Wall clock time and date at job start Tue Mar 31 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00319 * 2 1 4 4 O 1.42891 * 109.47358 * 134.99649 * 3 2 1 5 5 C 1.42899 * 113.99858 * 180.02562 * 4 3 2 6 6 C 1.50710 * 109.46966 * 180.02562 * 5 4 3 7 7 O 1.21271 * 119.99850 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99870 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00165 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.49364 * 324.93617 * 9 8 6 11 11 C 1.53037 * 109.49839 * 204.83834 * 9 8 6 12 12 C 1.53041 * 109.53563 * 178.68347 * 11 9 8 13 13 C 1.53188 * 109.31294 * 61.36543 * 12 11 9 14 14 H 1.08999 * 109.58600 * 65.29459 * 13 12 11 15 15 C 1.53003 * 109.58473 * 185.57490 * 13 12 11 16 16 N 1.46927 * 108.77503 * 305.36209 * 13 12 11 17 17 C 1.36934 * 120.62973 * 233.58195 * 16 13 12 18 18 H 1.08000 * 120.00146 * 29.03251 * 17 16 13 19 19 C 1.38811 * 120.00091 * 209.01980 * 17 16 13 20 20 N 1.31622 * 119.99871 * 15.04115 * 19 17 16 21 21 Si 1.86794 * 120.00350 * 195.03511 * 19 17 16 22 22 H 1.48495 * 109.47228 * 60.00095 * 21 19 17 23 23 H 1.48501 * 109.47478 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47023 * 300.00341 * 21 19 17 25 25 C 1.46921 * 118.73729 * 53.61449 * 16 13 12 26 26 H 1.07998 * 120.00140 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00008 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00008 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46874 * 14.99442 * 3 2 1 30 30 H 1.09001 * 109.46594 * 254.99745 * 3 2 1 31 31 H 1.08997 * 109.47584 * 60.00048 * 5 4 3 32 32 H 1.09001 * 109.46981 * 299.99561 * 5 4 3 33 33 H 0.97003 * 119.99825 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.45851 * 58.66757 * 11 9 8 35 35 H 1.08995 * 109.45808 * 298.70198 * 11 9 8 36 36 H 1.09004 * 109.49973 * 301.41061 * 12 11 9 37 37 H 1.09004 * 109.50028 * 181.31793 * 12 11 9 38 38 H 1.09009 * 109.46959 * 60.00428 * 15 13 12 39 39 H 1.09002 * 109.47114 * 179.97438 * 15 13 12 40 40 H 1.08996 * 109.47503 * 299.99947 * 15 13 12 41 41 H 0.97003 * 120.00166 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.59219 * 66.17222 * 25 16 13 43 43 H 1.08997 * 109.58947 * 186.60165 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4353 1.0328 6 6 4.9941 2.2568 2.0620 7 8 5.0896 1.2104 2.6675 8 7 5.8593 3.2601 2.3094 9 6 6.9150 3.0868 3.3103 10 1 6.5421 2.4722 4.1296 11 6 7.3378 4.4555 3.8489 12 6 8.4175 4.2734 4.9181 13 6 9.6429 3.6008 4.2914 14 1 10.0860 4.2663 3.5505 15 6 10.6707 3.2897 5.3812 16 7 9.2177 2.3520 3.6444 17 6 9.8303 1.1655 3.9477 18 1 10.2628 1.0156 4.9259 19 6 9.8950 0.1552 2.9980 20 7 9.6443 0.4231 1.7340 21 14 10.3381 -1.5846 3.5138 22 1 9.3401 -2.0790 4.4960 23 1 10.3398 -2.4694 2.3211 24 1 11.6872 -1.5885 4.1343 25 6 8.1234 2.4008 2.6653 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3856 2.1161 0.2659 30 1 2.4756 1.4866 -0.9927 31 1 3.2678 3.2695 1.3204 32 1 4.3580 2.6407 0.0616 33 1 5.7830 4.0969 1.8248 34 1 6.4741 4.9561 4.2866 35 1 7.7332 5.0604 3.0329 36 1 8.0309 3.6479 5.7228 37 1 8.7015 5.2469 5.3179 38 1 10.2273 2.6202 6.1184 39 1 11.5415 2.8109 4.9334 40 1 10.9754 4.2159 5.8684 41 1 9.6899 -0.2828 1.0702 42 1 8.4410 2.9674 1.7900 43 1 7.8529 1.3874 2.3687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131946792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:41 Heat of formation + Delta-G solvation = -40.454406 kcal Electronic energy + Delta-G solvation = -22754.180575 eV Core-core repulsion = 19414.759130 eV Total energy + Delta-G solvation = -3339.421444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.55537 -38.09180 -37.22081 -34.35246 -33.94230 -32.77980 -30.90563 -29.83248 -28.26986 -26.06687 -25.41403 -24.64768 -22.23596 -20.89166 -20.26520 -19.88664 -19.19134 -17.12074 -16.71410 -16.42609 -16.21055 -15.43042 -15.17175 -14.82959 -14.21634 -13.79786 -13.77603 -13.65673 -13.33867 -13.04493 -12.75816 -12.35080 -12.24919 -12.15374 -11.82101 -11.40531 -11.13202 -11.09197 -10.84878 -10.64927 -10.48415 -10.36922 -10.23459 -10.07275 -9.92782 -9.69701 -9.50042 -9.42309 -9.22517 -8.49576 -8.36493 -6.57237 -5.69223 -3.13799 1.94968 3.03729 3.15110 3.46646 3.52937 3.55211 4.12398 4.58294 4.78628 4.91538 5.00711 5.10243 5.15164 5.26794 5.30943 5.37535 5.40559 5.53403 5.60801 5.66636 5.70901 5.99787 6.12823 6.29460 6.33090 6.37785 6.41636 6.43727 6.48089 6.53392 6.65198 6.77637 6.93617 7.03225 7.08195 7.15664 7.37091 7.79576 7.89436 7.96743 8.54886 8.70099 9.29401 9.93742 10.48557 11.38874 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.004553 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.893358 B = 6148.191387 C = 7545.041687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.086 3.914 4 O -0.357 6.357 5 C 0.045 3.955 6 C 0.508 3.492 7 O -0.510 6.510 8 N -0.721 5.721 9 C 0.118 3.882 10 H 0.082 0.918 11 C -0.115 4.115 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.025 0.975 15 C -0.137 4.137 16 N -0.583 5.583 17 C -0.254 4.254 18 H 0.070 0.930 19 C 0.007 3.993 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.167 3.833 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.392 0.608 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 9.131 -2.743 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C 0.009 3.991 4 O -0.275 6.275 5 C -0.035 4.035 6 C 0.292 3.708 7 O -0.384 6.384 8 N -0.373 5.373 9 C 0.013 3.987 10 H 0.100 0.900 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.307 5.307 17 C -0.384 4.384 18 H 0.088 0.912 19 C -0.192 4.192 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.040 3.960 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.224 0.776 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.896 8.046 -2.317 15.375 hybrid contribution 0.060 -0.217 -0.382 0.443 sum -12.836 7.829 -2.698 15.275 Atomic orbital electron populations 1.23797 0.95472 1.02151 1.00780 1.22770 0.95615 0.98427 0.99522 1.21600 0.88896 0.95999 0.92589 1.88079 1.44151 1.35169 1.60129 1.22241 0.93292 0.88792 0.99149 1.20070 0.82415 0.84464 0.83836 1.90774 1.72101 1.26311 1.49221 1.45960 1.32012 1.16551 1.42810 1.21995 0.88767 0.96808 0.91129 0.90033 1.21674 0.98320 0.96409 0.98958 1.22052 0.97031 0.99741 0.97794 1.20484 0.91633 0.88916 0.93138 0.95791 1.21806 0.99683 0.99479 0.98442 1.44016 1.35984 1.02450 1.48230 1.19101 1.32568 0.90607 0.96084 0.91245 1.25065 1.00200 0.99176 0.94784 1.69980 1.52940 1.31765 0.99848 0.86389 0.78226 0.84816 0.77455 1.20891 1.21681 1.20966 1.21100 0.84003 1.01189 0.89666 0.87803 0.88532 0.86305 0.92765 0.92109 0.90731 0.90363 0.77560 0.93110 0.92285 0.92062 0.92694 0.92768 0.92022 0.94359 0.93683 0.96568 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 14.31 29.01 0.42 -1.19 16 2 C -0.15 -1.57 9.89 -36.02 -0.36 -1.92 16 3 C 0.09 0.94 6.35 36.01 0.23 1.16 16 4 O -0.36 -5.54 9.86 -55.14 -0.54 -6.08 16 5 C 0.05 0.60 6.42 36.01 0.23 0.83 16 6 C 0.51 9.20 7.87 -10.98 -0.09 9.11 16 7 O -0.51 -12.24 16.16 -14.35 -0.23 -12.47 16 8 N -0.72 -11.67 5.08 -53.69 -0.27 -11.94 16 9 C 0.12 2.32 2.60 -67.81 -0.18 2.14 16 10 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 11 C -0.12 -1.86 5.35 -26.69 -0.14 -2.00 16 12 C -0.13 -2.16 5.37 -26.61 -0.14 -2.30 16 13 C 0.16 3.40 3.50 -67.60 -0.24 3.17 16 14 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 15 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 16 N -0.58 -14.72 2.99 -164.78 -0.49 -15.22 16 17 C -0.25 -7.07 8.61 -15.06 -0.13 -7.20 16 18 H 0.07 1.87 6.20 -52.49 -0.33 1.55 16 19 C 0.01 0.19 4.96 -17.43 -0.09 0.11 16 20 N -0.90 -27.12 11.14 55.49 0.62 -26.51 16 21 Si 0.90 22.84 29.58 -169.99 -5.03 17.82 16 22 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 C 0.17 4.11 4.86 -3.71 -0.02 4.09 16 26 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.10 0.70 7.90 -52.49 -0.41 0.29 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.05 0.48 7.86 -51.93 -0.41 0.07 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.39 4.70 8.60 -40.82 -0.35 4.34 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.05 7.40 -51.92 -0.38 0.66 16 39 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 2.79 6.06 -51.93 -0.31 2.48 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -34.73 349.28 -8.09 -42.82 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.20 Total: 2.61 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.21 Total: 3.70 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.15 Total: -53.66 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.78 Total: -18.55 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.73 -8.09 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131946792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.362 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds