Wall clock time and date at job start Tue Mar 31 2020 02:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47441 * 2 1 4 4 C 1.53005 * 109.47006 * 119.99773 * 2 1 3 5 5 O 1.42900 * 109.47530 * 239.99184 * 2 1 3 6 6 C 1.42909 * 113.99333 * 60.00381 * 5 2 1 7 7 C 1.50706 * 109.46456 * 180.02562 * 6 5 2 8 8 O 1.21273 * 120.00290 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99379 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99410 * 179.97438 * 9 7 6 11 11 H 1.08994 * 115.52173 * 350.58432 * 10 9 7 12 12 C 1.52999 * 117.43773 * 205.16698 * 10 9 7 13 13 H 1.09003 * 119.54202 * 5.71970 * 12 10 9 14 14 C 1.54398 * 118.12247 * 160.81224 * 12 10 9 15 15 N 1.48148 * 104.61378 * 87.18850 * 14 12 10 16 16 C 1.36934 * 127.83203 * 140.41800 * 15 14 12 17 17 H 1.08003 * 119.99934 * 195.57826 * 16 15 14 18 18 C 1.38813 * 120.00449 * 15.57247 * 16 15 14 19 19 N 1.31628 * 119.99577 * 9.09707 * 18 16 15 20 20 Si 1.86798 * 120.00396 * 189.09753 * 18 16 15 21 21 H 1.48500 * 109.47016 * 89.99690 * 20 18 16 22 22 H 1.48500 * 109.47169 * 209.99970 * 20 18 16 23 23 H 1.48503 * 109.46917 * 330.00337 * 20 18 16 24 24 C 1.48136 * 104.32731 * 320.41859 * 15 14 12 25 25 C 1.53009 * 117.43713 * 136.00323 * 10 9 7 26 26 H 1.08998 * 119.53710 * 355.88154 * 25 10 9 27 27 H 1.09007 * 109.46646 * 60.00366 * 1 2 3 28 28 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47577 * 300.00738 * 1 2 3 30 30 H 1.08995 * 109.47338 * 59.99115 * 3 2 1 31 31 H 1.09000 * 109.47419 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46901 * 299.99477 * 3 2 1 33 33 H 1.08997 * 109.47016 * 59.99940 * 4 2 1 34 34 H 1.09000 * 109.47301 * 180.02562 * 4 2 1 35 35 H 1.09008 * 109.46860 * 300.00036 * 4 2 1 36 36 H 1.09001 * 109.46907 * 299.99743 * 6 5 2 37 37 H 1.08997 * 109.47324 * 60.00069 * 6 5 2 38 38 H 0.96998 * 119.99799 * 0.02562 * 9 7 6 39 39 H 1.08994 * 110.40503 * 205.97898 * 14 12 10 40 40 H 1.08997 * 110.39920 * 328.41016 * 14 12 10 41 41 H 0.97001 * 119.99112 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.40896 * 158.36917 * 24 15 14 43 43 H 1.09004 * 110.41165 * 280.68296 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6738 -1.1667 6 6 1.5847 -0.0775 -2.3950 7 6 2.1412 -0.8655 -3.5528 8 8 2.8312 -1.8412 -3.3464 9 7 1.8719 -0.4858 -4.8177 10 6 2.4133 -1.2515 -5.9433 11 1 3.1490 -2.0124 -5.6830 12 6 2.5996 -0.5159 -7.2718 13 1 2.4194 0.5580 -7.3214 14 6 3.5575 -1.1298 -8.3155 15 7 2.7149 -2.0727 -9.0873 16 6 2.7363 -2.3074 -10.4362 17 1 1.9139 -2.8253 -10.9073 18 6 3.8149 -1.8797 -11.1981 19 7 4.8936 -1.4113 -10.6070 20 14 3.7354 -1.9687 -13.0623 21 1 3.1748 -0.7009 -13.5949 22 1 5.1018 -2.1731 -13.6068 23 1 2.8663 -3.1028 -13.4671 24 6 1.8439 -2.7039 -8.0687 25 6 1.4701 -1.5524 -7.1099 26 1 0.4234 -1.2555 -7.0450 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 -1.7488 1.2493 34 1 3.1299 -0.7209 1.2496 35 1 1.6765 -0.2073 2.1393 36 1 0.4959 -0.0791 -2.4447 37 1 1.9492 0.9486 -2.4448 38 1 1.3203 0.2948 -4.9827 39 1 3.9556 -0.3535 -8.9689 40 1 4.3684 -1.6632 -7.8196 41 1 5.6474 -1.1127 -11.1395 42 1 0.9492 -3.1153 -8.5359 43 1 2.3865 -3.4847 -7.5357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114166720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:52 Heat of formation + Delta-G solvation = -47.174135 kcal Electronic energy + Delta-G solvation = -22045.616559 eV Core-core repulsion = 18705.903726 eV Total energy + Delta-G solvation = -3339.712834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24621 -40.23427 -39.26608 -36.10023 -34.46233 -34.29397 -32.22559 -29.44887 -28.93192 -28.26371 -28.05475 -27.25422 -23.66150 -21.98508 -21.72583 -20.90999 -20.87361 -18.88925 -18.34790 -17.86750 -17.09295 -16.97929 -16.69783 -16.06946 -15.55402 -15.48872 -15.01209 -14.66081 -14.52884 -14.45328 -14.11851 -13.77562 -13.36223 -13.25081 -13.10980 -12.90403 -12.84270 -12.73639 -12.71366 -12.63343 -12.20987 -12.13644 -12.03463 -11.88655 -11.67963 -11.57071 -10.94840 -10.82173 -10.69723 -10.56744 -9.73670 -8.93919 -7.92538 -5.29864 1.46788 1.47267 1.48936 1.58168 1.66053 2.47734 2.83245 2.92588 3.28514 3.56199 3.67944 3.82084 3.91423 3.92759 3.97713 4.10542 4.12746 4.16772 4.28455 4.37193 4.51165 4.69043 4.70011 4.78837 4.83934 4.84108 4.88683 4.96894 4.97301 4.97912 5.19258 5.26967 5.35597 5.39970 5.39993 5.43707 5.52052 5.63372 6.15462 6.19875 6.54033 6.99132 7.20460 7.65964 8.44472 9.21466 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.053882 B = 0.002664 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.526243 B =10509.550316 C =10605.400769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 C -0.178 4.178 4 C -0.139 4.139 5 O -0.389 6.389 6 C 0.048 3.952 7 C 0.511 3.489 8 O -0.576 6.576 9 N -0.678 5.678 10 C 0.114 3.886 11 H 0.100 0.900 12 C -0.175 4.175 13 H 0.132 0.868 14 C 0.187 3.813 15 N -0.617 5.617 16 C -0.241 4.241 17 H 0.084 0.916 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.984 3.016 21 H -0.282 1.282 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.147 3.853 25 C -0.163 4.163 26 H 0.140 0.860 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.421 0.579 39 H 0.061 0.939 40 H -0.007 1.007 41 H 0.250 0.750 42 H 0.065 0.935 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.340 9.494 21.798 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.056 3.944 3 C -0.236 4.236 4 C -0.197 4.197 5 O -0.308 6.308 6 C -0.031 4.031 7 C 0.298 3.702 8 O -0.454 6.454 9 N -0.330 5.330 10 C 0.006 3.994 11 H 0.118 0.882 12 C -0.196 4.196 13 H 0.150 0.850 14 C 0.061 3.939 15 N -0.341 5.341 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.811 3.189 21 H -0.209 1.209 22 H -0.222 1.222 23 H -0.192 1.192 24 C 0.021 3.979 25 C -0.184 4.184 26 H 0.157 0.843 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.259 0.741 39 H 0.079 0.921 40 H 0.011 0.989 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -11.613 8.644 21.766 26.140 hybrid contribution 0.290 0.192 -1.262 1.309 sum -11.323 8.836 20.503 25.033 Atomic orbital electron populations 1.22441 0.94073 1.02864 1.04106 1.21873 0.94482 0.92840 0.85216 1.22450 1.01768 0.95247 1.04099 1.21807 1.01491 1.00779 0.95575 1.88087 1.75047 1.54592 1.13113 1.22278 1.01201 0.96910 0.82718 1.21096 0.79863 0.84720 0.84494 1.90720 1.39758 1.29487 1.85468 1.45005 1.53032 1.31574 1.03430 1.21342 0.99120 0.97483 0.81409 0.88249 1.24320 1.01195 0.98424 0.95692 0.85035 1.20818 0.90383 0.92397 0.90331 1.45485 1.41771 1.44111 1.02708 1.19416 1.02190 1.33338 0.82045 0.89846 1.25802 0.94826 1.02035 1.03106 1.70111 1.05305 1.48965 1.35302 0.85004 0.76514 0.78189 0.79151 1.20870 1.22223 1.19166 1.21274 0.94259 0.92973 0.89401 1.24268 0.96934 0.98649 0.98522 0.84250 0.91022 0.92590 0.89425 0.89399 0.92735 0.91055 0.92753 0.92871 0.88534 0.87001 0.87248 0.74056 0.92072 0.98942 0.94069 0.91651 0.96668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.25 71.98 0.59 -1.27 16 2 C 0.09 1.41 1.14 -10.79 -0.01 1.40 16 3 C -0.18 -1.95 8.25 71.98 0.59 -1.36 16 4 C -0.14 -2.00 8.84 71.98 0.64 -1.37 16 5 O -0.39 -9.14 9.52 -129.94 -1.24 -10.38 16 6 C 0.05 0.86 5.62 71.24 0.40 1.26 16 7 C 0.51 14.20 7.91 87.66 0.69 14.89 16 8 O -0.58 -23.01 16.06 16.03 0.26 -22.75 16 9 N -0.68 -16.44 5.56 -442.52 -2.46 -18.90 16 10 C 0.11 3.79 5.98 44.99 0.27 4.06 16 11 H 0.10 4.07 7.40 -2.39 -0.02 4.05 16 12 C -0.18 -6.41 7.05 -9.93 -0.07 -6.48 16 13 H 0.13 4.09 8.14 -2.39 -0.02 4.07 16 14 C 0.19 9.36 5.70 86.54 0.49 9.86 16 15 N -0.62 -32.41 3.38 -688.07 -2.32 -34.74 16 16 C -0.24 -13.63 10.35 84.03 0.87 -12.76 16 17 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 18 C -0.06 -3.67 5.40 84.86 0.46 -3.21 16 19 N -0.95 -57.74 10.86 21.65 0.24 -57.51 16 20 Si 0.98 45.58 29.56 68.60 2.03 47.61 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C 0.15 6.25 7.04 86.55 0.61 6.86 16 25 C -0.16 -5.50 7.05 -9.91 -0.07 -5.57 16 26 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 27 H 0.07 0.58 6.54 -2.38 -0.02 0.56 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.61 6.54 -2.38 -0.02 0.60 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.11 1.31 6.42 -2.39 -0.02 1.29 16 37 H 0.11 1.34 6.42 -2.39 -0.02 1.33 16 38 H 0.42 6.49 8.83 -92.71 -0.82 5.67 16 39 H 0.06 3.41 6.51 -2.39 -0.02 3.40 16 40 H -0.01 -0.41 8.14 -2.39 -0.02 -0.42 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -77.54 347.37 2.14 -75.40 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.18 Total: 14.95 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.47 Total: 6.32 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.55 Total: -111.14 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.98 Total: -33.13 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -77.54 2.14 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114166720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.226 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds