Wall clock time and date at job start Tue Mar 31 2020 02:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00164 * 2 1 4 4 C 1.52997 * 109.47679 * 124.99877 * 3 2 1 5 5 C 1.50690 * 109.47630 * 179.97438 * 4 3 2 6 6 O 1.21288 * 119.99766 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00470 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00083 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46992 * 179.97438 * 8 7 5 10 10 H 1.09000 * 108.56790 * 57.94507 * 9 8 7 11 11 C 1.46924 * 108.50771 * 175.82110 * 9 8 7 12 12 N 1.50121 * 106.77164 * 177.84742 * 11 9 8 13 13 C 1.36933 * 120.63541 * 111.38092 * 12 11 9 14 14 H 1.08007 * 120.00077 * 155.66518 * 13 12 11 15 15 C 1.38812 * 120.00186 * 335.67607 * 13 12 11 16 16 N 1.31618 * 119.99894 * 340.62661 * 15 13 12 17 17 Si 1.86803 * 120.00347 * 160.63428 * 15 13 12 18 18 H 1.48498 * 109.47028 * 59.99318 * 17 15 13 19 19 H 1.48497 * 109.47064 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46408 * 299.99460 * 17 15 13 21 21 C 1.43425 * 118.73003 * 291.36256 * 12 11 9 22 22 C 1.55334 * 116.24296 * 89.34900 * 21 12 11 23 23 C 1.55188 * 108.87387 * 319.46124 * 22 21 12 24 24 O 1.39651 * 110.56102 * 322.14227 * 23 22 21 25 25 H 1.07999 * 120.00937 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99667 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99575 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47312 * 4.99686 * 3 2 1 29 29 H 1.09006 * 109.46977 * 244.99868 * 3 2 1 30 30 H 1.09007 * 109.47276 * 59.99582 * 4 3 2 31 31 H 1.09006 * 109.46909 * 300.00033 * 4 3 2 32 32 H 0.97000 * 119.99502 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.47293 * 60.00318 * 8 7 5 34 34 H 1.08996 * 109.47293 * 300.00244 * 8 7 5 35 35 H 1.08997 * 109.98998 * 297.16298 * 11 9 8 36 36 H 1.08995 * 109.98745 * 58.53745 * 11 9 8 37 37 H 0.96999 * 120.00021 * 180.02562 * 16 15 13 38 38 H 1.09000 * 108.12851 * 211.10350 * 21 12 11 39 39 H 1.08998 * 108.12725 * 327.80593 * 21 12 11 40 40 H 1.08992 * 109.57243 * 199.64659 * 22 21 12 41 41 H 1.08995 * 109.56926 * 79.27353 * 22 21 12 42 42 H 1.09001 * 109.25993 * 201.86337 * 23 22 21 43 43 H 1.09000 * 109.26298 * 82.41717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7889 2.6379 1.1812 6 8 3.5710 3.4639 0.3202 7 7 4.7054 2.8870 2.1376 8 6 5.4387 4.1553 2.1368 9 6 6.4092 4.1839 3.3192 10 1 7.0827 3.3308 3.2362 11 6 7.2033 5.4176 3.2411 12 7 8.1013 5.4317 4.4440 13 6 9.4553 5.2811 4.3057 14 1 10.1218 5.6684 5.0621 15 6 9.9713 4.6307 3.1931 16 7 9.2011 3.8385 2.4779 17 14 11.7588 4.8798 2.7111 18 1 12.6376 4.4390 3.8241 19 1 12.0600 4.0801 1.4966 20 1 11.9998 6.3179 2.4298 21 6 7.5141 5.6063 5.7408 22 6 7.0770 4.3102 6.4770 23 6 6.4262 3.3450 5.4507 24 8 5.6616 4.0572 4.5242 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 3.7400 0.5066 1.0921 31 1 2.4772 1.2357 2.1130 32 1 4.8799 2.2262 2.8259 33 1 4.7343 4.9823 2.2254 34 1 5.9970 4.2516 1.2056 35 1 7.8010 5.4189 2.3297 36 1 6.5449 6.2861 3.2575 37 1 9.5618 3.3838 1.7007 38 1 8.2338 6.1281 6.3715 39 1 6.6365 6.2436 5.6326 40 1 6.3543 4.5579 7.2543 41 1 7.9486 3.8331 6.9248 42 1 5.7855 2.6382 5.9780 43 1 7.2088 2.7974 4.9256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149331630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:15 Heat of formation + Delta-G solvation = -42.813114 kcal Electronic energy + Delta-G solvation = -22945.081263 eV Core-core repulsion = 19605.557538 eV Total energy + Delta-G solvation = -3339.523726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.63871 -38.75155 -35.54830 -35.00872 -34.42993 -32.21777 -31.33530 -30.60200 -28.58998 -25.85696 -25.33547 -23.94150 -22.36350 -20.80218 -19.95069 -19.86648 -19.58482 -17.15426 -16.73475 -16.15329 -15.70371 -15.54920 -14.96288 -14.78388 -14.45039 -14.16156 -13.87402 -13.70877 -13.14396 -13.04149 -12.71678 -12.47322 -12.33603 -12.00564 -11.93412 -11.42441 -11.24249 -11.15771 -11.10014 -10.84480 -10.75412 -10.50981 -10.18350 -9.98248 -9.74042 -9.65882 -9.52459 -9.40677 -8.81004 -8.64427 -8.51004 -6.83649 -5.93764 -3.32315 2.10037 2.93077 3.32848 3.39547 3.41475 3.56307 4.42260 4.67289 4.75601 4.84723 5.05263 5.19059 5.22853 5.26985 5.29080 5.55228 5.69310 5.72625 5.80744 5.87305 5.91280 6.01766 6.08258 6.14061 6.32177 6.40511 6.45734 6.47201 6.58186 6.61373 6.65799 6.70053 6.80638 6.92626 6.95466 7.10931 7.31347 7.70117 7.85857 8.12449 8.30739 8.53697 9.05482 9.73694 10.28126 11.15342 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.003974 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.894747 B = 7043.285314 C = 7828.043334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.507 3.493 6 O -0.552 6.552 7 N -0.715 5.715 8 C 0.120 3.880 9 C 0.061 3.939 10 H 0.107 0.893 11 C 0.143 3.857 12 N -0.588 5.588 13 C -0.250 4.250 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.905 3.095 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.161 3.839 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.370 6.370 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.400 0.600 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.019 0.981 37 H 0.256 0.744 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 -6.909 0.048 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.117 4.117 4 C -0.176 4.176 5 C 0.293 3.707 6 O -0.431 6.431 7 N -0.365 5.365 8 C -0.004 4.004 9 C 0.002 3.998 10 H 0.124 0.876 11 C 0.018 3.982 12 N -0.308 5.308 13 C -0.379 4.379 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.553 5.553 17 Si 0.735 3.265 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.032 3.968 22 C -0.213 4.213 23 C -0.011 4.011 24 O -0.288 6.288 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.234 0.766 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.504 -6.278 -0.686 13.123 hybrid contribution 1.308 -0.524 0.202 1.424 sum -10.195 -6.802 -0.484 12.266 Atomic orbital electron populations 1.23859 0.95998 1.01770 1.01786 1.23016 0.96087 0.98502 0.99346 1.20500 0.97830 0.95146 0.98225 1.21608 0.98996 0.96105 1.00910 1.20638 0.79918 0.88825 0.81341 1.90679 1.66284 1.48489 1.37610 1.45971 1.40206 1.20492 1.29844 1.21688 0.94332 0.84994 0.99366 1.22191 0.91365 1.04212 0.82038 0.87559 1.20753 0.91378 0.92664 0.93388 1.44108 1.03242 1.83966 0.99500 1.19225 0.81847 1.29934 1.06887 0.91339 1.24899 0.97863 0.96707 1.00080 1.69855 1.35756 1.29671 1.20028 0.86329 0.84689 0.77780 0.77741 1.21041 1.21629 1.21071 1.20373 0.95673 0.93464 0.87323 1.23583 0.99047 1.00495 0.98215 1.22344 0.94084 0.93179 0.91462 1.87518 1.40387 1.76407 1.24517 0.88645 0.88555 0.87367 0.90780 0.90186 0.88936 0.89015 0.76625 0.92104 0.90469 0.87824 0.96271 0.93417 0.94873 0.95032 0.93188 0.92508 0.93126 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 14.32 29.02 0.42 -1.26 16 2 C -0.15 -1.38 9.52 -36.02 -0.34 -1.72 16 3 C -0.08 -0.87 4.95 -27.89 -0.14 -1.01 16 4 C -0.14 -1.50 5.68 -27.89 -0.16 -1.66 16 5 C 0.51 7.87 7.83 -10.99 -0.09 7.78 16 6 O -0.55 -10.63 15.98 5.55 0.09 -10.54 16 7 N -0.72 -11.29 5.43 -60.30 -0.33 -11.61 16 8 C 0.12 2.23 5.23 -4.04 -0.02 2.21 16 9 C 0.06 1.22 1.95 -29.64 -0.06 1.16 16 10 H 0.11 2.40 5.25 -51.93 -0.27 2.13 16 11 C 0.14 3.23 4.70 -4.93 -0.02 3.21 16 12 N -0.59 -14.04 2.61 -174.49 -0.46 -14.50 16 13 C -0.25 -6.47 9.62 -15.06 -0.14 -6.62 16 14 H 0.07 1.78 7.88 -52.48 -0.41 1.36 16 15 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 16 N -0.91 -23.54 9.57 55.49 0.53 -23.01 16 17 Si 0.90 20.79 29.60 -169.99 -5.03 15.76 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.16 3.38 5.33 -4.43 -0.02 3.36 16 22 C -0.17 -3.19 6.75 -24.33 -0.16 -3.35 16 23 C 0.07 1.24 6.38 38.32 0.24 1.48 16 24 O -0.37 -7.17 9.54 -31.97 -0.30 -7.47 16 25 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 26 H 0.10 0.81 7.84 -52.48 -0.41 0.40 16 27 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 29 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 5.60 8.33 -40.82 -0.34 5.26 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 38 H 0.03 0.69 7.96 -51.93 -0.41 0.27 16 39 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.30 6.66 -51.93 -0.35 0.95 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -28.37 344.55 -8.00 -36.37 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.11 Total: 6.27 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.59 Total: 3.56 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.25 Total: -49.12 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.22 Total: -18.01 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.37 -8.00 -36.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149331630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.443 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds