Wall clock time and date at job start Tue Mar 31 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 120.00163 * 2 1 4 4 O 1.42903 * 109.46993 * 135.00040 * 3 2 1 5 5 C 1.42905 * 113.99594 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46627 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47000 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.47016 * 125.64953 * 359.74753 * 10 8 7 12 12 C 1.54324 * 107.26889 * 181.02636 * 11 10 8 13 13 C 1.55156 * 102.94413 * 22.19488 * 12 11 10 14 14 H 1.08998 * 111.00639 * 82.57314 * 13 12 11 15 15 N 1.46505 * 111.00176 * 206.38750 * 13 12 11 16 16 C 1.36932 * 119.99942 * 273.54065 * 15 13 12 17 17 H 1.08005 * 120.00292 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00314 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99634 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47433 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46818 * 120.00401 * 20 18 16 23 23 H 1.48500 * 109.46996 * 240.00136 * 20 18 16 24 24 C 1.47426 * 125.64311 * 179.44245 * 10 8 7 25 25 H 1.07998 * 120.00023 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99895 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00023 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47038 * 15.00322 * 3 2 1 29 29 H 1.08995 * 109.47201 * 255.00169 * 3 2 1 30 30 H 1.08995 * 109.46862 * 60.00194 * 5 4 3 31 31 H 1.09001 * 109.46599 * 299.99766 * 5 4 3 32 32 H 1.09000 * 109.47849 * 59.99872 * 6 5 4 33 33 H 1.08998 * 109.47443 * 299.99739 * 6 5 4 34 34 H 1.09009 * 109.46730 * 59.99606 * 7 6 5 35 35 H 1.08998 * 109.46846 * 300.00150 * 7 6 5 36 36 H 1.09004 * 109.88101 * 300.43815 * 11 10 8 37 37 H 1.08997 * 109.88649 * 61.45491 * 11 10 8 38 38 H 1.09003 * 110.72012 * 140.55453 * 12 11 10 39 39 H 1.08998 * 110.72297 * 263.82648 * 12 11 10 40 40 H 0.97000 * 120.00179 * 93.54593 * 15 13 12 41 41 H 0.96997 * 119.99621 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36638 * 274.74255 * 24 10 8 43 43 H 1.09000 * 110.36899 * 37.07072 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4353 1.0328 6 6 5.0107 2.2540 2.0776 7 6 5.8473 3.5321 2.1630 8 6 6.9333 3.3538 3.1926 9 8 7.0284 2.3076 3.7987 10 7 7.7950 4.3591 3.4441 11 6 7.7930 5.6741 2.7866 12 6 8.9693 6.4819 3.3742 13 6 9.9118 5.3766 3.9196 14 1 10.5359 4.9681 3.1248 15 7 10.7341 5.8841 5.0208 16 6 11.9197 6.5156 4.7553 17 1 12.2486 6.6400 3.7341 18 6 12.6987 6.9970 5.7986 19 7 12.2977 6.8459 7.0431 20 14 14.3157 7.8591 5.4363 21 1 14.5366 7.9006 3.9685 22 1 14.2681 9.2446 5.9686 23 1 15.4277 7.1180 6.0839 24 6 8.8918 4.3245 4.4287 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3856 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 3.2678 3.2694 1.3205 31 1 4.3580 2.6407 0.0616 32 1 5.6506 1.4199 1.7896 33 1 4.5608 2.0482 3.0489 34 1 5.2076 4.3665 2.4509 35 1 6.2972 3.7375 1.1917 36 1 7.9277 5.5514 1.7119 37 1 6.8520 6.1868 2.9860 38 1 9.4654 7.0622 2.5961 39 1 8.6273 7.1299 4.1811 40 1 10.4387 5.7728 5.9380 41 1 12.8422 7.1820 7.7722 42 1 8.5229 4.5976 5.4173 43 1 9.3484 3.3350 4.4532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181890300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:47 Heat of formation + Delta-G solvation = -55.537836 kcal Electronic energy + Delta-G solvation = -21228.050144 eV Core-core repulsion = 17887.974633 eV Total energy + Delta-G solvation = -3340.075511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88248 -38.49939 -37.36381 -34.70912 -34.15679 -33.25382 -31.51472 -29.57402 -28.49831 -27.10815 -25.66051 -23.71591 -22.85435 -21.82570 -20.28158 -20.09822 -19.00021 -17.37724 -17.14273 -16.86708 -16.67838 -16.09975 -15.53671 -15.21107 -14.78558 -14.33070 -14.19339 -13.60010 -13.45265 -13.23488 -13.01543 -12.77053 -12.51640 -12.39289 -12.10711 -11.91375 -11.65639 -11.45826 -11.25769 -11.19191 -11.10822 -10.88174 -10.71086 -10.32560 -10.19882 -10.05833 -9.81090 -9.70328 -9.66948 -8.99058 -8.42683 -7.07277 -5.84767 -3.15475 1.73803 2.75979 3.03501 3.39084 3.44659 3.47142 3.52368 4.46035 4.52531 4.57997 4.68575 4.73296 4.92613 4.95481 5.01771 5.02834 5.11305 5.13856 5.18882 5.30670 5.36039 5.39689 5.44809 5.55362 5.59147 5.74323 5.91926 5.95646 6.08249 6.12208 6.14217 6.22477 6.23221 6.35624 6.53176 6.58766 6.88610 6.88903 7.63487 7.71920 8.30061 8.33018 9.44331 9.98367 10.33253 11.37507 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.066904 B = 0.002162 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.409530 B =12945.347176 C =13143.681438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.384 6.384 5 C 0.063 3.937 6 C -0.104 4.104 7 C -0.132 4.132 8 C 0.525 3.475 9 O -0.545 6.545 10 N -0.615 5.615 11 C 0.101 3.899 12 C -0.155 4.155 13 C 0.171 3.829 14 H 0.063 0.937 15 N -0.715 5.715 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.099 3.901 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.068 0.932 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.651 -6.456 -15.488 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.014 4.014 6 C -0.142 4.142 7 C -0.172 4.172 8 C 0.314 3.686 9 O -0.423 6.423 10 N -0.349 5.349 11 C -0.022 4.022 12 C -0.197 4.197 13 C 0.060 3.940 14 H 0.081 0.919 15 N -0.356 5.356 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.024 4.024 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.433 -7.156 -15.119 26.407 hybrid contribution 0.703 0.898 -0.049 1.142 sum -19.730 -6.258 -15.168 25.661 Atomic orbital electron populations 1.23845 0.95566 1.02294 1.00186 1.22770 0.95663 0.98312 1.00134 1.21535 0.88991 0.95834 0.92512 1.87928 1.44593 1.37343 1.60439 1.22531 0.92836 0.87061 0.98931 1.21220 0.95775 0.97431 0.99727 1.21503 0.96561 0.99826 0.99312 1.20171 0.82063 0.82615 0.83797 1.90713 1.72987 1.26966 1.51590 1.48495 1.31715 1.14375 1.40304 1.22103 0.99957 0.83348 0.96799 1.23417 0.95567 0.99458 1.01225 1.21346 0.90116 0.90607 0.91977 0.91893 1.42268 1.21721 1.68076 1.03519 1.19255 0.96185 1.29267 0.92829 0.90909 1.24781 0.99145 1.01567 0.95198 1.69675 1.38944 1.51295 0.97810 0.86092 0.83529 0.78998 0.77378 1.20490 1.21805 1.21772 1.22571 0.87032 1.01061 0.91783 0.88438 0.87765 0.86513 0.92811 0.92345 0.93196 0.93166 0.90214 0.90234 0.88881 0.88841 0.91890 0.92037 0.90709 0.90524 0.77927 0.93388 0.91333 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 14.31 29.02 0.42 -0.67 16 2 C -0.15 -1.12 9.89 -36.02 -0.36 -1.47 16 3 C 0.09 0.68 6.35 36.01 0.23 0.90 16 4 O -0.38 -4.03 10.33 -35.23 -0.36 -4.39 16 5 C 0.06 0.54 5.94 37.16 0.22 0.76 16 6 C -0.10 -1.10 4.87 -26.73 -0.13 -1.23 16 7 C -0.13 -1.32 4.89 -27.88 -0.14 -1.46 16 8 C 0.53 7.84 7.85 -10.98 -0.09 7.75 16 9 O -0.54 -10.30 16.24 5.55 0.09 -10.21 16 10 N -0.61 -9.24 3.32 -170.38 -0.57 -9.81 16 11 C 0.10 1.26 6.48 -3.07 -0.02 1.24 16 12 C -0.16 -2.44 6.64 -24.90 -0.17 -2.61 16 13 C 0.17 3.26 3.70 -65.66 -0.24 3.02 16 14 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 15 N -0.72 -17.29 5.28 -51.23 -0.27 -17.56 16 16 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.10 1.75 6.53 -2.41 -0.02 1.73 16 25 H 0.10 0.49 7.90 -52.49 -0.41 0.08 16 26 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 27 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.05 0.35 7.86 -51.93 -0.41 -0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.39 9.99 7.71 -40.82 -0.31 9.67 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 43 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -32.10 361.42 -7.93 -40.02 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.43 Total: 5.58 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.53 Total: 0.89 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.11 Total: -54.14 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.27 Total: -14.60 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.10 -7.93 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181890300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.514 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds