Wall clock time and date at job start Tue Mar 31 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00045 * 2 1 4 4 C 1.50707 * 120.00442 * 179.97438 * 2 1 3 5 5 H 1.09001 * 110.33013 * 133.48034 * 4 2 1 6 6 O 1.44435 * 110.36647 * 11.23565 * 4 2 1 7 7 C 1.44427 * 105.27058 * 200.65777 * 6 4 2 8 8 C 1.54476 * 104.80389 * 40.51298 * 7 6 4 9 9 C 1.54509 * 104.18724 * 335.94769 * 8 7 6 10 10 H 1.08994 * 110.51580 * 241.43012 * 9 8 7 11 11 C 1.50703 * 110.50868 * 118.71188 * 9 8 7 12 12 O 1.21284 * 119.99984 * 322.55505 * 11 9 8 13 13 N 1.34774 * 119.99719 * 142.55266 * 11 9 8 14 14 C 1.46504 * 119.99850 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.46999 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47344 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47420 * 179.97438 * 16 15 14 18 18 C 1.36941 * 119.99866 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00424 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99960 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99948 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00095 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46946 * 90.00000 * 22 20 18 24 24 H 1.48495 * 109.46781 * 210.00047 * 22 20 18 25 25 H 1.48493 * 109.46869 * 330.00016 * 22 20 18 26 26 H 1.07992 * 120.00213 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99628 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47373 * 242.42767 * 3 2 1 29 29 H 1.08999 * 109.47104 * 2.43300 * 3 2 1 30 30 H 1.09007 * 109.47269 * 122.43211 * 3 2 1 31 31 H 1.09002 * 110.37008 * 281.68081 * 7 6 4 32 32 H 1.09002 * 110.36870 * 159.34636 * 7 6 4 33 33 H 1.08999 * 110.51157 * 94.66713 * 8 7 6 34 34 H 1.09007 * 110.50703 * 217.23691 * 8 7 6 35 35 H 0.96999 * 120.00173 * 359.97438 * 13 11 9 36 36 H 1.09003 * 109.46636 * 299.99521 * 14 13 11 37 37 H 1.08992 * 109.47399 * 59.99790 * 14 13 11 38 38 H 1.09009 * 109.47325 * 299.99635 * 15 14 13 39 39 H 1.08998 * 109.47486 * 59.99340 * 15 14 13 40 40 H 1.08999 * 109.47027 * 299.99652 * 16 15 14 41 41 H 1.08998 * 109.47289 * 59.99316 * 16 15 14 42 42 H 0.96996 * 120.00060 * 359.97438 * 17 16 15 43 43 H 0.96992 * 120.00001 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 2.8620 -1.2817 -0.7411 6 8 1.1648 -2.4047 -0.2628 7 6 1.8418 -3.5778 0.2388 8 6 2.4896 -3.1227 1.5653 9 6 2.6420 -1.5933 1.4072 10 1 3.6925 -1.3070 1.4561 11 6 1.8466 -0.8715 2.4644 12 8 0.7674 -1.3026 2.8112 13 7 2.3348 0.2531 3.0243 14 6 1.5619 0.9545 4.0524 15 6 2.3357 2.1894 4.5183 16 6 1.5283 2.9224 5.5915 17 7 2.2696 4.1044 6.0381 18 6 1.7397 4.9214 7.0009 19 1 0.7753 4.6946 7.4308 20 6 2.4423 6.0412 7.4245 21 7 3.6179 6.3175 6.9010 22 14 1.7193 7.1561 8.7374 23 1 2.1500 6.6855 10.0784 24 1 2.1962 8.5461 8.5239 25 1 0.2371 7.1229 8.6536 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 2.6571 1.3820 -0.9109 29 1 1.3560 2.1331 0.0436 30 1 2.7225 1.3442 0.8674 31 1 2.6074 -3.9041 -0.4651 32 1 1.1264 -4.3796 0.4213 33 1 1.8392 -3.3568 2.4080 34 1 3.4648 -3.5923 1.6948 35 1 3.1981 0.5976 2.7471 36 1 0.6015 1.2619 3.6383 37 1 1.3961 0.2891 4.8995 38 1 3.2959 1.8817 4.9324 39 1 2.5020 2.8550 3.6713 40 1 0.5684 3.2302 5.1770 41 1 1.3617 2.2570 6.4386 42 1 3.1356 4.3084 5.6517 43 1 4.1087 7.1001 7.1966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168095709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:25 Heat of formation + Delta-G solvation = -59.007571 kcal Electronic energy + Delta-G solvation = -22379.962090 eV Core-core repulsion = 19039.736120 eV Total energy + Delta-G solvation = -3340.225970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84642 -38.58985 -35.99941 -35.25388 -34.29277 -32.65650 -31.84677 -29.70697 -28.84051 -27.29085 -25.52488 -23.96903 -22.83583 -21.89840 -21.21198 -20.21199 -18.78554 -17.48032 -17.02012 -16.61917 -16.13391 -15.78600 -15.51859 -15.33075 -14.57304 -14.42782 -14.09271 -13.73819 -13.33897 -13.29042 -13.23916 -13.02395 -12.67410 -12.23748 -12.21420 -11.90672 -11.63406 -11.51710 -11.41767 -11.11128 -10.95177 -10.92390 -10.78172 -10.62313 -10.17874 -10.08623 -9.79111 -9.66083 -9.19411 -8.96600 -8.88829 -6.94562 -5.78380 -3.07233 2.08701 2.57706 3.12204 3.43299 3.48457 3.50219 3.54468 4.11949 4.42466 4.52454 4.58428 4.72819 4.80618 4.90239 4.99687 5.03624 5.12380 5.25990 5.30956 5.36067 5.41592 5.45591 5.50067 5.56684 5.62979 5.75480 5.84602 5.91104 6.00357 6.06704 6.18458 6.31205 6.35902 6.48356 6.53854 6.78042 6.81832 6.82323 7.49158 7.69301 8.23050 8.40738 9.51851 10.08856 10.43581 11.44688 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.002835 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.524956 B = 9875.170730 C =10109.200808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.159 4.159 3 C -0.112 4.112 4 C 0.133 3.867 5 H 0.084 0.916 6 O -0.360 6.360 7 C 0.049 3.951 8 C -0.142 4.142 9 C -0.139 4.139 10 H 0.102 0.898 11 C 0.527 3.473 12 O -0.531 6.531 13 N -0.725 5.725 14 C 0.124 3.876 15 C -0.137 4.137 16 C 0.157 3.843 17 N -0.734 5.734 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -18.546 -16.664 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C -0.169 4.169 4 C 0.075 3.925 5 H 0.102 0.898 6 O -0.278 6.278 7 C -0.028 4.028 8 C -0.180 4.180 9 C -0.160 4.160 10 H 0.120 0.880 11 C 0.313 3.687 12 O -0.407 6.407 13 N -0.377 5.377 14 C 0.000 4.000 15 C -0.175 4.175 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.232 0.768 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.217 0.783 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.269 -18.761 -16.372 24.901 hybrid contribution 0.666 0.929 0.640 1.310 sum 0.398 -17.831 -15.732 23.783 Atomic orbital electron populations 1.23795 0.95338 1.02312 0.96509 1.21439 0.95898 0.93788 1.04749 1.20818 1.00430 0.93758 1.01916 1.21640 0.91393 0.86583 0.92924 0.89830 1.89164 1.41415 1.15722 1.81527 1.23383 0.96741 0.89341 0.93365 1.22946 1.02368 0.92379 1.00273 1.22795 1.00838 0.97014 0.95403 0.88015 1.20020 0.86421 0.80625 0.81673 1.90698 1.21389 1.66322 1.62296 1.46138 1.23325 1.26763 1.41491 1.21327 0.95011 0.93378 0.90249 1.21937 0.99817 0.95602 1.00145 1.20515 0.94082 0.89062 0.93504 1.42336 1.22127 1.26249 1.47081 1.19250 1.01728 1.03217 1.12891 0.91107 1.24753 0.96931 0.98904 1.00474 1.69658 1.13731 1.29056 1.45918 0.86166 0.78265 0.80102 0.81543 1.21685 1.21739 1.20707 0.88444 0.87363 0.91688 0.91322 0.91662 0.92104 0.88733 0.89102 0.89895 0.76779 0.91438 0.91520 0.91375 0.91346 0.96077 0.96112 0.78317 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 13.45 29.02 0.39 -1.31 16 2 C -0.16 -1.69 3.76 -101.06 -0.38 -2.07 16 3 C -0.11 -1.00 10.08 36.01 0.36 -0.64 16 4 C 0.13 1.28 3.54 -26.93 -0.10 1.19 16 5 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 6 O -0.36 -4.05 9.87 -35.23 -0.35 -4.40 16 7 C 0.05 0.39 7.63 37.93 0.29 0.68 16 8 C -0.14 -1.18 6.58 -25.16 -0.17 -1.34 16 9 C -0.14 -1.26 3.44 -90.03 -0.31 -1.57 16 10 H 0.10 0.64 8.09 -51.93 -0.42 0.22 16 11 C 0.53 6.55 4.99 -10.99 -0.05 6.49 16 12 O -0.53 -8.72 15.93 5.55 0.09 -8.63 16 13 N -0.73 -8.19 4.70 -60.29 -0.28 -8.47 16 14 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 15 C -0.14 -2.06 5.44 -26.73 -0.15 -2.21 16 16 C 0.16 3.12 6.26 -4.04 -0.03 3.10 16 17 N -0.73 -18.65 5.60 -59.91 -0.34 -18.98 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 22 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.10 1.07 7.84 -52.49 -0.41 0.66 16 27 H 0.11 1.43 6.96 -52.48 -0.37 1.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 30 H 0.06 0.55 6.28 -51.93 -0.33 0.22 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.94 7.11 -51.93 -0.37 0.58 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 3.51 7.58 -40.82 -0.31 3.20 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 10.10 7.67 -40.82 -0.31 9.79 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -33.84 351.38 -7.40 -41.24 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.11 Total: 7.51 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.40 Total: -3.49 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.11 Total: -55.00 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.26 Total: -13.03 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.84 -7.40 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168095709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.766 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds