Wall clock time and date at job start Tue Mar 31 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50709 * 119.99915 * 2 1 4 4 O 1.42900 * 109.47055 * 134.99767 * 3 2 1 5 5 C 1.42895 * 114.00311 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47519 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99466 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99797 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99816 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.49838 * 34.93748 * 9 8 6 11 11 C 1.53047 * 109.49860 * 155.00174 * 9 8 6 12 12 C 1.53039 * 109.53709 * 181.35084 * 11 9 8 13 13 C 1.53194 * 109.31339 * 298.63181 * 12 11 9 14 14 H 1.08996 * 109.70456 * 294.78061 * 13 12 11 15 15 C 1.52994 * 109.58729 * 174.42038 * 13 12 11 16 16 N 1.46929 * 108.77338 * 54.63818 * 13 12 11 17 17 C 1.36938 * 120.63009 * 126.37152 * 16 13 12 18 18 H 1.07998 * 119.99922 * 330.39045 * 17 16 13 19 19 C 1.38818 * 120.00116 * 150.39616 * 17 16 13 20 20 N 1.31627 * 119.99578 * 347.42205 * 19 17 16 21 21 Si 1.86798 * 120.00191 * 167.70155 * 19 17 16 22 22 H 1.48494 * 109.47275 * 89.99702 * 21 19 17 23 23 H 1.48503 * 109.46850 * 209.99868 * 21 19 17 24 24 H 1.48498 * 109.46661 * 329.99635 * 21 19 17 25 25 C 1.46929 * 118.73866 * 306.64350 * 16 13 12 26 26 H 1.08000 * 119.99973 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99936 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99936 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47287 * 15.00011 * 3 2 1 30 30 H 1.08992 * 109.46837 * 254.99635 * 3 2 1 31 31 H 1.09002 * 109.46924 * 59.99963 * 5 4 3 32 32 H 1.08998 * 109.47216 * 300.00306 * 5 4 3 33 33 H 0.97001 * 120.00808 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.45658 * 61.33213 * 11 9 8 35 35 H 1.08996 * 109.45422 * 301.36940 * 11 9 8 36 36 H 1.09000 * 109.49989 * 178.68297 * 12 11 9 37 37 H 1.09006 * 109.50021 * 58.58172 * 12 11 9 38 38 H 1.08996 * 109.47883 * 300.71128 * 15 13 12 39 39 H 1.09002 * 109.47183 * 60.71486 * 15 13 12 40 40 H 1.09007 * 109.47214 * 180.70709 * 15 13 12 41 41 H 0.96997 * 119.99742 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58872 * 173.15048 * 25 16 13 43 43 H 1.09003 * 109.58399 * 293.56745 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4349 1.0321 6 6 4.9947 2.2565 2.0614 7 8 5.0897 1.2103 2.6675 8 7 5.8604 3.2594 2.3081 9 6 6.9161 3.0861 3.3090 10 1 7.2640 2.0533 3.2958 11 6 8.0833 4.0225 2.9878 12 6 9.2006 3.8181 4.0134 13 6 8.6750 4.1624 5.4106 14 1 8.4335 5.2241 5.4610 15 6 9.7409 3.8287 6.4562 16 7 7.4657 3.3692 5.6696 17 6 7.3668 2.5951 6.7948 18 1 8.2556 2.1714 7.2386 19 6 6.1241 2.3548 7.3650 20 7 5.0786 3.0584 6.9850 21 14 5.9373 1.0384 8.6772 22 1 6.1593 1.6397 10.0167 23 1 4.5688 0.4656 8.6122 24 1 6.9354 -0.0364 8.4454 25 6 6.3669 3.4178 4.6954 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3856 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 3.2689 3.2696 1.3193 32 1 4.3587 2.6396 0.0609 33 1 5.7842 4.0963 1.8236 34 1 7.7404 5.0564 3.0256 35 1 8.4617 3.8017 1.9897 36 1 10.0410 4.4683 3.7704 37 1 9.5270 2.7782 3.9936 38 1 9.9847 2.7678 6.4008 39 1 10.6372 4.4180 6.2623 40 1 9.3604 4.0626 7.4505 41 1 4.2104 2.8908 7.3837 42 1 5.6038 2.6890 4.9686 43 1 5.9327 4.4175 4.6839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131946791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:39 Heat of formation + Delta-G solvation = -40.472710 kcal Electronic energy + Delta-G solvation = -22762.331764 eV Core-core repulsion = 19422.909526 eV Total energy + Delta-G solvation = -3339.422238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.55451 -38.09182 -37.21689 -34.35092 -33.92935 -32.77759 -30.90905 -29.82699 -28.26429 -26.07065 -25.41553 -24.64555 -22.23123 -20.88754 -20.25914 -19.87704 -19.19157 -17.12241 -16.70005 -16.39458 -16.23801 -15.36620 -15.31434 -14.65245 -14.31487 -13.92329 -13.74477 -13.42418 -13.32942 -13.19573 -12.70848 -12.36167 -12.20871 -12.16081 -11.83858 -11.38973 -11.12319 -11.08870 -10.84328 -10.65840 -10.48036 -10.36698 -10.22660 -10.05706 -9.91688 -9.70082 -9.48976 -9.41820 -9.22109 -8.49699 -8.36964 -6.55526 -5.68633 -3.14916 1.96347 3.04194 3.15798 3.45630 3.53290 3.55022 4.13021 4.57991 4.79814 4.93062 5.01514 5.10219 5.14770 5.25323 5.34403 5.38000 5.40887 5.54086 5.61071 5.67583 5.71240 6.00151 6.13233 6.29543 6.33477 6.38606 6.41814 6.45332 6.48308 6.54554 6.65468 6.78523 6.94038 7.03681 7.08432 7.16032 7.38351 7.81983 7.89607 7.97299 8.55970 8.70604 9.30014 9.93795 10.48731 11.39282 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015533 B = 0.004639 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.150379 B = 6034.515860 C = 7507.681362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.086 3.914 4 O -0.357 6.357 5 C 0.046 3.954 6 C 0.508 3.492 7 O -0.511 6.511 8 N -0.720 5.720 9 C 0.118 3.882 10 H 0.081 0.919 11 C -0.115 4.115 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.025 0.975 15 C -0.137 4.137 16 N -0.584 5.584 17 C -0.253 4.253 18 H 0.070 0.930 19 C 0.006 3.994 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.166 3.834 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.392 0.608 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.253 0.747 42 H 0.097 0.903 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 2.654 -15.586 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C 0.009 3.991 4 O -0.275 6.275 5 C -0.035 4.035 6 C 0.292 3.708 7 O -0.384 6.384 8 N -0.373 5.373 9 C 0.013 3.987 10 H 0.099 0.901 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.307 5.307 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.193 4.193 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.040 3.960 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -1.946 1.683 -14.927 15.147 hybrid contribution -0.393 0.077 0.178 0.439 sum -2.339 1.759 -14.748 15.036 Atomic orbital electron populations 1.23818 0.95507 1.02229 1.00389 1.22740 0.95633 0.98294 0.99872 1.21599 0.88997 0.96147 0.92314 1.88080 1.44123 1.35100 1.60232 1.22238 0.93468 0.89116 0.98648 1.20066 0.82512 0.84508 0.83689 1.90774 1.71333 1.27091 1.49218 1.45952 1.32612 1.16458 1.42284 1.21910 0.86188 1.00266 0.90328 0.90072 1.21675 0.96124 0.99276 0.98294 1.22052 0.96411 1.01368 0.96789 1.20488 0.88230 0.93905 0.91548 0.95759 1.21806 0.96674 1.00805 1.00134 1.44009 1.14173 1.51052 1.21499 1.19137 0.93149 1.23170 1.02751 0.91267 1.25101 0.96871 0.99022 0.98269 1.69970 0.99837 1.40040 1.44782 0.86305 0.77255 0.81817 0.81458 1.21486 1.21577 1.20411 1.21030 0.91444 0.99946 0.83624 0.87789 0.88445 0.86419 0.92621 0.92302 0.90386 0.90723 0.77560 0.92290 0.93114 0.92695 0.92068 0.92807 0.94365 0.91982 0.93731 0.88465 0.96639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 14.31 29.01 0.42 -1.23 16 2 C -0.15 -1.59 9.89 -36.02 -0.36 -1.95 16 3 C 0.09 0.94 6.35 36.01 0.23 1.17 16 4 O -0.36 -5.55 9.86 -55.14 -0.54 -6.10 16 5 C 0.05 0.60 6.42 36.01 0.23 0.83 16 6 C 0.51 9.22 7.87 -10.99 -0.09 9.14 16 7 O -0.51 -12.25 16.16 -14.35 -0.23 -12.49 16 8 N -0.72 -11.70 5.08 -53.90 -0.27 -11.97 16 9 C 0.12 2.33 2.59 -68.03 -0.18 2.15 16 10 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 11 C -0.12 -1.86 5.36 -26.69 -0.14 -2.00 16 12 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 13 C 0.16 3.41 3.50 -67.60 -0.24 3.17 16 14 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 15 C -0.14 -2.59 7.95 37.15 0.30 -2.29 16 16 N -0.58 -14.76 3.00 -165.03 -0.49 -15.26 16 17 C -0.25 -7.03 8.59 -15.06 -0.13 -7.16 16 18 H 0.07 1.87 6.21 -52.49 -0.33 1.55 16 19 C 0.01 0.18 5.01 -17.42 -0.09 0.09 16 20 N -0.90 -27.21 11.05 55.49 0.61 -26.59 16 21 Si 0.90 22.83 29.57 -169.99 -5.03 17.81 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 25 C 0.17 4.10 4.82 -3.93 -0.02 4.08 16 26 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 27 H 0.10 0.76 7.90 -52.49 -0.41 0.35 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.06 0.53 7.86 -51.93 -0.41 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.39 4.71 8.60 -40.82 -0.35 4.36 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.10 2.85 6.05 -51.93 -0.31 2.54 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -34.83 349.18 -8.10 -42.93 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.20 Total: 2.73 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.21 Total: 3.68 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.16 Total: -53.82 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.78 Total: -18.59 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.83 -8.10 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131946791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.456 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds