Wall clock time and date at job start Tue Mar 31 2020 02:20:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.50699 * 119.99879 * 2 1
4 4 C 1.32995 * 119.99783 * 180.02562 * 2 1 3
5 5 C 1.47099 * 120.00130 * 352.42603 * 4 2 1
6 6 O 1.21608 * 120.00139 * 353.90007 * 5 4 2
7 7 N 1.34774 * 119.99828 * 173.89343 * 5 4 2
8 8 C 1.46505 * 120.00147 * 180.02562 * 7 5 4
9 9 C 1.52996 * 109.47398 * 180.02562 * 8 7 5
10 10 H 1.09003 * 109.46658 * 305.00606 * 9 8 7
11 11 C 1.54804 * 109.47186 * 185.01178 * 9 8 7
12 12 N 1.45124 * 109.54041 * 172.10968 * 11 9 8
13 13 C 1.36934 * 118.75337 * 269.28921 * 12 11 9
14 14 H 1.08001 * 120.00608 * 30.70176 * 13 12 11
15 15 C 1.38819 * 119.99566 * 210.69573 * 13 12 11
16 16 N 1.31616 * 120.00083 * 11.79283 * 15 13 12
17 17 Si 1.86802 * 119.99816 * 191.79346 * 15 13 12
18 18 H 1.48505 * 109.46930 * 60.00187 * 17 15 13
19 19 H 1.48498 * 109.47092 * 179.97438 * 17 15 13
20 20 H 1.48494 * 109.47160 * 300.00024 * 17 15 13
21 21 C 1.47501 * 122.48107 * 89.28774 * 12 11 9
22 22 C 1.53568 * 111.03005 * 318.37022 * 21 12 11
23 23 C 1.51528 * 109.58283 * 320.02596 * 22 21 12
24 24 O 1.38010 * 109.46969 * 64.99854 * 9 8 7
25 25 H 1.09005 * 109.46954 * 265.78318 * 1 2 3
26 26 H 1.08998 * 109.47185 * 25.78287 * 1 2 3
27 27 H 1.08994 * 109.47444 * 145.78510 * 1 2 3
28 28 H 1.08994 * 109.47073 * 270.00211 * 3 2 1
29 29 H 1.08995 * 109.47015 * 30.00476 * 3 2 1
30 30 H 1.08999 * 109.46584 * 150.00168 * 3 2 1
31 31 H 1.07999 * 119.99555 * 172.43388 * 4 2 1
32 32 H 0.96999 * 120.00393 * 0.02562 * 7 5 4
33 33 H 1.09001 * 109.46831 * 60.00148 * 8 7 5
34 34 H 1.09000 * 109.47229 * 300.00396 * 8 7 5
35 35 H 1.09002 * 109.45937 * 292.13537 * 11 9 8
36 36 H 1.09005 * 109.45960 * 52.08816 * 11 9 8
37 37 H 0.97000 * 120.00380 * 180.02562 * 16 15 13
38 38 H 1.09003 * 109.16549 * 197.97528 * 21 12 11
39 39 H 1.09000 * 109.12359 * 78.74984 * 21 12 11
40 40 H 1.08999 * 109.45349 * 199.98458 * 22 21 12
41 41 H 1.09004 * 109.44806 * 80.05893 * 22 21 12
42 42 H 1.08997 * 109.59129 * 331.61246 * 23 22 21
43 43 H 1.09008 * 109.58769 * 211.18017 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2605 1.3051 0.0000
4 6 2.1720 -1.1518 -0.0005
5 6 1.4461 -2.4202 0.1668
6 8 0.2559 -2.4114 0.4162
7 7 2.1001 -3.5922 0.0436
8 6 1.3771 -4.8555 0.2097
9 6 2.3447 -6.0256 0.0215
10 1 2.8428 -5.9334 -0.9436
11 6 1.5588 -7.3583 0.0713
12 7 2.4384 -8.4543 -0.2909
13 6 2.5217 -8.8248 -1.6066
14 1 2.3839 -8.0887 -2.3847
15 6 2.7834 -10.1467 -1.9401
16 7 2.7220 -11.0829 -1.0170
17 14 3.2228 -10.5967 -3.6991
18 1 4.4563 -9.8741 -4.1014
19 1 3.4546 -12.0605 -3.7924
20 1 2.1077 -10.2130 -4.6015
21 6 3.2460 -9.1842 0.7045
22 6 3.8661 -8.2191 1.7255
23 6 4.3392 -6.9658 1.0174
24 8 3.2877 -6.0093 1.0292
25 1 -0.3633 -0.0756 1.0249
26 1 -0.3633 0.9253 -0.4470
27 1 -0.3634 -0.8497 -0.5778
28 1 2.4421 1.6198 -1.0276
29 1 1.6714 2.0647 0.5139
30 1 3.2129 1.1747 0.5138
31 1 3.2449 -1.1558 -0.1237
32 1 3.0495 -3.5993 -0.1550
33 1 0.5811 -4.9189 -0.5323
34 1 0.9457 -4.8985 1.2098
35 1 1.1769 -7.5173 1.0798
36 1 0.7252 -7.3148 -0.6296
37 1 2.9052 -12.0065 -1.2500
38 1 4.0427 -9.7240 0.1926
39 1 2.6090 -9.8976 1.2273
40 1 4.7127 -8.7019 2.2137
41 1 3.1193 -7.9534 2.4738
42 1 4.6037 -7.2056 -0.0124
43 1 5.2084 -6.5597 1.5350
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001149117623.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:20:04
Heat of formation + Delta-G solvation = -48.442410 kcal
Electronic energy + Delta-G solvation = -22675.078391 eV
Core-core repulsion = 19335.310560 eV
Total energy + Delta-G solvation = -3339.767830 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-39.78999 -38.81164 -35.81103 -35.11683 -34.42614 -32.14393 -31.49584 -29.14087
-27.98086 -27.52094 -25.56829 -25.11536 -22.83425 -20.96817 -20.78645 -19.56589
-18.74922 -16.98049 -16.89970 -16.13751 -15.81543 -15.20447 -15.02607 -14.80431
-14.30884 -14.17609 -13.86009 -13.67327 -13.48375 -12.99590 -12.72969 -12.54813
-12.46882 -12.18094 -12.06673 -11.79659 -11.66814 -11.39863 -11.19429 -10.97411
-10.83435 -10.67607 -10.26227 -9.89254 -9.76030 -9.69245 -9.51120 -9.25537
-8.81408 -8.71690 -8.46719 -6.69655 -5.85223 -3.35557 1.32447 3.33028
3.38808 3.39115 3.39493 3.44084 4.18473 4.42711 4.67118 4.71023
5.11596 5.21450 5.23970 5.30837 5.35451 5.51042 5.56023 5.60178
5.64423 5.71534 5.75596 5.87924 6.00822 6.02056 6.05543 6.18036
6.27267 6.35851 6.38675 6.47438 6.54758 6.69065 6.70906 6.74682
6.84075 7.33222 7.61865 7.73673 7.75100 8.22168 8.40565 8.42451
9.16767 9.79836 10.28473 11.22042
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.024715 B = 0.003559 C = 0.003352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1132.646195 B = 7866.306119 C = 8351.314774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.039 4.039
3 C -0.126 4.126
4 C -0.232 4.232
5 C 0.541 3.459
6 O -0.548 6.548
7 N -0.717 5.717
8 C 0.133 3.867
9 C 0.067 3.933
10 H 0.051 0.949
11 C 0.128 3.872
12 N -0.591 5.591
13 C -0.269 4.269
14 H 0.064 0.936
15 C 0.011 3.989
16 N -0.902 5.902
17 Si 0.904 3.096
18 H -0.283 1.283
19 H -0.290 1.290
20 H -0.281 1.281
21 C 0.178 3.822
22 C -0.177 4.177
23 C 0.088 3.912
24 O -0.396 6.396
25 H 0.077 0.923
26 H 0.052 0.948
27 H 0.091 0.909
28 H 0.076 0.924
29 H 0.071 0.929
30 H 0.070 0.930
31 H 0.124 0.876
32 H 0.402 0.598
33 H 0.079 0.921
34 H 0.071 0.929
35 H 0.043 0.957
36 H 0.056 0.944
37 H 0.255 0.745
38 H 0.070 0.930
39 H 0.029 0.971
40 H 0.060 0.940
41 H 0.058 0.942
42 H 0.061 0.939
43 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.083 18.278 2.926 18.628
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.041 4.041
3 C -0.183 4.183
4 C -0.253 4.253
5 C 0.330 3.670
6 O -0.429 6.429
7 N -0.367 5.367
8 C 0.009 3.991
9 C 0.005 3.995
10 H 0.068 0.932
11 C -0.001 4.001
12 N -0.312 5.312
13 C -0.399 4.399
14 H 0.081 0.919
15 C -0.189 4.189
16 N -0.545 5.545
17 Si 0.733 3.267
18 H -0.209 1.209
19 H -0.216 1.216
20 H -0.207 1.207
21 C 0.053 3.947
22 C -0.216 4.216
23 C 0.012 3.988
24 O -0.315 6.315
25 H 0.096 0.904
26 H 0.071 0.929
27 H 0.109 0.891
28 H 0.094 0.906
29 H 0.090 0.910
30 H 0.088 0.912
31 H 0.142 0.858
32 H 0.236 0.764
33 H 0.097 0.903
34 H 0.089 0.911
35 H 0.061 0.939
36 H 0.074 0.926
37 H 0.065 0.935
38 H 0.089 0.911
39 H 0.047 0.953
40 H 0.079 0.921
41 H 0.076 0.924
42 H 0.079 0.921
43 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 1.250 18.129 3.243 18.459
hybrid contribution 0.907 -0.737 -1.211 1.682
sum 2.157 17.392 2.032 17.643
Atomic orbital electron populations
1.21155 0.90945 1.02466 1.03527 1.22529 0.96893 0.94371 0.90288
1.20989 1.00065 0.94479 1.02739 1.22414 1.00259 0.92229 1.10385
1.18536 0.86914 0.84281 0.77232 1.90737 1.15266 1.87729 1.49189
1.45907 1.13254 1.05668 1.71851 1.21399 0.94278 0.81044 1.02375
1.22621 0.90386 0.95986 0.90518 0.93155 1.21424 0.92578 0.87253
0.98875 1.43771 1.46496 1.35987 1.04937 1.19138 1.45796 0.91817
0.83138 0.91877 1.25172 1.00574 0.95700 0.97428 1.70022 1.51779
1.00202 1.32502 0.86367 0.78602 0.77167 0.84558 1.20950 1.21559
1.20738 1.20959 0.94381 0.90735 0.88580 1.22773 1.00601 0.97975
1.00236 1.22009 0.87772 0.88272 1.00753 1.86077 1.39030 1.56191
1.50203 0.90433 0.92890 0.89081 0.90582 0.90995 0.91156 0.85787
0.76397 0.90315 0.91074 0.93873 0.92602 0.93463 0.91140 0.95326
0.92134 0.92356 0.92099 0.91283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.35 8.49 36.01 0.31 -1.04 16
2 C -0.04 -0.39 6.11 -101.17 -0.62 -1.01 16
3 C -0.13 -0.85 10.02 36.00 0.36 -0.49 16
4 C -0.23 -2.59 9.62 -37.81 -0.36 -2.95 16
5 C 0.54 7.81 7.61 -12.67 -0.10 7.71 16
6 O -0.55 -9.43 13.29 5.27 0.07 -9.36 16
7 N -0.72 -10.06 5.49 -61.49 -0.34 -10.39 16
8 C 0.13 2.10 5.34 -4.04 -0.02 2.08 16
9 C 0.07 1.18 2.68 -25.78 -0.07 1.11 16
10 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16
11 C 0.13 2.66 5.12 -3.83 -0.02 2.64 16
12 N -0.59 -14.33 2.21 -172.02 -0.38 -14.71 16
13 C -0.27 -7.15 9.42 -15.06 -0.14 -7.29 16
14 H 0.06 1.65 7.86 -52.49 -0.41 1.24 16
15 C 0.01 0.29 4.95 -17.43 -0.09 0.21 16
16 N -0.90 -25.63 11.10 55.49 0.62 -25.02 16
17 Si 0.90 21.25 29.57 -169.99 -5.03 16.22 16
18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
21 C 0.18 4.17 4.68 -3.20 -0.01 4.16 16
22 C -0.18 -3.31 5.78 -27.18 -0.16 -3.47 16
23 C 0.09 1.55 6.37 36.41 0.23 1.78 16
24 O -0.40 -7.06 9.38 -26.52 -0.25 -7.31 16
25 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16
26 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16
27 H 0.09 1.20 6.07 -51.93 -0.32 0.88 16
28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16
29 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16
30 H 0.07 0.42 8.07 -51.93 -0.42 0.01 16
31 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16
32 H 0.40 4.96 8.44 -40.82 -0.34 4.62 16
33 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16
34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
35 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16
36 H 0.06 1.16 7.98 -51.93 -0.41 0.75 16
37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
38 H 0.07 1.81 6.61 -51.93 -0.34 1.47 16
39 H 0.03 0.73 7.99 -51.93 -0.41 0.32 16
40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
41 H 0.06 1.10 8.01 -51.93 -0.42 0.68 16
42 H 0.06 1.19 7.40 -51.93 -0.38 0.81 16
43 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16
LS Contribution 344.60 15.07 5.19 5.19
Total: -1.00 -30.28 344.60 -8.04 -38.33
By element:
Atomic # 1 Polarization: 10.86 SS G_CDS: -7.24 Total: 3.62 kcal
Atomic # 6 Polarization: 4.13 SS G_CDS: -0.69 Total: 3.44 kcal
Atomic # 7 Polarization: -50.02 SS G_CDS: -0.10 Total: -50.12 kcal
Atomic # 8 Polarization: -16.49 SS G_CDS: -0.18 Total: -16.67 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -30.28 -8.04 -38.33 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001149117623.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.114 kcal
(2) G-P(sol) polarization free energy of solvation -30.284 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds