Wall clock time and date at job start Tue Mar 31 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 119.99874 * 2 1 4 4 C 1.53006 * 109.47010 * 124.99968 * 3 2 1 5 5 C 1.50695 * 109.46932 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00258 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99849 * 180.02562 * 5 4 3 8 8 C 1.46506 * 120.00287 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47165 * 179.97438 * 8 7 5 10 10 H 1.08995 * 109.40889 * 305.00127 * 9 8 7 11 11 C 1.54298 * 109.40378 * 185.16168 * 9 8 7 12 12 N 1.48179 * 110.69560 * 200.57324 * 11 9 8 13 13 C 1.36937 * 118.51544 * 138.76800 * 12 11 9 14 14 H 1.08001 * 120.00301 * 206.12294 * 13 12 11 15 15 C 1.38814 * 119.99636 * 26.12857 * 13 12 11 16 16 N 1.31622 * 120.00280 * 15.50698 * 15 13 12 17 17 Si 1.86799 * 120.00109 * 195.50422 * 15 13 12 18 18 H 1.48502 * 109.47019 * 59.99750 * 17 15 13 19 19 H 1.48499 * 109.47265 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47060 * 300.00329 * 17 15 13 21 21 C 1.44460 * 122.97436 * 318.79987 * 12 11 9 22 22 C 1.54873 * 109.33035 * 88.90666 * 21 12 11 23 23 C 1.47681 * 109.68340 * 290.10342 * 22 21 12 24 24 O 1.40525 * 109.34099 * 64.80024 * 9 8 7 25 25 H 1.07995 * 120.00408 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00131 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47126 * 5.00112 * 3 2 1 29 29 H 1.09000 * 109.47138 * 244.99555 * 3 2 1 30 30 H 1.08999 * 109.46698 * 59.99763 * 4 3 2 31 31 H 1.08999 * 109.47263 * 300.00085 * 4 3 2 32 32 H 0.97001 * 120.00227 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.46763 * 59.99752 * 8 7 5 34 34 H 1.08999 * 109.47029 * 300.00168 * 8 7 5 35 35 H 1.09006 * 109.23276 * 320.88770 * 11 9 8 36 36 H 1.09001 * 109.23322 * 80.30350 * 11 9 8 37 37 H 0.96996 * 120.00331 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.49755 * 208.86820 * 21 12 11 39 39 H 1.09003 * 109.48890 * 328.95401 * 21 12 11 40 40 H 1.08999 * 109.43312 * 50.17376 * 22 21 12 41 41 H 1.09006 * 109.43566 * 170.04051 * 22 21 12 42 42 H 1.09003 * 108.64669 * 181.87998 * 23 22 21 43 43 H 1.08998 * 108.64672 * 299.72163 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7889 2.6379 1.1813 6 8 3.5710 3.4640 0.3205 7 7 4.7060 2.8866 2.1371 8 6 5.4386 4.1553 2.1371 9 6 6.4102 4.1832 3.3186 10 1 5.8625 3.9968 4.2424 11 6 7.0861 5.5682 3.3939 12 7 8.3466 5.4943 4.1695 13 6 9.4360 6.1878 3.7141 14 1 10.4320 5.8548 3.9659 15 6 9.2600 7.3188 2.9288 16 7 8.0818 7.9027 2.8702 17 14 10.6954 8.0125 1.9552 18 1 11.1883 6.9866 1.0013 19 1 10.2496 9.2130 1.2035 20 1 11.7893 8.3887 2.8863 21 6 8.4784 4.7232 5.3840 22 6 8.9121 3.2792 5.0299 23 6 7.7986 2.5748 4.3629 24 8 7.3841 3.1854 3.1440 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 3.7398 0.5066 1.0921 31 1 2.4772 1.2356 2.1131 32 1 4.8811 2.2255 2.8250 33 1 4.7337 4.9818 2.2272 34 1 5.9960 4.2530 1.2055 35 1 7.3056 5.9160 2.3844 36 1 6.4088 6.2725 3.8770 37 1 7.9588 8.6928 2.3212 38 1 9.2302 5.1817 6.0262 39 1 7.5210 4.6981 5.9045 40 1 9.7725 3.3126 4.3615 41 1 9.1828 2.7477 5.9423 42 1 8.1100 1.5518 4.1517 43 1 6.9482 2.5435 5.0440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149331629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:13 Heat of formation + Delta-G solvation = -46.317956 kcal Electronic energy + Delta-G solvation = -22634.132925 eV Core-core repulsion = 19294.457218 eV Total energy + Delta-G solvation = -3339.675707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72640 -38.72509 -35.66621 -35.10794 -34.55073 -32.59032 -31.30919 -30.69092 -28.69143 -25.88488 -25.34672 -24.05524 -22.39004 -20.96377 -20.23149 -19.99045 -19.56640 -17.13314 -16.78893 -16.30028 -15.92226 -15.83169 -14.97618 -14.91579 -14.80354 -14.09999 -13.84977 -13.68950 -13.22923 -12.96419 -12.72902 -12.54959 -12.39267 -12.34110 -12.06017 -11.77566 -11.24693 -11.21071 -11.13471 -10.84730 -10.72660 -10.60101 -10.22699 -10.02725 -9.94383 -9.79852 -9.67375 -9.50961 -8.88171 -8.82629 -8.39510 -6.69479 -5.77274 -3.20249 2.02739 2.77939 3.34696 3.41497 3.47099 3.48873 4.27612 4.51997 4.62546 4.73990 4.93981 5.09432 5.12806 5.18433 5.38439 5.43379 5.45389 5.53713 5.61480 5.62640 5.74465 5.79063 5.89495 5.99614 6.02378 6.12047 6.23009 6.32240 6.37348 6.39030 6.48173 6.53959 6.66532 6.75911 6.96578 7.17875 7.57718 7.65293 7.82132 7.96776 8.37153 8.47082 9.22437 9.89115 10.33089 11.30718 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022712 B = 0.003659 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.556145 B = 7649.637327 C = 8488.010938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.080 4.080 4 C -0.135 4.135 5 C 0.507 3.493 6 O -0.544 6.544 7 N -0.723 5.723 8 C 0.124 3.876 9 C 0.056 3.944 10 H 0.047 0.953 11 C 0.166 3.834 12 N -0.586 5.586 13 C -0.256 4.256 14 H 0.064 0.936 15 C 0.005 3.995 16 N -0.906 5.906 17 Si 0.902 3.098 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.157 3.843 22 C -0.184 4.184 23 C 0.079 3.921 24 O -0.360 6.360 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.398 0.602 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.255 0.745 38 H 0.050 0.950 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 -15.513 1.055 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.118 4.118 4 C -0.175 4.175 5 C 0.293 3.707 6 O -0.422 6.422 7 N -0.374 5.374 8 C 0.000 4.000 9 C -0.004 4.004 10 H 0.065 0.935 11 C 0.040 3.960 12 N -0.307 5.307 13 C -0.385 4.385 14 H 0.082 0.918 15 C -0.194 4.194 16 N -0.551 5.551 17 Si 0.732 3.268 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.029 3.971 22 C -0.225 4.225 23 C 0.002 3.998 24 O -0.278 6.278 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.232 0.768 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.552 -14.770 0.174 18.153 hybrid contribution 0.844 0.053 0.116 0.853 sum -9.708 -14.718 0.289 17.633 Atomic orbital electron populations 1.23873 0.96000 1.01834 1.01559 1.23002 0.96088 0.98439 0.99552 1.20511 0.97840 0.95250 0.98188 1.21611 0.98996 0.95933 1.01001 1.20670 0.79861 0.88897 0.81262 1.90711 1.66032 1.48290 1.37160 1.46037 1.40358 1.20492 1.30481 1.21574 0.93394 0.85149 0.99876 1.23173 0.88970 0.92889 0.95395 0.93529 1.21630 0.86811 0.88834 0.98735 1.43571 1.10063 1.54326 1.22699 1.19128 0.86500 1.04070 1.28849 0.91825 1.25005 0.96758 0.96027 1.01575 1.70012 1.22444 1.20847 1.41777 0.86373 0.81995 0.78154 0.80252 1.21011 1.21617 1.20966 1.20667 0.97855 0.89627 0.88968 1.22304 1.00033 1.00400 0.99717 1.21278 0.96674 0.95448 0.86382 1.87427 1.58603 1.52420 1.29359 0.88603 0.88510 0.87367 0.90697 0.90129 0.88883 0.89011 0.76843 0.90228 0.90521 0.89805 0.94542 0.93520 0.93126 0.95387 0.91134 0.92382 0.91596 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 14.32 29.02 0.42 -1.09 16 2 C -0.15 -1.25 9.52 -36.02 -0.34 -1.59 16 3 C -0.08 -0.80 4.95 -27.88 -0.14 -0.94 16 4 C -0.14 -1.29 5.68 -27.88 -0.16 -1.45 16 5 C 0.51 7.13 7.83 -10.99 -0.09 7.04 16 6 O -0.54 -9.97 15.98 5.56 0.09 -9.88 16 7 N -0.72 -9.92 5.49 -60.29 -0.33 -10.26 16 8 C 0.12 2.12 5.23 -4.04 -0.02 2.09 16 9 C 0.06 1.02 2.35 -26.05 -0.06 0.96 16 10 H 0.05 0.77 7.20 -51.93 -0.37 0.40 16 11 C 0.17 3.87 4.50 -2.44 -0.01 3.86 16 12 N -0.59 -14.38 2.59 -171.48 -0.44 -14.83 16 13 C -0.26 -6.99 9.43 -15.06 -0.14 -7.13 16 14 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 15 C 0.00 0.13 4.88 -17.43 -0.09 0.05 16 16 N -0.91 -26.11 10.98 55.49 0.61 -25.50 16 17 Si 0.90 22.02 29.58 -169.99 -5.03 17.00 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.16 3.18 5.68 -4.14 -0.02 3.16 16 22 C -0.18 -3.14 6.03 -28.31 -0.17 -3.31 16 23 C 0.08 1.23 6.04 34.59 0.21 1.44 16 24 O -0.36 -6.72 9.76 -34.09 -0.33 -7.06 16 25 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 26 H 0.10 0.74 7.84 -52.48 -0.41 0.33 16 27 H 0.11 0.75 8.06 -52.49 -0.42 0.32 16 28 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 29 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 4.44 8.46 -40.82 -0.35 4.10 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.08 2.23 6.24 -51.93 -0.32 1.90 16 36 H 0.04 0.91 8.02 -51.93 -0.42 0.49 16 37 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.05 1.04 7.97 -51.93 -0.41 0.62 16 39 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.46 7.28 -51.93 -0.38 0.08 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -31.78 348.40 -8.06 -39.85 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.26 Total: 2.34 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.62 Total: 3.09 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.17 Total: -50.58 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.24 Total: -16.94 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.78 -8.06 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149331629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.473 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds