Wall clock time and date at job start Tue Mar 31 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 O 1.42903 * 109.47090 * 119.99893 * 2 1 3 5 5 C 1.42903 * 114.00065 * 150.00190 * 4 2 1 6 6 C 1.50694 * 109.47123 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99974 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99973 * 179.97438 * 6 5 4 9 9 C 1.47892 * 134.34311 * 180.02562 * 8 6 5 10 10 C 1.52375 * 85.73257 * 156.54358 * 9 8 6 11 11 C 1.48161 * 134.44944 * 359.88843 * 8 6 5 12 12 C 1.53654 * 116.39618 * 141.28147 * 10 9 8 13 13 C 1.54605 * 102.73195 * 162.91767 * 12 10 9 14 14 N 1.47144 * 107.36262 * 339.24918 * 13 12 10 15 15 C 1.36937 * 125.58305 * 179.09493 * 14 13 12 16 16 H 1.08002 * 119.99549 * 179.97438 * 15 14 13 17 17 C 1.38811 * 120.00398 * 359.97438 * 15 14 13 18 18 N 1.31627 * 119.99797 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00157 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47012 * 89.99953 * 19 17 15 21 21 H 1.48494 * 109.47210 * 209.99595 * 19 17 15 22 22 H 1.48500 * 109.47093 * 330.00043 * 19 17 15 23 23 C 1.47719 * 108.82637 * 359.07314 * 14 13 12 24 24 H 1.09002 * 109.47092 * 300.00530 * 1 2 3 25 25 H 1.09000 * 109.47058 * 59.99592 * 1 2 3 26 26 H 1.08995 * 109.47170 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47368 * 239.99899 * 2 1 3 28 28 H 1.09001 * 109.46916 * 299.99621 * 3 2 1 29 29 H 1.08996 * 109.47383 * 60.00165 * 3 2 1 30 30 H 1.09001 * 109.46968 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47210 * 59.99375 * 5 4 2 32 32 H 1.09003 * 109.46543 * 300.00012 * 5 4 2 33 33 H 1.09002 * 113.85436 * 42.31390 * 9 8 6 34 34 H 1.08998 * 113.84884 * 270.77567 * 9 8 6 35 35 H 1.08997 * 113.74300 * 89.28005 * 11 8 6 36 36 H 1.09006 * 114.04347 * 317.66282 * 11 8 6 37 37 H 1.08994 * 110.76150 * 281.23220 * 12 10 9 38 38 H 1.09004 * 110.75900 * 44.61270 * 12 10 9 39 39 H 1.08996 * 109.86482 * 98.69071 * 13 12 10 40 40 H 1.08997 * 109.86858 * 219.66814 * 13 12 10 41 41 H 0.96999 * 119.99806 * 180.02562 * 18 17 15 42 42 H 1.09004 * 110.40181 * 263.66202 * 23 14 13 43 43 H 1.09001 * 110.40025 * 141.25086 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9887 6 6 3.6698 -1.9977 2.2750 7 8 2.9496 -1.9276 3.2483 8 7 4.8309 -2.6787 2.3435 9 6 5.5224 -3.4385 3.4073 10 6 6.2262 -4.1691 2.2703 11 6 5.9225 -2.9675 1.3842 12 6 7.7109 -4.5003 2.4867 13 6 7.9792 -5.5800 1.4131 14 7 6.6794 -6.1584 1.0376 15 6 6.4837 -7.1373 0.1003 16 1 5.4862 -7.4973 -0.1044 17 6 7.5674 -7.6670 -0.5867 18 7 8.7830 -7.2279 -0.3376 19 14 7.3005 -9.0030 -1.8648 20 1 7.0796 -8.3791 -3.1942 21 1 8.4978 -9.8794 -1.9222 22 1 6.1119 -9.8123 -1.4942 23 6 5.6202 -5.5103 1.8378 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 4.0199 -0.5874 0.7125 32 1 3.1808 -2.0707 0.1987 33 1 4.8609 -4.0735 3.9966 34 1 6.1886 -2.8315 4.0204 35 1 6.7108 -2.2148 1.3767 36 1 5.5770 -3.2330 0.3850 37 1 8.3320 -3.6213 2.3144 38 1 7.8756 -4.9010 3.4870 39 1 8.4485 -5.1259 0.5404 40 1 8.6279 -6.3550 1.8211 41 1 9.5401 -7.5978 -0.8180 42 1 5.3785 -6.1170 2.7106 43 1 4.7307 -5.3468 1.2295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147146364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:58 Heat of formation + Delta-G solvation = -19.393774 kcal Electronic energy + Delta-G solvation = -22620.894541 eV Core-core repulsion = 19282.386354 eV Total energy + Delta-G solvation = -3338.508187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53780 -38.90215 -37.61814 -35.57440 -32.95275 -32.26327 -30.03609 -28.89781 -27.56867 -27.13570 -26.15416 -25.43261 -23.47718 -21.52247 -20.33996 -19.39348 -18.29852 -17.22828 -16.98872 -16.64750 -16.12790 -15.63897 -15.01838 -14.88791 -14.55426 -14.20810 -13.79882 -13.68826 -13.20151 -12.96470 -12.66446 -12.54063 -12.41195 -12.26913 -12.08556 -11.87283 -11.82979 -11.63590 -11.11943 -10.96939 -10.93345 -10.79330 -10.42803 -10.20700 -10.12324 -9.89798 -9.82560 -9.70211 -9.43059 -8.63685 -8.55290 -6.87985 -5.75387 -3.08941 2.59103 2.72512 3.37317 3.43166 3.44756 3.67390 4.40822 4.48210 4.65732 4.71675 4.78317 4.94717 4.95842 5.01785 5.15600 5.18432 5.34725 5.43930 5.46466 5.49524 5.55053 5.60536 5.63613 5.70616 5.72008 5.78850 5.88300 5.93778 5.98177 6.13233 6.19588 6.43655 6.48850 6.63949 6.69341 6.98327 7.51811 7.56763 7.78407 7.79759 8.21055 8.27059 9.18107 9.77706 10.43189 11.36174 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.003789 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.608338 B = 7387.577664 C = 8250.354227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.175 4.175 4 O -0.359 6.359 5 C 0.050 3.950 6 C 0.536 3.464 7 O -0.530 6.530 8 N -0.643 5.643 9 C 0.126 3.874 10 C -0.104 4.104 11 C 0.120 3.880 12 C -0.131 4.131 13 C 0.178 3.822 14 N -0.605 5.605 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.162 3.838 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.252 0.748 42 H 0.026 0.974 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 14.529 1.002 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.233 4.233 4 O -0.277 6.277 5 C -0.030 4.030 6 C 0.324 3.676 7 O -0.407 6.407 8 N -0.380 5.380 9 C 0.003 3.997 10 C -0.106 4.106 11 C -0.002 4.002 12 C -0.170 4.170 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.036 3.964 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.168 14.547 1.532 16.753 hybrid contribution 0.217 -0.638 -1.031 1.231 sum -7.951 13.909 0.501 16.029 Atomic orbital electron populations 1.21845 0.93326 1.02963 1.02475 1.22173 0.95327 0.92454 0.88062 1.22310 1.01550 0.96779 1.02655 1.88046 1.34817 1.69705 1.35172 1.22153 0.87761 0.96967 0.96094 1.19838 0.80355 0.77889 0.89487 1.90705 1.51748 1.60065 1.38139 1.50227 1.18610 1.52507 1.16650 1.22989 0.92991 0.91616 0.92065 1.22453 0.97788 0.95584 0.94775 1.23140 0.87060 0.95051 0.94996 1.22677 0.92848 1.00412 1.01070 1.21207 0.87760 0.92084 0.93571 1.44567 1.01203 1.43473 1.43943 1.19049 0.93436 1.11183 1.11996 0.90488 1.24784 0.95342 1.00076 1.00129 1.69958 0.97656 1.45047 1.44277 0.86127 0.76972 0.81336 0.81379 1.21628 1.21667 1.20700 1.21041 0.92135 0.88785 0.94475 0.91680 0.91194 0.91808 0.91943 0.91552 0.91653 0.92493 0.90590 0.90203 0.89994 0.89739 0.89558 0.89449 0.91703 0.91657 0.93466 0.93817 0.93751 0.95675 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.56 37.15 0.36 -0.95 16 2 C 0.08 0.78 3.34 -26.73 -0.09 0.69 16 3 C -0.18 -1.48 9.53 37.16 0.35 -1.12 16 4 O -0.36 -5.00 9.52 -55.14 -0.52 -5.52 16 5 C 0.05 0.64 5.98 36.00 0.22 0.85 16 6 C 0.54 8.66 8.13 -10.99 -0.09 8.57 16 7 O -0.53 -10.69 17.22 -14.35 -0.25 -10.93 16 8 N -0.64 -9.49 3.63 -185.47 -0.67 -10.17 16 9 C 0.13 1.77 8.20 -3.60 -0.03 1.74 16 10 C -0.10 -1.64 0.99 -154.82 -0.15 -1.80 16 11 C 0.12 1.65 7.93 -3.46 -0.03 1.62 16 12 C -0.13 -2.16 6.36 -25.55 -0.16 -2.32 16 13 C 0.18 4.02 5.39 -2.85 -0.02 4.01 16 14 N -0.61 -14.67 3.41 -170.50 -0.58 -15.25 16 15 C -0.23 -6.16 10.28 -15.06 -0.15 -6.31 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.13 10.30 55.49 0.57 -25.56 16 19 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.16 3.19 6.63 -3.17 -0.02 3.17 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.55 7.79 -51.93 -0.40 0.14 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 32 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 33 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 36 H 0.09 1.24 8.12 -51.93 -0.42 0.82 16 37 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 40 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -32.56 350.88 -8.54 -41.10 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -7.44 Total: -3.36 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 0.09 Total: 7.85 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.68 Total: -50.98 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.77 Total: -16.46 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.56 -8.54 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147146364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.705 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds