Wall clock time and date at job start Tue Mar 31 2020 02:20:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.50699 * 119.99879 * 2 1
4 4 C 1.32995 * 119.99783 * 180.02562 * 2 1 3
5 5 C 1.47099 * 120.00130 * 352.42603 * 4 2 1
6 6 O 1.21608 * 120.00139 * 353.90007 * 5 4 2
7 7 N 1.34774 * 119.99828 * 173.89343 * 5 4 2
8 8 C 1.46505 * 120.00147 * 180.02562 * 7 5 4
9 9 C 1.52996 * 109.47398 * 180.02562 * 8 7 5
10 10 H 1.09003 * 109.46658 * 305.00606 * 9 8 7
11 11 C 1.54804 * 109.47186 * 185.01178 * 9 8 7
12 12 N 1.45124 * 109.54041 * 172.10968 * 11 9 8
13 13 C 1.36934 * 118.75337 * 269.28921 * 12 11 9
14 14 H 1.08001 * 120.00608 * 30.70176 * 13 12 11
15 15 C 1.38819 * 119.99566 * 210.69573 * 13 12 11
16 16 N 1.31616 * 120.00083 * 11.79283 * 15 13 12
17 17 Si 1.86802 * 119.99816 * 191.79346 * 15 13 12
18 18 H 1.48505 * 109.46930 * 60.00187 * 17 15 13
19 19 H 1.48498 * 109.47092 * 179.97438 * 17 15 13
20 20 H 1.48494 * 109.47160 * 300.00024 * 17 15 13
21 21 C 1.47501 * 122.48107 * 89.28774 * 12 11 9
22 22 C 1.53568 * 111.03005 * 318.37022 * 21 12 11
23 23 C 1.51528 * 109.58283 * 320.02596 * 22 21 12
24 24 O 1.38010 * 109.46969 * 64.99854 * 9 8 7
25 25 H 1.09005 * 109.46954 * 265.78318 * 1 2 3
26 26 H 1.08998 * 109.47185 * 25.78287 * 1 2 3
27 27 H 1.08994 * 109.47444 * 145.78510 * 1 2 3
28 28 H 1.08994 * 109.47073 * 270.00211 * 3 2 1
29 29 H 1.08995 * 109.47015 * 30.00476 * 3 2 1
30 30 H 1.08999 * 109.46584 * 150.00168 * 3 2 1
31 31 H 1.07999 * 119.99555 * 172.43388 * 4 2 1
32 32 H 0.96999 * 120.00393 * 0.02562 * 7 5 4
33 33 H 1.09001 * 109.46831 * 60.00148 * 8 7 5
34 34 H 1.09000 * 109.47229 * 300.00396 * 8 7 5
35 35 H 1.09002 * 109.45937 * 292.13537 * 11 9 8
36 36 H 1.09005 * 109.45960 * 52.08816 * 11 9 8
37 37 H 0.97000 * 120.00380 * 180.02562 * 16 15 13
38 38 H 1.09003 * 109.16549 * 197.97528 * 21 12 11
39 39 H 1.09000 * 109.12359 * 78.74984 * 21 12 11
40 40 H 1.08999 * 109.45349 * 199.98458 * 22 21 12
41 41 H 1.09004 * 109.44806 * 80.05893 * 22 21 12
42 42 H 1.08997 * 109.59129 * 331.61246 * 23 22 21
43 43 H 1.09008 * 109.58769 * 211.18017 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2605 1.3051 0.0000
4 6 2.1720 -1.1518 -0.0005
5 6 1.4461 -2.4202 0.1668
6 8 0.2559 -2.4114 0.4162
7 7 2.1001 -3.5922 0.0436
8 6 1.3771 -4.8555 0.2097
9 6 2.3447 -6.0256 0.0215
10 1 2.8428 -5.9334 -0.9436
11 6 1.5588 -7.3583 0.0713
12 7 2.4384 -8.4543 -0.2909
13 6 2.5217 -8.8248 -1.6066
14 1 2.3839 -8.0887 -2.3847
15 6 2.7834 -10.1467 -1.9401
16 7 2.7220 -11.0829 -1.0170
17 14 3.2228 -10.5967 -3.6991
18 1 4.4563 -9.8741 -4.1014
19 1 3.4546 -12.0605 -3.7924
20 1 2.1077 -10.2130 -4.6015
21 6 3.2460 -9.1842 0.7045
22 6 3.8661 -8.2191 1.7255
23 6 4.3392 -6.9658 1.0174
24 8 3.2877 -6.0093 1.0292
25 1 -0.3633 -0.0756 1.0249
26 1 -0.3633 0.9253 -0.4470
27 1 -0.3634 -0.8497 -0.5778
28 1 2.4421 1.6198 -1.0276
29 1 1.6714 2.0647 0.5139
30 1 3.2129 1.1747 0.5138
31 1 3.2449 -1.1558 -0.1237
32 1 3.0495 -3.5993 -0.1550
33 1 0.5811 -4.9189 -0.5323
34 1 0.9457 -4.8985 1.2098
35 1 1.1769 -7.5173 1.0798
36 1 0.7252 -7.3148 -0.6296
37 1 2.9052 -12.0065 -1.2500
38 1 4.0427 -9.7240 0.1926
39 1 2.6090 -9.8976 1.2273
40 1 4.7127 -8.7019 2.2137
41 1 3.1193 -7.9534 2.4738
42 1 4.6037 -7.2056 -0.0124
43 1 5.2084 -6.5597 1.5350
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001149117623.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:20:03
Heat of formation + Delta-G solvation = -67.557534 kcal
Electronic energy + Delta-G solvation = -22675.907285 eV
Core-core repulsion = 19335.310560 eV
Total energy + Delta-G solvation = -3340.596724 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 282.173 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.00630 -40.24962 -37.07473 -36.54984 -35.65365 -33.67750 -33.41741 -30.51748
-28.82681 -28.56526 -27.20876 -26.81888 -24.42323 -22.31433 -22.06928 -21.32237
-19.72680 -18.85494 -17.95082 -17.61194 -17.25251 -16.78269 -16.43794 -16.13780
-15.69886 -15.54190 -15.08403 -14.80005 -14.66692 -14.53967 -14.23091 -13.70700
-13.61217 -13.31703 -13.17379 -13.13415 -13.00801 -12.75444 -12.64956 -12.48988
-12.43380 -12.35014 -12.10821 -11.76540 -11.48733 -11.32156 -10.63836 -10.56284
-10.29256 -10.21859 -9.77169 -8.67425 -7.90593 -5.43982 0.45513 1.45793
1.46660 1.53770 2.30388 2.35434 2.49030 2.75959 3.25380 3.55948
3.85700 3.98016 4.06838 4.13547 4.20816 4.31933 4.37782 4.52866
4.58339 4.61063 4.66188 4.72308 4.73677 4.80814 4.85053 4.90542
4.95036 5.07832 5.13118 5.17262 5.21353 5.24089 5.44700 5.49791
5.60357 5.60761 5.69159 5.71924 6.36223 6.66968 6.73806 7.13715
7.33089 7.84010 8.27542 9.14557
Molecular weight = 282.17amu
Principal moments of inertia in cm(-1)
A = 0.024715 B = 0.003559 C = 0.003352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1132.646195 B = 7866.306119 C = 8351.314774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.028 4.028
3 C -0.123 4.123
4 C -0.249 4.249
5 C 0.534 3.466
6 O -0.584 6.584
7 N -0.712 5.712
8 C 0.144 3.856
9 C 0.088 3.912
10 H 0.044 0.956
11 C 0.124 3.876
12 N -0.605 5.605
13 C -0.275 4.275
14 H 0.065 0.935
15 C -0.042 4.042
16 N -0.934 5.934
17 Si 0.967 3.033
18 H -0.275 1.275
19 H -0.294 1.294
20 H -0.276 1.276
21 C 0.187 3.813
22 C -0.164 4.164
23 C 0.091 3.909
24 O -0.392 6.392
25 H 0.067 0.933
26 H 0.077 0.923
27 H 0.063 0.937
28 H 0.092 0.908
29 H 0.083 0.917
30 H 0.082 0.918
31 H 0.151 0.849
32 H 0.412 0.588
33 H 0.076 0.924
34 H 0.063 0.937
35 H 0.041 0.959
36 H 0.050 0.950
37 H 0.251 0.749
38 H 0.042 0.958
39 H -0.006 1.006
40 H 0.086 0.914
41 H 0.059 0.941
42 H 0.040 0.960
43 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.524 20.942 2.723 21.410
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.030 4.030
3 C -0.179 4.179
4 C -0.269 4.269
5 C 0.326 3.674
6 O -0.467 6.467
7 N -0.363 5.363
8 C 0.019 3.981
9 C 0.026 3.974
10 H 0.062 0.938
11 C -0.004 4.004
12 N -0.327 5.327
13 C -0.405 4.405
14 H 0.083 0.917
15 C -0.238 4.238
16 N -0.579 5.579
17 Si 0.795 3.205
18 H -0.200 1.200
19 H -0.220 1.220
20 H -0.202 1.202
21 C 0.062 3.938
22 C -0.203 4.203
23 C 0.015 3.985
24 O -0.312 6.312
25 H 0.086 0.914
26 H 0.096 0.904
27 H 0.082 0.918
28 H 0.110 0.890
29 H 0.102 0.898
30 H 0.100 0.900
31 H 0.169 0.831
32 H 0.248 0.752
33 H 0.094 0.906
34 H 0.081 0.919
35 H 0.060 0.940
36 H 0.068 0.932
37 H 0.060 0.940
38 H 0.060 0.940
39 H 0.012 0.988
40 H 0.104 0.896
41 H 0.078 0.922
42 H 0.059 0.941
43 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 2.708 20.834 3.042 21.228
hybrid contribution 0.374 -1.514 -1.113 1.916
sum 3.082 19.320 1.929 19.659
Atomic orbital electron populations
1.21122 0.91998 1.02544 1.02638 1.22884 0.96501 0.95727 0.87904
1.21059 1.00255 0.92580 1.04047 1.22460 1.01396 0.90688 1.12395
1.19150 0.86675 0.85242 0.76345 1.90728 1.16897 1.88242 1.50867
1.45803 1.13670 1.04958 1.71840 1.21125 0.93721 0.81388 1.01840
1.22264 0.90015 0.94736 0.90368 0.93793 1.21565 0.92544 0.87869
0.98464 1.43974 1.47479 1.36788 1.04496 1.19438 1.44823 0.91942
0.84323 0.91740 1.25912 1.01115 0.95696 1.01071 1.70189 1.53265
1.00165 1.34274 0.85359 0.78544 0.76411 0.80208 1.20041 1.22047
1.20222 1.20744 0.92938 0.91305 0.88833 1.22628 1.01223 0.97654
0.98824 1.22086 0.88643 0.87883 0.99874 1.86104 1.38954 1.56077
1.50020 0.91405 0.90409 0.91819 0.88990 0.89785 0.89961 0.83137
0.75218 0.90607 0.91865 0.94041 0.93209 0.94021 0.93955 0.98754
0.89570 0.92189 0.94146 0.87305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.60 8.49 71.24 0.60 -1.99 16
2 C -0.03 -0.50 6.11 -17.62 -0.11 -0.61 16
3 C -0.12 -1.20 10.02 71.24 0.71 -0.49 16
4 C -0.25 -5.02 9.62 23.43 0.23 -4.80 16
5 C 0.53 14.97 7.61 86.57 0.66 15.63 16
6 O -0.58 -20.22 13.29 -4.05 -0.05 -20.27 16
7 N -0.71 -19.14 5.49 -466.72 -2.56 -21.70 16
8 C 0.14 4.48 5.34 86.38 0.46 4.94 16
9 C 0.09 3.05 2.68 31.21 0.08 3.14 16
10 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
11 C 0.12 5.19 5.12 87.25 0.45 5.63 16
12 N -0.61 -29.90 2.21 -698.16 -1.54 -31.44 16
13 C -0.28 -14.81 9.42 84.04 0.79 -14.02 16
14 H 0.06 3.39 7.86 -2.91 -0.02 3.36 16
15 C -0.04 -2.30 4.95 84.86 0.42 -1.88 16
16 N -0.93 -54.67 11.10 21.65 0.24 -54.43 16
17 Si 0.97 44.14 29.57 68.60 2.03 46.17 16
18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16
19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16
20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
21 C 0.19 8.95 4.68 86.38 0.40 9.35 16
22 C -0.16 -5.97 5.78 30.30 0.18 -5.80 16
23 C 0.09 3.01 6.37 71.50 0.46 3.47 16
24 O -0.39 -13.28 9.38 -117.81 -1.11 -14.39 16
25 H 0.07 1.52 8.07 -2.38 -0.02 1.50 16
26 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16
27 H 0.06 1.69 6.07 -2.39 -0.01 1.67 16
28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
29 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16
30 H 0.08 0.66 8.07 -2.39 -0.02 0.64 16
31 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16
32 H 0.41 9.36 8.44 -92.71 -0.78 8.58 16
33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16
34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
35 H 0.04 1.74 8.11 -2.39 -0.02 1.72 16
36 H 0.05 2.12 7.98 -2.38 -0.02 2.10 16
37 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16
38 H 0.04 2.24 6.61 -2.39 -0.02 2.22 16
39 H -0.01 -0.31 7.99 -2.39 -0.02 -0.32 16
40 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16
41 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16
42 H 0.04 1.53 7.40 -2.39 -0.02 1.51 16
43 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16
Total: -1.00 -67.06 344.60 2.54 -64.52
By element:
Atomic # 1 Polarization: 18.78 SS G_CDS: 0.20 Total: 18.98 kcal
Atomic # 6 Polarization: 7.24 SS G_CDS: 5.33 Total: 12.57 kcal
Atomic # 7 Polarization: -103.71 SS G_CDS: -3.86 Total: -107.58 kcal
Atomic # 8 Polarization: -33.51 SS G_CDS: -1.16 Total: -34.66 kcal
Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal
Total: -67.06 2.54 -64.52 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001149117623.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.036 kcal
(2) G-P(sol) polarization free energy of solvation -67.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds