Wall clock time and date at job start Tue Mar 31 2020 02:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46919 * 2 1 4 4 H 1.08994 * 109.47481 * 305.00037 * 3 2 1 5 5 C 1.53000 * 109.46761 * 184.99877 * 3 2 1 6 6 O 1.42900 * 109.46962 * 65.00512 * 3 2 1 7 7 C 1.42895 * 114.00035 * 209.99942 * 6 3 2 8 8 C 1.50700 * 109.47620 * 179.97438 * 7 6 3 9 9 O 1.21289 * 119.99350 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00436 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00380 * 180.02562 * 10 8 7 12 12 H 1.09007 * 115.51246 * 350.41308 * 11 10 8 13 13 C 1.52999 * 117.44470 * 205.00035 * 11 10 8 14 14 H 1.08997 * 119.54050 * 5.70837 * 13 11 10 15 15 C 1.54388 * 118.12266 * 160.80827 * 13 11 10 16 16 N 1.48135 * 104.61886 * 87.18736 * 15 13 11 17 17 C 1.36944 * 127.83903 * 140.41395 * 16 15 13 18 18 H 1.07998 * 120.00243 * 195.57632 * 17 16 15 19 19 C 1.38813 * 119.99506 * 15.57224 * 17 16 15 20 20 N 1.31611 * 120.00556 * 9.10072 * 19 17 16 21 21 Si 1.86808 * 119.99496 * 189.09506 * 19 17 16 22 22 H 1.48507 * 109.46674 * 90.00564 * 21 19 17 23 23 H 1.48503 * 109.46762 * 209.99882 * 21 19 17 24 24 H 1.48492 * 109.47473 * 330.00559 * 21 19 17 25 25 C 1.48143 * 104.32685 * 320.41318 * 16 15 13 26 26 C 1.52998 * 117.44507 * 135.75747 * 11 10 8 27 27 H 1.08999 * 119.53979 * 355.87840 * 26 11 10 28 28 H 1.08999 * 109.46947 * 299.99845 * 1 2 3 29 29 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46838 * 59.99797 * 1 2 3 31 31 H 1.08995 * 109.47093 * 120.00673 * 2 1 3 32 32 H 1.08999 * 109.46947 * 240.00155 * 2 1 3 33 33 H 1.08998 * 109.46930 * 60.00459 * 5 3 2 34 34 H 1.08998 * 109.46858 * 180.02562 * 5 3 2 35 35 H 1.08994 * 109.47254 * 300.00299 * 5 3 2 36 36 H 1.09002 * 109.47006 * 300.00121 * 7 6 3 37 37 H 1.09001 * 109.47326 * 59.99508 * 7 6 3 38 38 H 0.97004 * 119.99705 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.40381 * 205.97704 * 15 13 11 40 40 H 1.09008 * 110.40420 * 328.40240 * 15 13 11 41 41 H 0.96995 * 120.00738 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.41010 * 158.36598 * 25 16 15 43 43 H 1.08999 * 110.41332 * 280.80133 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1257 6 8 1.6621 2.0814 1.2211 7 6 1.4560 3.4902 1.1005 8 6 1.0627 4.0570 2.4403 9 8 0.9679 3.3262 3.4036 10 7 0.8155 5.3757 2.5679 11 6 0.4338 5.9268 3.8705 12 1 0.2132 5.1920 4.6448 13 6 -0.3783 7.2235 3.8770 14 1 -0.7266 7.6442 2.9337 15 6 -1.1669 7.5818 5.1550 16 7 -0.1975 8.3195 5.9979 17 6 -0.4295 9.4224 6.7759 18 1 0.3998 10.0106 7.1399 19 6 -1.7308 9.7841 7.0966 20 7 -2.7286 8.9757 6.8085 21 14 -2.0655 11.4183 7.9374 22 1 -2.2915 12.4664 6.9099 23 1 -3.2726 11.2963 8.7937 24 1 -0.8988 11.7914 8.7767 25 6 1.0799 7.5936 5.8084 26 6 1.1032 7.2313 4.3078 27 1 1.8808 7.6717 3.6838 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.8532 0.9571 -1.0571 34 1 3.9282 2.4720 -0.1252 35 1 3.9995 0.9053 0.7161 36 1 2.3769 3.9644 0.7611 37 1 0.6618 3.6808 0.3785 38 1 0.8911 5.9601 1.7973 39 1 -2.0185 8.2168 4.9105 40 1 -1.5000 6.6764 5.6624 41 1 -3.6378 9.2283 7.0329 42 1 1.9235 8.2375 6.0570 43 1 1.0978 6.6901 6.4179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114145627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:52 Heat of formation + Delta-G solvation = -30.461027 kcal Electronic energy + Delta-G solvation = -21867.060908 eV Core-core repulsion = 18528.072809 eV Total energy + Delta-G solvation = -3338.988099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95173 -38.82153 -37.90756 -34.47682 -34.02266 -32.67581 -30.44815 -30.14848 -28.00122 -27.14873 -25.50284 -23.93772 -21.97690 -21.32789 -20.57374 -20.18162 -19.30019 -17.37278 -17.15330 -16.79952 -16.22046 -15.97714 -14.87922 -14.70568 -14.51432 -14.13250 -13.80665 -13.57272 -13.42283 -13.21800 -12.98166 -12.75199 -12.35765 -12.21294 -11.90935 -11.68332 -11.51486 -11.48182 -11.28076 -10.99704 -10.85630 -10.83766 -10.39447 -10.20704 -10.14848 -9.88880 -9.76441 -9.69955 -9.19990 -8.73725 -8.34395 -6.87227 -5.79905 -3.14349 2.60642 2.68870 3.38224 3.43428 3.45708 3.76985 4.29497 4.42250 4.46907 4.64084 4.68967 4.79937 4.86373 4.98295 5.03968 5.15600 5.24107 5.32571 5.35763 5.36636 5.38380 5.55931 5.64034 5.71030 5.83175 5.83377 5.87382 5.90161 6.09423 6.14065 6.22382 6.52427 6.69815 6.74368 6.89864 6.92199 7.34637 7.52622 7.55941 7.71082 8.20150 8.27978 9.10638 9.73288 10.50316 11.34506 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047644 B = 0.002645 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.546160 B =10582.265427 C =10885.299641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.061 0.939 5 C -0.177 4.177 6 O -0.353 6.353 7 C 0.046 3.954 8 C 0.514 3.486 9 O -0.516 6.516 10 N -0.698 5.698 11 C 0.097 3.903 12 H 0.132 0.868 13 C -0.179 4.179 14 H 0.103 0.897 15 C 0.184 3.816 16 N -0.593 5.593 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.915 5.915 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.155 3.845 26 C -0.182 4.182 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.398 0.602 39 H 0.092 0.908 40 H 0.026 0.974 41 H 0.255 0.745 42 H 0.052 0.948 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 -12.710 -18.057 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.079 0.921 5 C -0.234 4.234 6 O -0.271 6.271 7 C -0.035 4.035 8 C 0.299 3.701 9 O -0.390 6.390 10 N -0.348 5.348 11 C -0.009 4.009 12 H 0.149 0.851 13 C -0.200 4.200 14 H 0.121 0.879 15 C 0.058 3.942 16 N -0.316 5.316 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.561 5.561 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.028 3.972 26 C -0.204 4.204 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.890 -13.220 -17.024 23.315 hybrid contribution -0.064 1.394 -0.431 1.460 sum 8.825 -11.827 -17.455 22.857 Atomic orbital electron populations 1.21752 0.95230 1.01755 1.02358 1.21624 0.96795 0.94585 1.02740 1.22240 0.94309 0.94271 0.86742 0.92073 1.22313 0.96075 1.02483 1.02566 1.88075 1.89359 1.17828 1.31869 1.22216 1.01363 0.84266 0.95605 1.20181 0.77577 0.82149 0.90175 1.90744 1.49859 1.58412 1.40034 1.45260 1.70070 1.07851 1.11634 1.21843 1.02504 0.90528 0.85979 0.85065 1.24656 0.95195 0.98122 1.02059 0.87885 1.21073 0.92597 0.95405 0.85091 1.45177 1.04161 1.31055 1.51250 1.19005 0.92348 1.00061 1.24110 0.90487 1.24909 0.95967 0.98943 1.00478 1.69889 0.98897 1.35401 1.51938 0.86098 0.77547 0.83100 0.78879 1.21525 1.21636 1.20523 1.21124 0.90868 0.95158 0.90012 1.24375 0.96539 0.99795 0.99677 0.87944 0.91603 0.92682 0.93121 0.90849 0.90758 0.91576 0.92441 0.91507 0.90483 0.90364 0.76797 0.89028 0.95587 0.93507 0.92971 0.95408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.12 -0.93 5.64 -26.73 -0.15 -1.08 16 3 C 0.08 0.68 2.72 -26.73 -0.07 0.61 16 4 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 5 C -0.18 -1.26 9.53 37.16 0.35 -0.90 16 6 O -0.35 -4.24 9.06 -55.14 -0.50 -4.74 16 7 C 0.05 0.46 6.23 36.01 0.22 0.68 16 8 C 0.51 7.39 7.91 -10.99 -0.09 7.31 16 9 O -0.52 -10.03 16.07 -14.36 -0.23 -10.26 16 10 N -0.70 -9.23 5.56 -53.80 -0.30 -9.53 16 11 C 0.10 1.65 5.97 -67.93 -0.41 1.25 16 12 H 0.13 2.58 7.40 -51.92 -0.38 2.20 16 13 C -0.18 -3.35 7.06 -89.22 -0.63 -3.98 16 14 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 15 C 0.18 4.45 5.70 -2.42 -0.01 4.44 16 16 N -0.59 -15.28 3.38 -168.86 -0.57 -15.85 16 17 C -0.23 -6.34 10.35 -15.06 -0.16 -6.49 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 19 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 20 N -0.92 -26.86 10.86 55.49 0.60 -26.26 16 21 Si 0.91 21.92 29.56 -169.99 -5.03 16.89 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.16 3.31 7.04 -2.41 -0.02 3.30 16 26 C -0.18 -3.25 7.06 -89.22 -0.63 -3.88 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 37 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.40 3.87 8.83 -40.82 -0.36 3.51 16 39 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 40 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -33.49 354.11 -9.33 -42.81 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.33 Total: 1.51 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.31 Total: 0.09 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.27 Total: -51.64 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.73 Total: -15.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.49 -9.33 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114145627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.351 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds