Wall clock time and date at job start Tue Mar 31 2020 02:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 H 1.09004 * 109.47527 * 54.99788 * 3 2 1 5 5 C 1.52997 * 109.47395 * 174.99903 * 3 2 1 6 6 O 1.42898 * 109.47028 * 294.99681 * 3 2 1 7 7 C 1.42898 * 114.00153 * 149.99997 * 6 3 2 8 8 C 1.50705 * 109.47384 * 180.02562 * 7 6 3 9 9 O 1.21277 * 119.99598 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00049 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99890 * 179.97438 * 10 8 7 12 12 H 1.08996 * 115.51366 * 350.58115 * 11 10 8 13 13 C 1.53002 * 117.44326 * 205.16545 * 11 10 8 14 14 H 1.08997 * 119.53592 * 4.16586 * 13 11 10 15 15 C 1.54384 * 118.12343 * 159.25464 * 13 11 10 16 16 N 1.51510 * 102.93787 * 88.08391 * 15 13 11 17 17 C 1.36929 * 127.63461 * 140.52761 * 16 15 13 18 18 H 1.08009 * 120.00007 * 194.68587 * 17 16 15 19 19 C 1.38812 * 120.00332 * 14.69489 * 17 16 15 20 20 N 1.31618 * 119.99537 * 8.93388 * 19 17 16 21 21 Si 1.86799 * 120.00372 * 188.93654 * 19 17 16 22 22 H 1.48503 * 109.47117 * 94.09968 * 21 19 17 23 23 H 1.48496 * 109.47375 * 214.10319 * 21 19 17 24 24 H 1.48504 * 109.46993 * 334.10449 * 21 19 17 25 25 C 1.48149 * 104.52752 * 320.25164 * 16 15 13 26 26 C 1.52998 * 117.44169 * 135.99918 * 11 10 8 27 27 H 1.08999 * 119.54036 * 355.83591 * 26 11 10 28 28 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47169 * 300.00011 * 1 2 3 30 30 H 1.08998 * 109.47092 * 60.00502 * 1 2 3 31 31 H 1.08996 * 109.47419 * 239.99549 * 2 1 3 32 32 H 1.09008 * 109.47084 * 119.99464 * 2 1 3 33 33 H 1.09004 * 109.46877 * 59.99486 * 5 3 2 34 34 H 1.08992 * 109.47407 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47184 * 300.00333 * 5 3 2 36 36 H 1.09002 * 109.47376 * 59.99909 * 7 6 3 37 37 H 1.09004 * 109.47163 * 299.99764 * 7 6 3 38 38 H 0.97000 * 120.00016 * 359.97438 * 10 8 7 39 39 H 1.08997 * 110.41240 * 205.97896 * 15 13 11 40 40 H 1.08999 * 110.40864 * 328.41342 * 15 13 11 41 41 H 0.96999 * 119.99900 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.40830 * 281.08211 * 25 16 15 43 43 H 1.08995 * 110.41050 * 158.64682 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6621 2.0813 -1.2211 7 6 1.4560 3.4902 -1.1004 8 6 1.0628 4.0570 -2.4403 9 8 0.9688 3.3264 -3.4037 10 7 0.8166 5.3759 -2.5681 11 6 0.4349 5.9270 -3.8707 12 1 0.5264 5.2434 -4.7147 13 6 0.7332 7.4058 -4.1255 14 1 1.2733 7.9822 -3.3745 15 6 0.8054 7.8920 -5.5891 16 7 -0.6340 8.2493 -5.8992 17 6 -1.0930 9.3153 -6.6258 18 1 -2.1358 9.5924 -6.5782 19 6 -0.2181 10.0398 -7.4236 20 7 1.0074 9.6024 -7.6217 21 14 -0.7799 11.6352 -8.2162 22 1 -0.4040 12.7790 -7.3469 23 1 -0.1281 11.7858 -9.5419 24 1 -2.2546 11.6092 -8.3897 25 6 -1.4302 7.1840 -5.2464 26 6 -0.7168 6.9338 -3.9003 27 1 -1.2581 7.1582 -2.9813 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.9994 0.9052 -0.7161 34 1 3.9282 2.4719 0.1253 35 1 3.8532 0.9570 1.0571 36 1 2.3769 3.9644 -0.7610 37 1 0.6618 3.6808 -0.3785 38 1 0.8922 5.9603 -1.7975 39 1 1.4415 8.7737 -5.6658 40 1 1.1766 7.0970 -6.2358 41 1 1.6189 10.1088 -8.1789 42 1 -1.4243 6.2789 -5.8537 43 1 -2.4523 7.5229 -5.0776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114145625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:50 Heat of formation + Delta-G solvation = -28.729606 kcal Electronic energy + Delta-G solvation = -21859.456252 eV Core-core repulsion = 18520.543233 eV Total energy + Delta-G solvation = -3338.913019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94158 -38.77533 -37.85618 -34.38388 -34.02634 -32.65052 -30.39320 -30.13284 -28.00151 -27.13025 -25.47601 -23.94088 -21.96139 -21.32983 -20.58017 -20.21225 -19.21600 -17.37659 -17.14084 -16.79204 -16.21013 -15.98271 -14.90212 -14.66634 -14.49726 -14.14399 -13.80197 -13.52344 -13.43145 -13.23309 -12.94716 -12.73622 -12.35873 -12.18744 -11.91449 -11.68264 -11.47258 -11.46607 -11.28936 -11.00569 -10.85831 -10.83164 -10.43437 -10.20453 -10.13177 -9.88916 -9.75291 -9.65812 -9.20886 -8.74566 -8.34699 -6.87593 -5.78292 -3.11651 2.60560 2.68894 3.38916 3.44246 3.46585 3.76946 4.30155 4.42044 4.47672 4.64288 4.68693 4.79730 4.86286 4.98253 5.03216 5.14749 5.24021 5.32481 5.35043 5.36100 5.38449 5.56084 5.63629 5.70074 5.79506 5.83562 5.87337 5.89389 6.07980 6.13617 6.21606 6.52776 6.69804 6.73929 6.89469 6.92098 7.31121 7.51843 7.55793 7.70504 8.15752 8.27856 9.07383 9.73571 10.50280 11.36648 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.049920 B = 0.002630 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.762496 B =10642.689560 C =10891.545504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.061 0.939 5 C -0.177 4.177 6 O -0.353 6.353 7 C 0.046 3.954 8 C 0.514 3.486 9 O -0.516 6.516 10 N -0.698 5.698 11 C 0.096 3.904 12 H 0.132 0.868 13 C -0.177 4.177 14 H 0.102 0.898 15 C 0.184 3.816 16 N -0.598 5.598 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.158 3.842 26 C -0.182 4.182 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.398 0.602 39 H 0.093 0.907 40 H 0.032 0.968 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -13.912 19.537 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.235 4.235 6 O -0.271 6.271 7 C -0.035 4.035 8 C 0.299 3.701 9 O -0.391 6.391 10 N -0.348 5.348 11 C -0.009 4.009 12 H 0.150 0.850 13 C -0.198 4.198 14 H 0.120 0.880 15 C 0.060 3.940 16 N -0.323 5.323 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.564 5.564 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.031 3.969 26 C -0.204 4.204 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.111 0.889 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.618 -14.377 18.456 23.542 hybrid contribution -0.092 1.395 0.416 1.459 sum 2.526 -12.982 18.872 23.045 Atomic orbital electron populations 1.21750 0.95265 1.01735 1.02320 1.21624 0.96763 0.94609 1.02759 1.22238 0.94337 0.94245 0.86726 0.92095 1.22316 0.96049 1.02525 1.02574 1.88075 1.89359 1.17826 1.31877 1.22220 1.01381 0.84272 0.95584 1.20181 0.77565 0.82150 0.90185 1.90740 1.49938 1.58392 1.39985 1.45269 1.70024 1.07808 1.11729 1.21871 1.01254 0.91742 0.86072 0.85031 1.24580 0.98851 0.93758 1.02642 0.88025 1.21664 0.87501 0.99038 0.85826 1.45997 1.00601 1.25322 1.60343 1.19032 0.94672 1.03109 1.18419 0.90485 1.24879 0.96743 1.00036 0.98797 1.69884 1.05827 1.38706 1.41935 0.86087 0.77814 0.83259 0.78504 1.21611 1.21690 1.20536 1.21072 0.94355 0.92038 0.89449 1.24367 0.91881 1.03363 1.00751 0.87909 0.92693 0.93138 0.91628 0.90836 0.90749 0.91490 0.92406 0.91577 0.90427 0.90420 0.76795 0.88918 0.94989 0.93574 0.95561 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.81 37.16 0.36 -0.87 16 2 C -0.12 -0.93 5.64 -26.73 -0.15 -1.08 16 3 C 0.08 0.68 2.72 -26.73 -0.07 0.61 16 4 H 0.06 0.40 7.79 -51.93 -0.40 0.00 16 5 C -0.18 -1.28 9.53 37.16 0.35 -0.92 16 6 O -0.35 -4.23 9.06 -55.14 -0.50 -4.73 16 7 C 0.05 0.46 6.23 36.01 0.22 0.68 16 8 C 0.51 7.37 7.91 -10.98 -0.09 7.29 16 9 O -0.52 -10.00 16.07 -14.35 -0.23 -10.24 16 10 N -0.70 -9.19 5.56 -53.81 -0.30 -9.49 16 11 C 0.10 1.63 5.97 -67.93 -0.41 1.23 16 12 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 13 C -0.18 -3.30 6.96 -89.30 -0.62 -3.92 16 14 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 15 C 0.18 4.43 5.91 -0.48 0.00 4.42 16 16 N -0.60 -15.40 3.44 -165.99 -0.57 -15.97 16 17 C -0.22 -6.26 10.36 -15.06 -0.16 -6.41 16 18 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 19 C -0.01 -0.22 5.42 -17.43 -0.09 -0.31 16 20 N -0.92 -26.92 10.82 55.49 0.60 -26.31 16 21 Si 0.91 21.98 29.56 -169.99 -5.03 16.95 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.16 3.36 7.05 -2.40 -0.02 3.34 16 26 C -0.18 -3.24 7.05 -89.29 -0.63 -3.87 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.40 7.87 -51.93 -0.41 -0.01 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 37 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.40 3.86 8.83 -40.82 -0.36 3.50 16 39 H 0.09 2.46 6.55 -51.93 -0.34 2.12 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -33.53 354.32 -9.31 -42.84 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.33 Total: 1.42 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.30 Total: 0.19 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.27 Total: -51.78 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.73 Total: -14.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.53 -9.31 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114145625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.110 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds