1.09001 * 109.47434 * 174.92533 * 3 2 1 34 34 H 1.08999 * 109.46862 * 294.93135 * 3 2 1 35 35 H 0.96699 * 114.00543 * 59.99644 * 6 4 2 36 36 H 0.96992 * 119.99729 * 354.43412 * 9 7 4 37 37 H 1.09004 * 110.62743 * 0.02562 * 12 10 9 38 38 H 1.09001 * 110.62742 * 123.01680 * 12 10 9 39 39 H 1.08996 * 110.62598 * 190.37399 * 15 13 12 40 40 H 1.09000 * 110.62830 * 313.23215 * 15 13 12 41 41 H 1.08995 * 111.43551 * 241.94017 * 16 15 13 42 42 H 1.08997 * 110.61350 * 118.35678 * 16 15 13 43 43 H 0.97003 * 119.99931 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1299 -0.7226 1.2485 6 8 1.5652 -0.0465 2.4160 7 6 1.5359 -2.1415 1.2503 8 8 0.7635 -2.5102 2.1096 9 7 1.9434 -3.0019 0.2962 10 6 1.5515 -4.4118 0.3656 11 1 0.5522 -4.5109 0.7892 12 6 2.5780 -5.2232 1.1938 13 6 3.1277 -6.2622 0.1649 14 1 4.0948 -6.7060 0.4012 15 6 1.9600 -7.2712 -0.0524 16 6 0.9138 -6.4508 -0.8816 17 6 1.6175 -5.0699 -1.0455 18 1 1.2575 -4.4536 -1.8693 19 7 3.0644 -5.4695 -1.1096 20 6 4.0283 -5.1956 -2.0428 21 1 3.7458 -4.9621 -3.0586 22 6 5.3688 -5.2182 -1.6830 23 7 6.2871 -5.4993 -2.5830 24 14 5.8695 -4.8495 0.0785 25 1 5.7638 -6.0870 0.8925 26 1 7.2711 -4.3593 0.1024 27 1 4.9716 -3.8089 0.6408 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6044 1.9819 0.8411 33 1 3.1263 1.4438 0.0909 34 1 1.7527 1.9294 -0.9319 35 1 0.6014 -0.0071 2.4828 36 1 2.4961 -2.6876 -0.4362 37 1 3.3785 -4.5765 1.5533 38 1 2.0873 -5.7269 2.0265 39 1 2.3028 -8.1398 -0.6146 40 1 1.5341 -7.5774 0.9031 41 1 -0.0258 -6.3412 -0.3403 42 1 0.7463 -6.9142 -1.8538 43 1 7.2239 -5.5148 -2.3317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110522175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:35 Heat of formation + Delta-G solvation = -51.967859 kcal Electronic energy + Delta-G solvation = -23994.965653 eV Core-core repulsion = 20655.044948 eV Total energy + Delta-G solvation = -3339.920705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33201 -39.14088 -36.95848 -34.34511 -33.50951 -32.61217 -29.70544 -29.32185 -28.73385 -27.37793 -26.67790 -24.03871 -22.02366 -20.84902 -20.08498 -19.79259 -19.17462 -17.63365 -17.07773 -16.42618 -16.31926 -15.67053 -15.20059 -14.62479 -14.41567 -13.72684 -13.61892 -13.43874 -13.20895 -13.01713 -12.68825 -12.41916 -12.33165 -12.26612 -11.78413 -11.50966 -11.37267 -11.28836 -11.09298 -11.05713 -11.02918 -10.89827 -10.57450 -10.49489 -10.35743 -9.91553 -9.78710 -9.50517 -9.19791 -8.70556 -8.62735 -7.19924 -6.08951 -3.35267 2.77463 3.27071 3.42480 3.44419 3.44963 4.24624 4.46173 4.57498 4.62374 4.67827 4.82065 5.04604 5.12687 5.29229 5.34767 5.41284 5.42394 5.50917 5.58628 5.65963 5.67527 5.74281 5.81769 5.88471 5.89762 5.91679 6.06509 6.07836 6.13793 6.18889 6.31211 6.41257 6.49445 6.64684 6.72936 6.88187 7.00646 7.41414 7.44921 7.85693 8.20090 8.45139 8.63885 9.54657 10.22075 11.06736 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.006508 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.076012 B = 4301.591143 C = 4975.327168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.140 4.140 4 C 0.093 3.907 5 H 0.122 0.878 6 O -0.537 6.537 7 C 0.485 3.515 8 O -0.548 6.548 9 N -0.704 5.704 10 C 0.128 3.872 11 H 0.084 0.916 12 C -0.151 4.151 13 C 0.121 3.879 14 H 0.099 0.901 15 C -0.129 4.129 16 C -0.126 4.126 17 C 0.128 3.872 18 H 0.096 0.904 19 N -0.598 5.598 20 C -0.237 4.237 21 H 0.088 0.912 22 C 0.032 3.968 23 N -0.896 5.896 24 Si 0.865 3.135 25 H -0.285 1.285 26 H -0.303 1.303 27 H -0.267 1.267 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.378 0.622 36 H 0.405 0.595 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 7.962 4.616 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.198 4.198 4 C 0.030 3.970 5 H 0.139 0.861 6 O -0.342 6.342 7 C 0.271 3.729 8 O -0.426 6.426 9 N -0.355 5.355 10 C 0.022 3.978 11 H 0.102 0.898 12 C -0.191 4.191 13 C 0.014 3.986 14 H 0.117 0.883 15 C -0.169 4.169 16 C -0.166 4.166 17 C 0.020 3.980 18 H 0.114 0.886 19 N -0.320 5.320 20 C -0.363 4.363 21 H 0.106 0.894 22 C -0.168 4.168 23 N -0.538 5.538 24 Si 0.695 3.305 25 H -0.213 1.213 26 H -0.231 1.231 27 H -0.192 1.192 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.227 0.773 36 H 0.240 0.760 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.426 7.802 5.138 13.999 hybrid contribution 0.305 0.184 0.565 0.668 sum -10.121 7.986 5.703 14.097 Atomic orbital electron populations 1.21871 0.94529 1.02423 1.02240 1.21774 0.96957 0.97893 0.97767 1.21738 1.01353 0.94746 1.01933 1.21976 1.00407 0.88069 0.86502 0.86052 1.86560 1.27628 1.77182 1.42864 1.21448 0.81310 0.88469 0.81688 1.90661 1.35302 1.78941 1.37695 1.46051 1.52987 1.09412 1.27040 1.22582 0.97401 0.79224 0.98624 0.89763 1.23646 0.98798 0.98868 0.97761 1.23312 0.96778 0.91268 0.87200 0.88296 1.23207 0.96758 0.98284 0.98622 1.23150 0.96780 0.96785 0.99844 1.23226 0.87468 0.93889 0.93375 0.88610 1.46764 1.05838 1.55867 1.23560 1.18482 0.84350 1.44283 0.89201 0.89421 1.25119 0.95373 0.99562 0.96755 1.69920 1.01120 1.48238 1.34476 0.87139 0.76893 0.79408 0.87068 1.21259 1.23064 1.19206 0.91799 0.92423 0.92221 0.89481 0.92036 0.92329 0.92423 0.77275 0.75960 0.91681 0.91797 0.91990 0.92646 0.92251 0.91725 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.64 37.16 0.32 -1.19 16 2 C -0.12 -1.32 2.76 -90.62 -0.25 -1.57 16 3 C -0.14 -1.32 8.98 37.16 0.33 -0.98 16 4 C 0.09 1.23 3.19 -27.88 -0.09 1.14 16 5 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 6 O -0.54 -7.26 12.37 -55.09 -0.68 -7.94 16 7 C 0.49 7.79 5.89 -10.98 -0.06 7.73 16 8 O -0.55 -10.35 15.98 -14.30 -0.23 -10.58 16 9 N -0.70 -11.51 5.05 -51.40 -0.26 -11.76 16 10 C 0.13 2.21 2.80 -65.44 -0.18 2.03 16 11 H 0.08 1.44 7.20 -51.93 -0.37 1.06 16 12 C -0.15 -2.84 5.95 -24.03 -0.14 -2.98 16 13 C 0.12 2.46 3.71 -62.60 -0.23 2.23 16 14 H 0.10 2.21 5.37 -51.93 -0.28 1.94 16 15 C -0.13 -2.21 6.49 -23.22 -0.15 -2.36 16 16 C -0.13 -2.00 6.58 -23.22 -0.15 -2.15 16 17 C 0.13 2.26 5.00 -62.80 -0.31 1.95 16 18 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 19 N -0.60 -13.06 2.61 -145.60 -0.38 -13.44 16 20 C -0.24 -6.16 10.82 -15.06 -0.16 -6.33 16 21 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 22 C 0.03 0.88 5.45 -17.43 -0.09 0.79 16 23 N -0.90 -26.35 13.97 55.49 0.78 -25.57 16 24 Si 0.87 21.26 24.72 -169.99 -4.20 17.06 16 25 H -0.29 -6.93 6.13 56.52 0.35 -6.58 16 26 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.27 -6.32 6.06 56.52 0.34 -5.97 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.51 6.78 -51.93 -0.35 0.16 16 30 H 0.06 0.68 7.21 -51.93 -0.37 0.30 16 31 H 0.09 0.92 7.77 -51.93 -0.40 0.51 16 32 H 0.06 0.57 7.84 -51.92 -0.41 0.17 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.38 4.31 7.08 45.56 0.32 4.63 16 36 H 0.41 6.50 8.26 -40.82 -0.34 6.17 16 37 H 0.06 1.36 5.84 -51.93 -0.30 1.05 16 38 H 0.06 1.10 7.82 -51.93 -0.41 0.70 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 41 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -30.69 330.41 -7.54 -38.23 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.36 Total: 10.72 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.18 Total: -1.69 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.14 Total: -50.78 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.91 Total: -18.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.20 Total: 17.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.69 -7.54 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110522175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.739 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds