Wall clock time and date at job start Tue Mar 31 2020 02:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50697 * 119.99649 * 2 1 4 4 C 1.32997 * 120.00235 * 180.02562 * 2 1 3 5 5 C 1.47104 * 119.99615 * 352.46253 * 4 2 1 6 6 O 1.21613 * 120.00012 * 353.82490 * 5 4 2 7 7 N 1.34778 * 119.99513 * 173.82819 * 5 4 2 8 8 C 1.46505 * 119.99715 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47056 * 180.02562 * 8 7 5 10 10 H 1.09003 * 108.45012 * 57.87476 * 9 8 7 11 11 C 1.47475 * 108.55122 * 175.84817 * 9 8 7 12 12 N 1.50120 * 106.49157 * 178.01012 * 11 9 8 13 13 C 1.36932 * 120.63854 * 111.36492 * 12 11 9 14 14 H 1.08001 * 119.99711 * 149.86004 * 13 12 11 15 15 C 1.38808 * 119.99949 * 329.85998 * 13 12 11 16 16 N 1.31618 * 120.00371 * 348.04325 * 15 13 12 17 17 Si 1.86807 * 119.99753 * 168.04796 * 15 13 12 18 18 H 1.48504 * 109.47003 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46823 * 299.99883 * 17 15 13 20 20 H 1.48496 * 109.47029 * 59.99935 * 17 15 13 21 21 C 1.43424 * 118.72527 * 291.10269 * 12 11 9 22 22 C 1.55331 * 116.24342 * 89.62133 * 21 12 11 23 23 C 1.55184 * 108.87126 * 319.46142 * 22 21 12 24 24 O 1.39636 * 110.57218 * 322.14321 * 23 22 21 25 25 H 1.09007 * 109.47141 * 265.81399 * 1 2 3 26 26 H 1.08995 * 109.47684 * 25.81826 * 1 2 3 27 27 H 1.09003 * 109.47194 * 145.81766 * 1 2 3 28 28 H 1.09007 * 109.47182 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47641 * 299.99886 * 3 2 1 30 30 H 1.09007 * 109.47078 * 60.00817 * 3 2 1 31 31 H 1.07993 * 120.00026 * 172.45923 * 4 2 1 32 32 H 0.96995 * 120.00311 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.47209 * 59.99547 * 8 7 5 34 34 H 1.08998 * 109.46894 * 299.99871 * 8 7 5 35 35 H 1.08998 * 110.11552 * 58.79631 * 11 9 8 36 36 H 1.09010 * 110.15095 * 297.23868 * 11 9 8 37 37 H 0.96998 * 119.99860 * 179.97438 * 16 15 13 38 38 H 1.08996 * 108.12683 * 211.38490 * 21 12 11 39 39 H 1.09000 * 108.12393 * 328.07364 * 21 12 11 40 40 H 1.08998 * 109.57058 * 79.28084 * 22 21 12 41 41 H 1.08998 * 109.56959 * 199.64742 * 22 21 12 42 42 H 1.08997 * 109.26133 * 82.42972 * 23 22 21 43 43 H 1.08999 * 109.25666 * 201.89965 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4460 -2.4203 0.1660 6 8 0.2559 -2.4114 0.4161 7 7 2.0998 -3.5922 0.0415 8 6 1.3767 -4.8556 0.2068 9 6 2.3442 -6.0256 0.0172 10 1 3.1526 -5.9257 0.7416 11 6 1.6199 -7.2817 0.2861 12 7 2.5943 -8.3967 0.0395 13 6 3.0600 -9.1588 1.0775 14 1 3.3337 -10.1901 0.9099 15 6 3.1803 -8.6060 2.3450 16 7 3.0761 -7.3041 2.5078 17 14 3.4902 -9.7099 3.8199 18 1 3.5789 -8.8808 5.0487 19 1 2.3736 -10.6794 3.9557 20 1 4.7649 -10.4468 3.6274 21 6 3.0238 -8.6521 -1.3049 22 6 4.2837 -7.8791 -1.7820 23 6 4.2099 -6.4227 -1.2512 24 8 2.8963 -5.9512 -1.2931 25 1 -0.3634 -0.0750 1.0250 26 1 -0.3634 0.9250 -0.4475 27 1 -0.3634 -0.8502 -0.5774 28 1 3.3321 1.1060 -0.0005 29 1 1.9971 1.8767 -0.8899 30 1 1.9971 1.8766 0.8901 31 1 3.2449 -1.1557 -0.1233 32 1 3.0491 -3.5992 -0.1575 33 1 0.5804 -4.9182 -0.5348 34 1 0.9458 -4.8994 1.2071 35 1 0.7684 -7.3751 -0.3879 36 1 1.2809 -7.3054 1.3219 37 1 3.1598 -6.9179 3.3937 38 1 3.2244 -9.7193 -1.3998 39 1 2.2021 -8.4030 -1.9764 40 1 5.1789 -8.3645 -1.3933 41 1 4.3153 -7.8694 -2.8715 42 1 4.5687 -6.3964 -0.2223 43 1 4.8408 -5.7828 -1.8682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149117624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:06 Heat of formation + Delta-G solvation = -41.468390 kcal Electronic energy + Delta-G solvation = -23173.245703 eV Core-core repulsion = 19833.780289 eV Total energy + Delta-G solvation = -3339.465414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.63648 -38.74674 -35.61191 -34.94188 -34.26531 -32.13516 -31.16978 -28.93591 -27.94315 -27.60112 -25.34038 -25.10910 -22.63640 -20.75139 -20.68831 -19.58868 -18.58265 -17.02870 -16.73255 -15.98061 -15.41400 -14.92833 -14.86043 -14.44561 -14.15206 -14.09014 -13.85046 -13.72588 -13.19547 -12.99232 -12.56417 -12.38708 -12.37058 -12.11836 -11.91076 -11.68870 -11.56226 -11.33172 -11.19582 -10.82922 -10.71790 -10.49201 -10.14024 -10.01468 -9.66103 -9.47751 -9.31763 -9.12498 -8.76274 -8.51199 -8.46230 -6.72593 -5.91107 -3.38225 1.47611 3.33105 3.39162 3.40529 3.58359 3.68215 4.42295 4.73964 4.80500 4.85163 5.25227 5.27830 5.30246 5.34860 5.42793 5.63931 5.69289 5.77134 5.85100 5.87175 5.95004 6.07207 6.12675 6.19404 6.36651 6.45377 6.50886 6.51738 6.59780 6.65347 6.70380 6.75693 6.84709 6.96469 7.02653 7.16409 7.34400 7.71606 7.97110 8.18585 8.36970 8.63190 9.08753 9.74207 10.31523 11.17281 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.004324 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.143005 B = 6474.289239 C = 7181.388544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.045 4.045 3 C -0.124 4.124 4 C -0.226 4.226 5 C 0.538 3.462 6 O -0.551 6.551 7 N -0.710 5.710 8 C 0.122 3.878 9 C 0.059 3.941 10 H 0.111 0.889 11 C 0.147 3.853 12 N -0.588 5.588 13 C -0.251 4.251 14 H 0.066 0.934 15 C 0.006 3.994 16 N -0.910 5.910 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.162 3.838 22 C -0.171 4.171 23 C 0.068 3.932 24 O -0.370 6.370 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.399 0.601 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.018 0.982 36 H 0.100 0.900 37 H 0.256 0.744 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 12.108 -5.505 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.047 4.047 3 C -0.181 4.181 4 C -0.247 4.247 5 C 0.328 3.672 6 O -0.432 6.432 7 N -0.360 5.360 8 C -0.003 4.003 9 C 0.000 4.000 10 H 0.128 0.872 11 C 0.022 3.978 12 N -0.309 5.309 13 C -0.380 4.380 14 H 0.084 0.916 15 C -0.192 4.192 16 N -0.555 5.555 17 Si 0.737 3.263 18 H -0.216 1.216 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.033 3.967 22 C -0.213 4.213 23 C -0.010 4.010 24 O -0.289 6.289 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.233 0.767 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.036 0.964 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.233 12.198 -5.319 13.309 hybrid contribution 1.098 -0.664 0.879 1.556 sum 0.865 11.534 -4.440 12.390 Atomic orbital electron populations 1.21114 0.91000 1.02312 1.03507 1.22487 0.96866 0.94338 0.90989 1.20980 0.99823 0.94640 1.02629 1.22490 1.00143 0.92350 1.09734 1.18529 0.86953 0.84332 0.77418 1.90721 1.15293 1.87760 1.49461 1.45855 1.13142 1.05769 1.71187 1.21674 0.95189 0.81925 1.01472 1.22367 0.99051 0.94277 0.84281 0.87183 1.20793 0.89902 0.85864 1.01246 1.44013 1.47221 1.37286 1.02364 1.19203 1.38265 0.92556 0.88008 0.91623 1.25064 0.99945 0.95455 0.98724 1.69776 1.54490 1.09086 1.22141 0.86295 0.78253 0.79736 0.81990 1.21592 1.20999 1.20985 1.20368 0.93240 0.96158 0.86941 1.23569 1.01614 0.97367 0.98707 1.22333 0.84105 0.93713 1.00870 1.87508 1.27155 1.83772 1.30436 0.90546 0.93069 0.89078 0.91515 0.90967 0.90620 0.85889 0.76677 0.92197 0.90537 0.96400 0.88155 0.93376 0.94982 0.95132 0.92530 0.93252 0.91875 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.50 36.00 0.31 -1.20 16 2 C -0.04 -0.52 6.11 -101.17 -0.62 -1.14 16 3 C -0.12 -1.00 10.10 36.00 0.36 -0.63 16 4 C -0.23 -2.94 9.62 -37.80 -0.36 -3.31 16 5 C 0.54 8.99 7.61 -12.66 -0.10 8.89 16 6 O -0.55 -10.66 13.29 5.27 0.07 -10.59 16 7 N -0.71 -11.91 5.43 -61.49 -0.33 -12.25 16 8 C 0.12 2.31 5.24 -4.04 -0.02 2.29 16 9 C 0.06 1.22 1.93 -29.39 -0.06 1.16 16 10 H 0.11 2.54 5.02 -51.93 -0.26 2.28 16 11 C 0.15 3.36 4.73 -4.68 -0.02 3.34 16 12 N -0.59 -14.23 2.58 -174.21 -0.45 -14.68 16 13 C -0.25 -6.55 9.60 -15.06 -0.14 -6.70 16 14 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 15 C 0.01 0.16 5.05 -17.43 -0.09 0.07 16 16 N -0.91 -23.75 9.34 55.49 0.52 -23.23 16 17 Si 0.91 20.86 29.57 -169.99 -5.03 15.84 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.16 3.46 5.33 -4.43 -0.02 3.43 16 22 C -0.17 -3.24 6.75 -24.34 -0.16 -3.40 16 23 C 0.07 1.28 6.38 38.31 0.24 1.53 16 24 O -0.37 -7.38 9.53 -31.92 -0.30 -7.69 16 25 H 0.08 0.99 8.07 -51.92 -0.42 0.57 16 26 H 0.05 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.09 1.34 6.06 -51.93 -0.31 1.02 16 28 H 0.07 0.48 7.82 -51.92 -0.41 0.08 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.12 1.31 7.88 -52.49 -0.41 0.90 16 32 H 0.40 6.07 8.31 -40.82 -0.34 5.73 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 2.51 6.24 -51.92 -0.32 2.19 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 39 H 0.03 0.64 7.97 -51.93 -0.41 0.22 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.34 6.66 -51.93 -0.35 1.00 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -28.27 339.43 -8.10 -36.37 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.00 Total: 6.77 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.68 Total: 4.33 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.27 Total: -50.15 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.23 Total: -18.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.27 -8.10 -36.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149117624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.096 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds