Wall clock time and date at job start Tue Mar 31 2020 02:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 C 1.52998 * 109.47521 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47437 * 180.02562 * 4 3 2 6 6 C 1.42893 * 114.00253 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47337 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00182 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99790 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99510 * 179.97438 * 9 7 6 11 11 H 1.09000 * 115.51890 * 350.58684 * 10 9 7 12 12 C 1.52997 * 117.44282 * 205.16515 * 10 9 7 13 13 H 1.08999 * 119.53525 * 4.12468 * 12 10 9 14 14 C 1.54390 * 118.12219 * 159.21194 * 12 10 9 15 15 N 1.51694 * 102.89061 * 88.05310 * 14 12 10 16 16 C 1.36936 * 127.60904 * 140.54454 * 15 14 12 17 17 H 1.08010 * 119.99498 * 194.71679 * 16 15 14 18 18 C 1.38809 * 120.00657 * 14.71416 * 16 15 14 19 19 N 1.31619 * 119.99806 * 9.01770 * 18 16 15 20 20 Si 1.86793 * 120.00379 * 189.01716 * 18 16 15 21 21 H 1.48503 * 109.47171 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47189 * 120.00188 * 20 18 16 23 23 H 1.48497 * 109.47551 * 240.00134 * 20 18 16 24 24 C 1.48146 * 104.54911 * 320.31028 * 15 14 12 25 25 C 1.53003 * 117.43820 * 135.99772 * 10 9 7 26 26 H 1.08994 * 119.54218 * 355.88290 * 25 10 9 27 27 H 1.08999 * 109.47096 * 299.99391 * 1 2 3 28 28 H 1.09000 * 109.47417 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47723 * 59.99994 * 1 2 3 30 30 H 1.08999 * 109.47723 * 120.00006 * 2 1 3 31 31 H 1.08999 * 109.47096 * 240.00609 * 2 1 3 32 32 H 1.09004 * 109.47186 * 300.00365 * 3 2 1 33 33 H 1.08997 * 109.47128 * 59.99772 * 3 2 1 34 34 H 1.09004 * 109.47077 * 300.00295 * 4 3 2 35 35 H 1.08998 * 109.46778 * 59.99991 * 4 3 2 36 36 H 1.09002 * 109.47147 * 300.00057 * 6 5 4 37 37 H 1.08997 * 109.47460 * 59.99809 * 6 5 4 38 38 H 0.96993 * 120.00438 * 0.02562 * 9 7 6 39 39 H 1.09007 * 110.40600 * 205.97721 * 14 12 10 40 40 H 1.08995 * 110.40805 * 328.41251 * 14 12 10 41 41 H 0.97001 * 120.00385 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.40451 * 281.02947 * 24 15 14 43 43 H 1.09000 * 110.40674 * 158.60265 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4707 2.9027 -0.0012 7 6 5.8593 4.3588 0.0002 8 8 5.0009 5.2155 0.0025 9 7 7.1609 4.7089 0.0000 10 6 7.5385 6.1244 0.0008 11 1 6.7219 6.8284 -0.1593 12 6 8.9075 6.4892 -0.5768 13 1 9.5250 5.7122 -1.0274 14 6 9.1383 7.9443 -1.0385 15 7 9.6186 8.6288 0.2272 16 6 10.6025 9.5740 0.3442 17 1 11.0125 9.8093 1.3153 18 6 11.0729 10.2298 -0.7852 19 7 10.4580 10.0771 -1.9388 20 14 12.5785 11.3291 -0.6677 21 1 13.0816 11.3319 0.7295 22 1 13.6376 10.8164 -1.5737 23 1 12.2137 12.7125 -1.0657 24 6 8.7818 8.0499 1.3039 25 6 8.6644 6.5531 0.9440 26 1 9.1007 5.8239 1.6265 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.9337 0.9285 0.8891 35 1 3.9328 0.9289 -0.8909 36 1 5.8743 2.4185 0.8881 37 1 5.8728 2.4198 -0.8918 38 1 7.8474 4.0237 -0.0014 39 1 9.9092 7.9810 -1.8083 40 1 8.2091 8.3774 -1.4087 41 1 10.7864 10.5356 -2.7280 42 1 7.7970 8.5171 1.3126 43 1 9.2695 8.1712 2.2711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114083768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:50 Heat of formation + Delta-G solvation = -32.233778 kcal Electronic energy + Delta-G solvation = -21329.037053 eV Core-core repulsion = 17989.972082 eV Total energy + Delta-G solvation = -3339.064971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90384 -38.58017 -37.67159 -35.23760 -34.36634 -32.66792 -30.48094 -29.82275 -27.66021 -27.12705 -25.45305 -23.62437 -22.00381 -21.47556 -20.58023 -20.18729 -19.21386 -17.23324 -17.04517 -16.81880 -16.71469 -15.85065 -15.55673 -14.83797 -14.65574 -14.36325 -13.94355 -13.58031 -13.32858 -13.14375 -13.01392 -12.73446 -12.21693 -12.18758 -11.87941 -11.50607 -11.48337 -11.45449 -11.28410 -11.01580 -10.99972 -10.84342 -10.43322 -10.20301 -10.12323 -9.96710 -9.76825 -9.66147 -9.20979 -8.75026 -8.35217 -6.87405 -5.78458 -3.11609 2.59566 2.66570 3.38488 3.44475 3.47080 3.72214 4.29959 4.47082 4.53225 4.56675 4.69734 4.75138 4.85501 4.87080 4.99030 5.03698 5.14497 5.22098 5.34781 5.38161 5.41965 5.44137 5.51955 5.56020 5.74607 5.79159 5.86655 5.89270 5.94336 6.13204 6.21182 6.52583 6.69648 6.70639 6.87198 6.89861 7.30928 7.51706 7.55090 7.70485 8.15258 8.26913 9.07076 9.73536 10.50175 11.36610 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.067747 B = 0.002242 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.200546 B =12484.733791 C =12555.118994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.060 3.940 5 O -0.363 6.363 6 C 0.047 3.953 7 C 0.514 3.486 8 O -0.517 6.517 9 N -0.697 5.697 10 C 0.096 3.904 11 H 0.132 0.868 12 C -0.177 4.177 13 H 0.102 0.898 14 C 0.185 3.815 15 N -0.599 5.599 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.917 5.917 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.158 3.842 25 C -0.182 4.182 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.399 0.601 39 H 0.092 0.908 40 H 0.033 0.967 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -21.977 3.383 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.017 4.017 5 O -0.281 6.281 6 C -0.033 4.033 7 C 0.299 3.701 8 O -0.391 6.391 9 N -0.348 5.348 10 C -0.010 4.010 11 H 0.150 0.850 12 C -0.198 4.198 13 H 0.120 0.880 14 C 0.060 3.940 15 N -0.323 5.323 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.563 5.563 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.031 3.969 25 C -0.203 4.203 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.232 0.768 39 H 0.111 0.889 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.610 -20.995 3.266 24.708 hybrid contribution 1.452 -0.183 0.003 1.464 sum -11.158 -21.179 3.269 24.160 Atomic orbital electron populations 1.21754 0.95340 1.01694 1.02191 1.21439 0.96356 0.95952 1.02140 1.21551 0.93151 0.97235 1.03850 1.22606 0.95533 0.83374 1.00179 1.88019 1.18491 1.26175 1.95415 1.22174 0.83952 0.94722 1.02499 1.20176 0.82669 0.90414 0.76847 1.90742 1.49227 1.51661 1.47467 1.45264 1.06663 1.07870 1.74999 1.21877 0.93395 0.81802 1.03880 0.85022 1.24580 0.96416 1.01909 0.96926 0.88011 1.21694 0.98702 0.83281 0.90336 1.46048 1.39369 1.45495 1.01416 1.19063 1.09850 1.12160 0.94110 0.90463 1.24875 1.00008 0.99406 0.96179 1.69892 1.40384 1.46456 0.99612 0.86041 0.82311 0.79995 0.77373 1.20406 1.21688 1.21714 1.21067 0.94520 0.88353 0.92946 1.24367 1.02287 0.99788 0.93895 0.87900 0.92529 0.92633 0.92520 0.91863 0.91849 0.90864 0.90881 0.93214 0.93176 0.90336 0.90277 0.76762 0.88932 0.94950 0.93616 0.95563 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.15 0.37 -0.48 16 2 C -0.12 -0.70 5.93 -26.74 -0.16 -0.86 16 3 C -0.12 -0.94 5.58 -26.73 -0.15 -1.09 16 4 C 0.06 0.50 5.94 37.16 0.22 0.72 16 5 O -0.36 -4.49 9.88 -55.14 -0.54 -5.03 16 6 C 0.05 0.47 6.42 36.01 0.23 0.70 16 7 C 0.51 7.43 7.91 -10.98 -0.09 7.34 16 8 O -0.52 -10.11 16.07 -14.35 -0.23 -10.34 16 9 N -0.70 -9.20 5.56 -53.80 -0.30 -9.50 16 10 C 0.10 1.63 5.97 -67.93 -0.41 1.22 16 11 H 0.13 2.58 7.40 -51.93 -0.38 2.19 16 12 C -0.18 -3.30 6.96 -89.29 -0.62 -3.92 16 13 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 14 C 0.18 4.43 5.92 -0.37 0.00 4.42 16 15 N -0.60 -15.42 3.45 -165.82 -0.57 -15.99 16 16 C -0.22 -6.25 10.36 -15.06 -0.16 -6.40 16 17 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 18 C -0.01 -0.22 5.42 -17.43 -0.09 -0.32 16 19 N -0.92 -26.91 10.82 55.49 0.60 -26.31 16 20 Si 0.91 21.97 29.56 -169.99 -5.03 16.95 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.16 3.37 7.05 -2.41 -0.02 3.35 16 25 C -0.18 -3.23 7.05 -89.29 -0.63 -3.86 16 26 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.40 3.84 8.83 -40.82 -0.36 3.48 16 39 H 0.09 2.45 6.57 -51.93 -0.34 2.11 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -33.81 356.30 -9.60 -43.41 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.40 Total: 0.63 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.50 Total: 0.82 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.27 Total: -51.81 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.78 Total: -15.37 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.81 -9.60 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114083768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.176 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds