Wall clock time and date at job start Tue Mar 31 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 119.99549 * 2 1 4 4 O 1.42908 * 109.46809 * 134.99817 * 3 2 1 5 5 C 1.42896 * 113.99901 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47532 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99579 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00454 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00187 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.49733 * 325.07159 * 9 8 6 11 11 C 1.53042 * 109.49969 * 205.00162 * 9 8 6 12 12 C 1.53033 * 109.54104 * 301.41994 * 11 9 8 13 13 C 1.53195 * 109.33986 * 298.61716 * 12 11 9 14 14 H 1.08999 * 109.58479 * 294.86815 * 13 12 11 15 15 C 1.52997 * 109.59164 * 174.43830 * 13 12 11 16 16 N 1.46997 * 108.73703 * 54.62112 * 13 12 11 17 17 C 1.36934 * 120.61385 * 126.41029 * 16 13 12 18 18 H 1.08000 * 120.00387 * 330.19400 * 17 16 13 19 19 C 1.38822 * 120.00104 * 150.18572 * 17 16 13 20 20 N 1.31617 * 119.99903 * 344.48229 * 19 17 16 21 21 Si 1.86792 * 119.99860 * 164.47838 * 19 17 16 22 22 H 1.48498 * 109.47346 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47188 * 120.00576 * 21 19 17 24 24 H 1.48504 * 109.47082 * 240.00190 * 21 19 17 25 25 C 1.46928 * 118.75717 * 306.40972 * 16 13 12 26 26 H 1.07993 * 120.00448 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99657 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00650 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46962 * 15.00315 * 3 2 1 30 30 H 1.08998 * 109.47207 * 254.99458 * 3 2 1 31 31 H 1.08997 * 109.47245 * 59.99890 * 5 4 3 32 32 H 1.09010 * 109.47185 * 300.00384 * 5 4 3 33 33 H 0.96998 * 119.99998 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.45837 * 181.39416 * 11 9 8 35 35 H 1.09006 * 109.44372 * 61.43587 * 11 9 8 36 36 H 1.08997 * 109.49951 * 58.57958 * 12 11 9 37 37 H 1.08994 * 109.49792 * 178.64925 * 12 11 9 38 38 H 1.09009 * 109.47032 * 59.99729 * 15 13 12 39 39 H 1.08991 * 109.47402 * 179.97438 * 15 13 12 40 40 H 1.09005 * 109.46947 * 300.00659 * 15 13 12 41 41 H 0.96994 * 119.99982 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.58555 * 293.82430 * 25 16 13 43 43 H 1.08999 * 109.70464 * 173.46252 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9075 2.4354 1.0330 6 6 4.9939 2.2571 2.0621 7 8 5.0896 1.2106 2.6676 8 7 5.8590 3.2603 2.3096 9 6 6.9147 3.0871 3.3105 10 1 6.5427 2.4704 4.1286 11 6 7.3346 4.4554 3.8522 12 6 7.8256 5.3337 2.6991 13 6 9.0462 4.6778 2.0459 14 1 9.8714 4.6515 2.7574 15 6 9.4575 5.4777 0.8082 16 7 8.6913 3.3067 1.6522 17 6 8.8853 2.8782 0.3662 18 1 8.8295 3.5813 -0.4516 19 6 9.1538 1.5398 0.1136 20 7 9.5228 0.7458 1.0963 21 14 8.9911 0.8658 -1.6209 22 1 8.5656 1.9542 -2.5371 23 1 10.3010 0.3272 -2.0675 24 1 7.9781 -0.2199 -1.6371 25 6 8.1247 2.4049 2.6643 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3853 2.1161 0.2660 30 1 2.4755 1.4869 -0.9926 31 1 3.2675 3.2695 1.3206 32 1 4.3578 2.6411 0.0618 33 1 5.7822 4.0974 1.8257 34 1 8.1372 4.3277 4.5786 35 1 6.4812 4.9324 4.3342 36 1 7.0315 5.4415 1.9603 37 1 8.1018 6.3160 3.0822 38 1 9.7075 6.4975 1.1012 39 1 10.3261 5.0098 0.3453 40 1 8.6318 5.4963 0.0967 41 1 9.7101 -0.1894 0.9199 42 1 8.8749 2.1934 3.4262 43 1 7.8105 1.4740 2.1925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131946790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:37 Heat of formation + Delta-G solvation = -61.863625 kcal Electronic energy + Delta-G solvation = -23332.196458 eV Core-core repulsion = 19991.846640 eV Total energy + Delta-G solvation = -3340.349818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03826 -39.46464 -38.47706 -35.75227 -34.77366 -34.49094 -32.41159 -31.74125 -29.28622 -27.75704 -26.79802 -26.21533 -23.88232 -22.36792 -21.86202 -20.90273 -20.36603 -18.48295 -18.13312 -17.74648 -17.36690 -16.98710 -16.42101 -16.12243 -15.84619 -15.47362 -15.29312 -14.87954 -14.79370 -14.41541 -14.02890 -13.98469 -13.67562 -13.16792 -13.10659 -12.96803 -12.85882 -12.62694 -12.51678 -12.40476 -12.09501 -12.03798 -11.90147 -11.55427 -11.20593 -11.03816 -10.98352 -10.75340 -10.52523 -10.27095 -9.93120 -8.56525 -7.81617 -5.27408 1.19119 1.39955 1.42932 1.51308 1.70568 2.08398 2.50633 3.15084 3.35011 3.64260 3.81435 4.04615 4.07546 4.12824 4.15369 4.19328 4.22776 4.31377 4.45447 4.51722 4.59236 4.67427 4.75923 4.84886 4.96644 4.98349 5.06563 5.10866 5.14550 5.29743 5.34899 5.59867 5.63387 5.64102 5.67671 5.71149 5.75168 5.76322 6.12149 6.45120 6.73024 7.19306 7.41549 7.93919 8.45210 9.23863 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.005770 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.781959 B = 4851.300721 C = 6033.370295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.182 4.182 3 C 0.082 3.918 4 O -0.399 6.399 5 C 0.051 3.949 6 C 0.502 3.498 7 O -0.586 6.586 8 N -0.687 5.687 9 C 0.129 3.871 10 H 0.060 0.940 11 C -0.109 4.109 12 C -0.118 4.118 13 C 0.152 3.848 14 H 0.011 0.989 15 C -0.128 4.128 16 N -0.595 5.595 17 C -0.234 4.234 18 H 0.081 0.919 19 C -0.057 4.057 20 N -0.939 5.939 21 Si 0.948 3.052 22 H -0.254 1.254 23 H -0.296 1.296 24 H -0.307 1.307 25 C 0.172 3.828 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.410 0.590 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.054 0.946 41 H 0.241 0.759 42 H -0.007 1.007 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 11.896 -0.796 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.200 4.200 3 C 0.006 3.994 4 O -0.319 6.319 5 C -0.028 4.028 6 C 0.288 3.712 7 O -0.466 6.466 8 N -0.339 5.339 9 C 0.023 3.977 10 H 0.078 0.922 11 C -0.147 4.147 12 C -0.157 4.157 13 C 0.047 3.953 14 H 0.028 0.972 15 C -0.185 4.185 16 N -0.318 5.318 17 C -0.365 4.365 18 H 0.098 0.902 19 C -0.252 4.252 20 N -0.586 5.586 21 Si 0.778 3.222 22 H -0.177 1.177 23 H -0.223 1.223 24 H -0.235 1.235 25 C 0.045 3.955 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.248 0.752 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.011 0.989 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.473 10.886 -0.290 18.112 hybrid contribution 0.603 -1.010 -1.064 1.586 sum -13.870 9.876 -1.354 17.080 Atomic orbital electron populations 1.24052 0.94530 1.03732 0.97318 1.22779 0.96608 0.97834 1.02821 1.21828 0.88332 0.96953 0.92256 1.88016 1.45592 1.36665 1.61592 1.22283 0.92632 0.89464 0.98421 1.20917 0.83216 0.83465 0.83575 1.90677 1.74740 1.28844 1.52336 1.45584 1.29787 1.16992 1.41585 1.21451 0.87781 0.98567 0.89913 0.92151 1.21657 1.01692 0.93090 0.98245 1.21951 0.97976 0.98609 0.97140 1.20813 0.94582 0.84617 0.95288 0.97171 1.21716 1.00658 0.98762 0.97366 1.44291 1.71515 1.09069 1.06972 1.19484 1.39341 0.92534 0.85143 0.90182 1.25788 1.00686 0.99037 0.99651 1.70175 1.51040 1.04901 1.32529 0.85471 0.76429 0.78418 0.81875 1.17733 1.22327 1.23460 1.20813 0.90935 0.93485 0.90247 0.86412 0.86590 0.88408 0.89963 0.91358 0.86258 0.88843 0.75195 0.91157 0.89354 0.91335 0.89096 0.90577 0.94829 0.92667 0.94990 0.98900 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 14.31 67.79 0.97 -1.67 16 2 C -0.18 -4.17 9.89 25.65 0.25 -3.92 16 3 C 0.08 1.88 6.35 71.24 0.45 2.33 16 4 O -0.40 -13.31 9.86 -129.94 -1.28 -14.59 16 5 C 0.05 1.45 6.42 71.24 0.46 1.90 16 6 C 0.50 19.38 7.87 87.66 0.69 20.07 16 7 O -0.59 -29.54 16.16 16.01 0.26 -29.28 16 8 N -0.69 -23.32 4.91 -442.17 -2.17 -25.50 16 9 C 0.13 4.92 2.81 45.07 0.13 5.05 16 10 H 0.06 2.48 7.58 -2.39 -0.02 2.47 16 11 C -0.11 -3.05 5.59 30.62 0.17 -2.88 16 12 C -0.12 -3.13 5.20 30.67 0.16 -2.97 16 13 C 0.15 5.59 3.50 44.96 0.16 5.75 16 14 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 15 C -0.13 -4.14 7.95 71.98 0.57 -3.56 16 16 N -0.59 -28.16 2.90 -675.05 -1.96 -30.12 16 17 C -0.23 -12.32 8.58 84.04 0.72 -11.60 16 18 H 0.08 3.97 6.23 -2.91 -0.02 3.95 16 19 C -0.06 -3.26 4.94 84.86 0.42 -2.84 16 20 N -0.94 -59.00 11.23 21.65 0.24 -58.75 16 21 Si 0.95 46.51 29.58 68.60 2.03 48.54 16 22 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 24 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 25 C 0.17 8.62 4.88 86.36 0.42 9.04 16 26 H 0.12 1.44 7.90 -2.91 -0.02 1.42 16 27 H 0.12 1.59 8.06 -2.91 -0.02 1.57 16 28 H 0.10 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.08 1.38 7.86 -2.39 -0.02 1.36 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.41 11.08 6.77 -92.71 -0.63 10.45 16 34 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.09 1.93 8.14 -2.38 -0.02 1.92 16 36 H 0.07 1.67 6.40 -2.39 -0.02 1.66 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.03 1.25 7.67 -2.39 -0.02 1.23 16 40 H 0.05 1.75 7.40 -2.38 -0.02 1.73 16 41 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.04 2.59 6.15 -2.39 -0.01 2.58 16 Total: -1.00 -78.81 345.94 3.05 -75.77 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.36 Total: 19.24 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.57 Total: 14.70 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -3.89 Total: -114.37 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.02 Total: -43.87 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.81 3.05 -75.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131946790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.905 kcal (2) G-P(sol) polarization free energy of solvation -78.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds