Wall clock time and date at job start Tue Mar 31 2020 02:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00164 * 2 1 4 4 C 1.52997 * 109.47679 * 124.99877 * 3 2 1 5 5 C 1.50690 * 109.47630 * 179.97438 * 4 3 2 6 6 O 1.21288 * 119.99766 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00470 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00083 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46992 * 179.97438 * 8 7 5 10 10 H 1.09000 * 108.56790 * 57.94507 * 9 8 7 11 11 C 1.46924 * 108.50771 * 175.82110 * 9 8 7 12 12 N 1.50121 * 106.77164 * 177.84742 * 11 9 8 13 13 C 1.36933 * 120.63541 * 111.38092 * 12 11 9 14 14 H 1.08007 * 120.00077 * 155.66518 * 13 12 11 15 15 C 1.38812 * 120.00186 * 335.67607 * 13 12 11 16 16 N 1.31618 * 119.99894 * 340.62661 * 15 13 12 17 17 Si 1.86803 * 120.00347 * 160.63428 * 15 13 12 18 18 H 1.48498 * 109.47028 * 59.99318 * 17 15 13 19 19 H 1.48497 * 109.47064 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46408 * 299.99460 * 17 15 13 21 21 C 1.43425 * 118.73003 * 291.36256 * 12 11 9 22 22 C 1.55334 * 116.24296 * 89.34900 * 21 12 11 23 23 C 1.55188 * 108.87387 * 319.46124 * 22 21 12 24 24 O 1.39651 * 110.56102 * 322.14227 * 23 22 21 25 25 H 1.07999 * 120.00937 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99667 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99575 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47312 * 4.99686 * 3 2 1 29 29 H 1.09006 * 109.46977 * 244.99868 * 3 2 1 30 30 H 1.09007 * 109.47276 * 59.99582 * 4 3 2 31 31 H 1.09006 * 109.46909 * 300.00033 * 4 3 2 32 32 H 0.97000 * 119.99502 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.47293 * 60.00318 * 8 7 5 34 34 H 1.08996 * 109.47293 * 300.00244 * 8 7 5 35 35 H 1.08997 * 109.98998 * 297.16298 * 11 9 8 36 36 H 1.08995 * 109.98745 * 58.53745 * 11 9 8 37 37 H 0.96999 * 120.00021 * 180.02562 * 16 15 13 38 38 H 1.09000 * 108.12851 * 211.10350 * 21 12 11 39 39 H 1.08998 * 108.12725 * 327.80593 * 21 12 11 40 40 H 1.08992 * 109.57243 * 199.64659 * 22 21 12 41 41 H 1.08995 * 109.56926 * 79.27353 * 22 21 12 42 42 H 1.09001 * 109.25993 * 201.86337 * 23 22 21 43 43 H 1.09000 * 109.26298 * 82.41717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7889 2.6379 1.1812 6 8 3.5710 3.4639 0.3202 7 7 4.7054 2.8870 2.1376 8 6 5.4387 4.1553 2.1368 9 6 6.4092 4.1839 3.3192 10 1 7.0827 3.3308 3.2362 11 6 7.2033 5.4176 3.2411 12 7 8.1013 5.4317 4.4440 13 6 9.4553 5.2811 4.3057 14 1 10.1218 5.6684 5.0621 15 6 9.9713 4.6307 3.1931 16 7 9.2011 3.8385 2.4779 17 14 11.7588 4.8798 2.7111 18 1 12.6376 4.4390 3.8241 19 1 12.0600 4.0801 1.4966 20 1 11.9998 6.3179 2.4298 21 6 7.5141 5.6063 5.7408 22 6 7.0770 4.3102 6.4770 23 6 6.4262 3.3450 5.4507 24 8 5.6616 4.0572 4.5242 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 3.7400 0.5066 1.0921 31 1 2.4772 1.2357 2.1130 32 1 4.8799 2.2262 2.8259 33 1 4.7343 4.9823 2.2254 34 1 5.9970 4.2516 1.2056 35 1 7.8010 5.4189 2.3297 36 1 6.5449 6.2861 3.2575 37 1 9.5618 3.3838 1.7007 38 1 8.2338 6.1281 6.3715 39 1 6.6365 6.2436 5.6326 40 1 6.3543 4.5579 7.2543 41 1 7.9486 3.8331 6.9248 42 1 5.7855 2.6382 5.9780 43 1 7.2088 2.7974 4.9256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149331630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:15 Heat of formation + Delta-G solvation = -60.093744 kcal Electronic energy + Delta-G solvation = -22945.830608 eV Core-core repulsion = 19605.557538 eV Total energy + Delta-G solvation = -3340.273070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06207 -40.23043 -36.81351 -36.39886 -35.82371 -33.85911 -33.01970 -31.62794 -30.19725 -27.35396 -27.06848 -25.19092 -23.89567 -22.40341 -21.34418 -21.12322 -20.62740 -18.94435 -18.00188 -17.71372 -17.01124 -16.81891 -16.57033 -16.22889 -15.71859 -15.65234 -15.50391 -14.91808 -14.69039 -14.40508 -14.16803 -13.87863 -13.58001 -13.41542 -13.27555 -13.03499 -12.90556 -12.60868 -12.51260 -12.31201 -11.98236 -11.92964 -11.87202 -11.77487 -11.38190 -11.19167 -10.92842 -10.55769 -10.28534 -10.17807 -10.03397 -8.72091 -7.89818 -5.30408 1.42337 1.48095 1.51961 1.56878 1.69866 2.32025 2.52525 3.11885 3.27421 3.50708 3.78686 4.01607 4.15466 4.21020 4.27537 4.37032 4.42262 4.43318 4.49294 4.57432 4.71080 4.74545 4.77848 4.79832 4.95991 4.98939 5.08084 5.10712 5.18443 5.19037 5.24547 5.34292 5.40432 5.45677 5.52792 5.67902 5.78305 5.94123 6.36101 6.52141 6.62384 7.10455 7.30152 7.82805 8.35928 9.16030 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.003974 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.894747 B = 7043.285314 C = 7828.043334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C -0.078 4.078 4 C -0.125 4.125 5 C 0.503 3.497 6 O -0.594 6.594 7 N -0.710 5.710 8 C 0.132 3.868 9 C 0.081 3.919 10 H 0.086 0.914 11 C 0.144 3.856 12 N -0.602 5.602 13 C -0.265 4.265 14 H 0.063 0.937 15 C -0.036 4.036 16 N -0.917 5.917 17 Si 0.959 3.041 18 H -0.280 1.280 19 H -0.294 1.294 20 H -0.286 1.286 21 C 0.153 3.847 22 C -0.165 4.165 23 C 0.068 3.932 24 O -0.367 6.367 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.411 0.589 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.251 0.749 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.280 -8.453 1.085 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.176 4.176 3 C -0.116 4.116 4 C -0.164 4.164 5 C 0.291 3.709 6 O -0.475 6.475 7 N -0.361 5.361 8 C 0.007 3.993 9 C 0.022 3.978 10 H 0.103 0.897 11 C 0.019 3.981 12 N -0.324 5.324 13 C -0.395 4.395 14 H 0.081 0.919 15 C -0.232 4.232 16 N -0.562 5.562 17 Si 0.789 3.211 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.213 1.213 21 C 0.025 3.975 22 C -0.206 4.206 23 C -0.010 4.010 24 O -0.286 6.286 25 H 0.131 0.869 26 H 0.111 0.889 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.247 0.753 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.546 -7.842 0.389 14.801 hybrid contribution 1.596 0.013 -0.089 1.599 sum -10.950 -7.829 0.300 13.464 Atomic orbital electron populations 1.24042 0.95955 1.02515 1.00530 1.22985 0.96252 0.97957 1.00406 1.20444 0.97558 0.95978 0.97580 1.21635 0.99062 0.93736 1.01993 1.21493 0.79341 0.89923 0.80123 1.90662 1.67476 1.50275 1.39136 1.45891 1.40009 1.19689 1.30470 1.21330 0.93848 0.86382 0.97757 1.21731 0.91133 1.01933 0.83028 0.89653 1.20675 0.91188 0.94020 0.92186 1.44227 1.02959 1.84405 1.00759 1.19371 0.82954 1.30023 1.07127 0.91921 1.25475 1.00802 0.96772 1.00191 1.69984 1.36588 1.29838 1.19829 0.85476 0.81335 0.77196 0.77141 1.20628 1.21977 1.21298 1.20498 0.95582 0.95002 0.86387 1.23496 0.99705 0.98872 0.98518 1.22411 0.94118 0.93385 0.91092 1.87516 1.40103 1.76667 1.24282 0.86855 0.88927 0.85662 0.92301 0.91730 0.86494 0.86669 0.75316 0.92712 0.92311 0.90415 0.95949 0.93957 0.95072 0.94795 0.90325 0.92740 0.89409 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 14.32 67.79 0.97 -1.88 16 2 C -0.16 -2.52 9.52 25.65 0.24 -2.27 16 3 C -0.08 -1.63 4.95 29.85 0.15 -1.48 16 4 C -0.12 -2.48 5.68 29.84 0.17 -2.31 16 5 C 0.50 15.25 7.83 87.65 0.69 15.94 16 6 O -0.59 -23.17 15.98 -3.05 -0.05 -23.22 16 7 N -0.71 -21.86 5.43 -463.07 -2.52 -24.38 16 8 C 0.13 4.95 5.23 86.38 0.45 5.40 16 9 C 0.08 3.26 1.95 28.71 0.06 3.32 16 10 H 0.09 3.90 5.25 -2.39 -0.01 3.88 16 11 C 0.14 6.63 4.70 83.79 0.39 7.02 16 12 N -0.60 -28.94 2.61 -705.98 -1.84 -30.78 16 13 C -0.26 -13.86 9.62 84.03 0.81 -13.05 16 14 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 15 C -0.04 -1.87 4.92 84.86 0.42 -1.45 16 16 N -0.92 -48.29 9.57 21.65 0.21 -48.08 16 17 Si 0.96 43.03 29.60 68.60 2.03 45.06 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 21 C 0.15 6.32 5.33 87.75 0.47 6.79 16 22 C -0.16 -5.75 6.75 32.15 0.22 -5.54 16 23 C 0.07 2.35 6.38 72.73 0.46 2.81 16 24 O -0.37 -13.68 9.54 -137.30 -1.31 -14.99 16 25 H 0.11 1.27 8.06 -2.91 -0.02 1.24 16 26 H 0.09 1.41 7.84 -2.91 -0.02 1.39 16 27 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16 29 H 0.06 1.53 8.10 -2.38 -0.02 1.51 16 30 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.41 10.82 8.33 -92.71 -0.77 10.05 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.08 3.99 6.03 -2.39 -0.01 3.97 16 36 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.25 13.10 8.31 -92.71 -0.77 12.32 16 38 H 0.03 1.27 7.96 -2.39 -0.02 1.25 16 39 H 0.03 1.36 7.98 -2.39 -0.02 1.34 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.04 1.50 6.66 -2.39 -0.02 1.48 16 Total: -1.00 -61.33 344.55 2.22 -59.11 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.21 Total: 23.99 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.49 Total: 13.30 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.15 Total: -103.24 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.36 Total: -38.21 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -61.33 2.22 -59.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149331630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.986 kcal (2) G-P(sol) polarization free energy of solvation -61.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds