Wall clock time and date at job start Tue Mar 31 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00045 * 2 1 4 4 C 1.50707 * 120.00442 * 179.97438 * 2 1 3 5 5 H 1.09001 * 110.33013 * 133.48034 * 4 2 1 6 6 O 1.44435 * 110.36647 * 11.23565 * 4 2 1 7 7 C 1.44427 * 105.27058 * 200.65777 * 6 4 2 8 8 C 1.54476 * 104.80389 * 40.51298 * 7 6 4 9 9 C 1.54509 * 104.18724 * 335.94769 * 8 7 6 10 10 H 1.08994 * 110.51580 * 241.43012 * 9 8 7 11 11 C 1.50703 * 110.50868 * 118.71188 * 9 8 7 12 12 O 1.21284 * 119.99984 * 322.55505 * 11 9 8 13 13 N 1.34774 * 119.99719 * 142.55266 * 11 9 8 14 14 C 1.46504 * 119.99850 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.46999 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47344 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47420 * 179.97438 * 16 15 14 18 18 C 1.36941 * 119.99866 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00424 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99960 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99948 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00095 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46946 * 90.00000 * 22 20 18 24 24 H 1.48495 * 109.46781 * 210.00047 * 22 20 18 25 25 H 1.48493 * 109.46869 * 330.00016 * 22 20 18 26 26 H 1.07992 * 120.00213 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99628 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47373 * 242.42767 * 3 2 1 29 29 H 1.08999 * 109.47104 * 2.43300 * 3 2 1 30 30 H 1.09007 * 109.47269 * 122.43211 * 3 2 1 31 31 H 1.09002 * 110.37008 * 281.68081 * 7 6 4 32 32 H 1.09002 * 110.36870 * 159.34636 * 7 6 4 33 33 H 1.08999 * 110.51157 * 94.66713 * 8 7 6 34 34 H 1.09007 * 110.50703 * 217.23691 * 8 7 6 35 35 H 0.96999 * 120.00173 * 359.97438 * 13 11 9 36 36 H 1.09003 * 109.46636 * 299.99521 * 14 13 11 37 37 H 1.08992 * 109.47399 * 59.99790 * 14 13 11 38 38 H 1.09009 * 109.47325 * 299.99635 * 15 14 13 39 39 H 1.08998 * 109.47486 * 59.99340 * 15 14 13 40 40 H 1.08999 * 109.47027 * 299.99652 * 16 15 14 41 41 H 1.08998 * 109.47289 * 59.99316 * 16 15 14 42 42 H 0.96996 * 120.00060 * 359.97438 * 17 16 15 43 43 H 0.96992 * 120.00001 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 2.8620 -1.2817 -0.7411 6 8 1.1648 -2.4047 -0.2628 7 6 1.8418 -3.5778 0.2388 8 6 2.4896 -3.1227 1.5653 9 6 2.6420 -1.5933 1.4072 10 1 3.6925 -1.3070 1.4561 11 6 1.8466 -0.8715 2.4644 12 8 0.7674 -1.3026 2.8112 13 7 2.3348 0.2531 3.0243 14 6 1.5619 0.9545 4.0524 15 6 2.3357 2.1894 4.5183 16 6 1.5283 2.9224 5.5915 17 7 2.2696 4.1044 6.0381 18 6 1.7397 4.9214 7.0009 19 1 0.7753 4.6946 7.4308 20 6 2.4423 6.0412 7.4245 21 7 3.6179 6.3175 6.9010 22 14 1.7193 7.1561 8.7374 23 1 2.1500 6.6855 10.0784 24 1 2.1962 8.5461 8.5239 25 1 0.2371 7.1229 8.6536 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 2.6571 1.3820 -0.9109 29 1 1.3560 2.1331 0.0436 30 1 2.7225 1.3442 0.8674 31 1 2.6074 -3.9041 -0.4651 32 1 1.1264 -4.3796 0.4213 33 1 1.8392 -3.3568 2.4080 34 1 3.4648 -3.5923 1.6948 35 1 3.1981 0.5976 2.7471 36 1 0.6015 1.2619 3.6383 37 1 1.3961 0.2891 4.8995 38 1 3.2959 1.8817 4.9324 39 1 2.5020 2.8550 3.6713 40 1 0.5684 3.2302 5.1770 41 1 1.3617 2.2570 6.4386 42 1 3.1356 4.3084 5.6517 43 1 4.1087 7.1001 7.1966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168095709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:25 Heat of formation + Delta-G solvation = -83.006444 kcal Electronic energy + Delta-G solvation = -22381.002759 eV Core-core repulsion = 19039.736120 eV Total energy + Delta-G solvation = -3341.266639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68310 -39.50415 -37.47216 -36.12093 -35.77272 -33.83463 -33.21390 -31.25934 -29.65154 -28.07687 -27.08391 -25.14498 -24.13436 -22.87890 -22.57131 -21.17427 -19.67916 -19.11632 -18.21289 -17.49046 -17.10026 -16.80204 -16.59615 -16.45539 -16.06306 -15.55086 -15.29597 -15.13339 -14.79172 -14.54411 -14.16423 -13.96424 -13.82399 -13.32241 -13.12999 -12.92156 -12.81796 -12.61019 -12.55969 -12.42254 -12.28292 -12.12971 -12.07944 -12.03518 -11.84945 -11.78225 -10.95341 -10.90904 -10.68861 -10.11970 -9.92066 -9.02524 -7.97332 -5.26380 1.23091 1.47497 1.48919 1.57567 1.62936 2.16201 2.55888 2.88318 3.36538 3.39854 3.67658 3.76728 3.82462 4.00909 4.08773 4.18147 4.23943 4.29056 4.29792 4.37782 4.45773 4.58961 4.67897 4.72733 4.73653 4.81911 4.84229 4.87484 4.90847 5.00317 5.12157 5.14149 5.28657 5.31224 5.45904 5.48256 5.59345 5.73240 6.05096 6.25693 6.59042 7.29763 7.32247 8.06551 8.30966 9.26131 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.002835 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.524956 B = 9875.170730 C =10109.200808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C -0.113 4.113 4 C 0.127 3.873 5 H 0.115 0.885 6 O -0.391 6.391 7 C 0.044 3.956 8 C -0.140 4.140 9 C -0.134 4.134 10 H 0.141 0.859 11 C 0.523 3.477 12 O -0.577 6.577 13 N -0.714 5.714 14 C 0.137 3.863 15 C -0.116 4.116 16 C 0.152 3.848 17 N -0.746 5.746 18 C -0.250 4.250 19 H 0.073 0.927 20 C -0.073 4.073 21 N -0.967 5.967 22 Si 0.974 3.026 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.271 1.271 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.414 0.586 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.376 0.624 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 -19.077 -17.334 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.070 3.930 5 H 0.133 0.867 6 O -0.310 6.310 7 C -0.032 4.032 8 C -0.178 4.178 9 C -0.156 4.156 10 H 0.159 0.841 11 C 0.311 3.689 12 O -0.456 6.456 13 N -0.367 5.367 14 C 0.012 3.988 15 C -0.154 4.154 16 C 0.025 3.975 17 N -0.389 5.389 18 C -0.382 4.382 19 H 0.091 0.909 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.196 1.196 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.209 0.791 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.296 -19.316 -17.057 25.802 hybrid contribution 0.149 1.028 0.830 1.329 sum 1.445 -18.288 -16.227 24.492 Atomic orbital electron populations 1.23699 0.96259 1.01383 0.99593 1.21808 0.95633 0.95386 1.02155 1.20870 1.00357 0.92322 1.03405 1.21892 0.91671 0.85549 0.93933 0.86720 1.89149 1.42926 1.17059 1.81902 1.23587 0.97334 0.88437 0.93888 1.22968 1.03486 0.92037 0.99265 1.22898 1.02151 0.97035 0.93508 0.84104 1.20692 0.86047 0.80391 0.81810 1.90686 1.23617 1.67483 1.63843 1.45984 1.23670 1.26363 1.40643 1.21003 0.94579 0.92684 0.90553 1.21685 0.99302 0.95643 0.98798 1.20666 0.94283 0.87724 0.94808 1.42523 1.22205 1.27444 1.46708 1.19632 1.01789 1.03630 1.13164 0.90894 1.25567 0.97521 1.00569 1.02919 1.69797 1.14984 1.29567 1.47449 0.85141 0.77974 0.77820 0.78838 1.21281 1.21900 1.19617 0.88457 0.89457 0.89485 0.92249 0.90710 0.89212 0.88930 0.91902 0.86599 0.74919 0.92671 0.92431 0.90602 0.90582 0.96301 0.96249 0.79144 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 13.45 67.78 0.91 -3.35 16 2 C -0.15 -3.01 3.76 -16.48 -0.06 -3.07 16 3 C -0.11 -1.76 10.08 71.24 0.72 -1.05 16 4 C 0.13 2.15 3.54 30.46 0.11 2.26 16 5 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 6 O -0.39 -8.44 9.87 -148.98 -1.47 -9.91 16 7 C 0.04 0.63 7.63 72.48 0.55 1.18 16 8 C -0.14 -2.00 6.58 31.61 0.21 -1.79 16 9 C -0.13 -2.07 3.44 -10.41 -0.04 -2.10 16 10 H 0.14 1.07 8.09 -2.39 -0.02 1.05 16 11 C 0.52 12.34 4.99 87.66 0.44 12.78 16 12 O -0.58 -19.21 15.93 -3.04 -0.05 -19.26 16 13 N -0.71 -14.79 4.70 -463.06 -2.17 -16.96 16 14 C 0.14 3.59 5.67 86.38 0.49 4.08 16 15 C -0.12 -3.35 5.44 30.59 0.17 -3.18 16 16 C 0.15 6.00 6.26 86.38 0.54 6.54 16 17 N -0.75 -37.76 5.60 -343.46 -1.92 -39.69 16 18 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 22 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H 0.10 2.28 7.84 -2.91 -0.02 2.25 16 27 H 0.09 2.49 6.96 -2.91 -0.02 2.47 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.04 7.79 -2.39 -0.02 1.03 16 30 H 0.07 1.02 6.28 -2.38 -0.01 1.01 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.28 7.11 -2.39 -0.02 1.26 16 34 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.41 6.00 7.58 -92.71 -0.70 5.29 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.38 19.81 7.67 -92.71 -0.71 19.10 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -74.16 351.38 1.62 -72.54 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -0.41 Total: 28.24 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.34 Total: -4.72 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.82 Total: -114.99 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.52 Total: -29.17 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.16 1.62 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168095709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.471 kcal (2) G-P(sol) polarization free energy of solvation -74.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds