Wall clock time and date at job start Tue Mar 31 2020 02:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47000 * 2 1 4 4 O 1.42902 * 109.46942 * 120.00363 * 2 1 3 5 5 C 1.42897 * 113.99646 * 150.00286 * 4 2 1 6 6 C 1.50702 * 109.46995 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99828 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00249 * 179.97438 * 6 5 4 9 9 C 1.47342 * 125.52130 * 359.97062 * 8 6 5 10 10 C 1.54955 * 104.90129 * 156.74249 * 9 8 6 11 11 C 1.54796 * 101.45313 * 37.25784 * 10 9 8 12 12 H 1.08989 * 112.84650 * 86.23480 * 11 10 9 13 13 C 1.53514 * 109.68513 * 212.92715 * 11 10 9 14 14 N 1.46653 * 107.22312 * 84.72850 * 13 11 10 15 15 C 1.36935 * 125.28841 * 197.47095 * 14 13 11 16 16 H 1.07994 * 119.99994 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99726 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00042 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99802 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47294 * 59.99922 * 19 17 15 21 21 H 1.48498 * 109.47173 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47191 * 299.99748 * 19 17 15 23 23 C 1.46949 * 109.16835 * 17.46624 * 14 13 11 24 24 C 1.48505 * 125.37893 * 180.66416 * 8 6 5 25 25 H 1.09007 * 112.73619 * 56.89098 * 24 8 6 26 26 H 1.08997 * 109.47073 * 299.99551 * 1 2 3 27 27 H 1.08997 * 109.47453 * 60.00005 * 1 2 3 28 28 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47073 * 240.00449 * 2 1 3 30 30 H 1.09000 * 109.46978 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47013 * 300.00264 * 3 2 1 32 32 H 1.09002 * 109.46626 * 59.99867 * 3 2 1 33 33 H 1.08991 * 109.47609 * 59.99837 * 5 4 2 34 34 H 1.08997 * 109.47147 * 299.98946 * 5 4 2 35 35 H 1.09000 * 110.35469 * 37.89349 * 9 8 6 36 36 H 1.08993 * 110.44869 * 275.64364 * 9 8 6 37 37 H 1.08993 * 111.02671 * 279.21676 * 10 9 8 38 38 H 1.08990 * 111.03032 * 155.29427 * 10 9 8 39 39 H 1.09002 * 109.91762 * 204.17972 * 13 11 10 40 40 H 1.09002 * 109.91557 * 325.27727 * 13 11 10 41 41 H 0.97003 * 120.00235 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.65076 * 238.24258 * 23 14 13 43 43 H 1.09002 * 109.68179 * 117.71071 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9885 6 6 3.6699 -1.9979 2.2748 7 8 2.9501 -1.9271 3.2484 8 7 4.8309 -2.6789 2.3433 9 6 5.7935 -2.8430 1.2398 10 6 7.1474 -3.1392 1.9329 11 6 6.6970 -4.0199 3.1236 12 1 6.6210 -5.0757 2.8641 13 6 7.6136 -3.7678 4.3290 14 7 7.0912 -2.5923 5.0334 15 6 7.7870 -1.8408 5.9424 16 1 8.8057 -2.0999 6.1902 17 6 7.1829 -0.7460 6.5453 18 7 5.9416 -0.4301 6.2428 19 14 8.1318 0.2786 7.7858 20 1 9.3401 0.8479 7.1367 21 1 7.2694 1.3821 8.2794 22 1 8.5406 -0.5792 8.9270 23 6 5.7054 -2.3513 4.6080 24 6 5.3375 -3.3965 3.5407 25 1 4.6386 -4.1478 3.9086 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 4.0199 -0.5874 0.7125 34 1 3.1809 -2.0707 0.1986 35 1 5.8598 -1.9256 0.6550 36 1 5.5032 -3.6781 0.6024 37 1 7.6174 -2.2200 2.2821 38 1 7.8141 -3.6900 1.2695 39 1 7.6021 -4.6332 4.9916 40 1 8.6307 -3.5748 3.9880 41 1 5.5193 0.3347 6.6644 42 1 5.6203 -1.3497 4.1865 43 1 5.0368 -2.4482 5.4634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187124691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:00 Heat of formation + Delta-G solvation = -46.056982 kcal Electronic energy + Delta-G solvation = -23324.722750 eV Core-core repulsion = 19985.058360 eV Total energy + Delta-G solvation = -3339.664390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01458 -38.55184 -37.24733 -34.82519 -32.80568 -32.20279 -30.61282 -29.10478 -27.68562 -27.25662 -26.16681 -24.39441 -22.54051 -21.40335 -20.53303 -19.62232 -18.63125 -17.07829 -16.90923 -16.52429 -15.86001 -15.33309 -15.16391 -14.49973 -14.25130 -14.02253 -13.68400 -13.40630 -12.90544 -12.79916 -12.67398 -12.47332 -12.30038 -12.11595 -11.94379 -11.70801 -11.49231 -11.40044 -11.13771 -10.95391 -10.81208 -10.72714 -10.50719 -10.19909 -10.00725 -9.83987 -9.66888 -9.64281 -9.25679 -8.54058 -8.15859 -6.76273 -5.61970 -2.98995 2.94331 3.08356 3.44369 3.48251 3.51058 3.94790 4.54751 4.62910 4.81229 4.84493 4.91624 5.04702 5.10656 5.12947 5.20308 5.33743 5.47085 5.49275 5.55412 5.57570 5.60953 5.70410 5.72144 5.73454 5.83101 5.93958 6.06953 6.07929 6.12924 6.21188 6.40309 6.58384 6.61876 6.64395 6.88139 7.15152 7.63346 7.68095 7.95734 7.99733 8.34808 8.65614 9.28028 9.89323 10.52929 11.47577 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004977 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.399739 B = 5624.264904 C = 6708.720938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.355 6.355 5 C 0.052 3.948 6 C 0.525 3.475 7 O -0.507 6.507 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.120 4.120 11 C -0.112 4.112 12 H 0.087 0.913 13 C 0.145 3.855 14 N -0.602 5.602 15 C -0.236 4.236 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.913 5.913 19 Si 0.911 3.089 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.179 3.821 24 C 0.119 3.881 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.016 0.984 40 H 0.038 0.962 41 H 0.254 0.746 42 H 0.057 0.943 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -3.320 -17.474 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.274 6.274 5 C -0.028 4.028 6 C 0.311 3.689 7 O -0.381 6.381 8 N -0.348 5.348 9 C -0.022 4.022 10 C -0.158 4.158 11 C -0.132 4.132 12 H 0.106 0.894 13 C 0.018 3.982 14 N -0.330 5.330 15 C -0.364 4.364 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.560 5.560 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.054 3.946 24 C 0.016 3.984 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.034 0.966 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.621 -3.011 -16.631 17.522 hybrid contribution 0.688 0.622 0.321 0.981 sum -3.933 -2.389 -16.310 16.947 Atomic orbital electron populations 1.21844 0.93462 1.02765 1.02519 1.22141 0.95224 0.92566 0.87967 1.22319 1.01697 0.96767 1.02657 1.88092 1.34753 1.69627 1.34901 1.22204 0.87816 0.96724 0.96081 1.19721 0.80468 0.79177 0.89504 1.90766 1.51279 1.58795 1.37260 1.48839 1.19687 1.52535 1.13781 1.22288 0.89536 1.00589 0.89796 1.22740 0.95435 1.01164 0.96437 1.22966 0.95339 0.98376 0.96517 0.89440 1.21060 0.95350 0.91014 0.90788 1.44234 1.10762 1.29820 1.48140 1.18946 0.95813 1.06246 1.15437 0.90421 1.24850 0.96413 0.98746 1.00183 1.69989 1.11560 1.29030 1.45402 0.86231 0.78609 0.79869 0.81198 1.21222 1.21615 1.21136 1.21313 0.85494 0.94617 0.93205 1.23108 0.93510 0.94882 0.86892 0.89942 0.91514 0.91351 0.91978 0.92330 0.92401 0.91744 0.91432 0.90715 0.90936 0.91293 0.91864 0.89521 0.90495 0.96637 0.94408 0.93558 0.92486 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.56 37.16 0.36 -1.10 16 2 C 0.08 0.89 3.34 -26.73 -0.09 0.80 16 3 C -0.18 -1.84 9.53 37.16 0.35 -1.49 16 4 O -0.36 -5.67 9.52 -55.14 -0.52 -6.19 16 5 C 0.05 0.74 5.23 36.01 0.19 0.93 16 6 C 0.52 10.14 7.63 -10.99 -0.08 10.06 16 7 O -0.51 -12.44 16.57 -14.36 -0.24 -12.68 16 8 N -0.61 -10.86 2.85 -160.87 -0.46 -11.32 16 9 C 0.10 1.31 6.66 -2.55 -0.02 1.29 16 10 C -0.12 -1.69 6.35 -24.75 -0.16 -1.85 16 11 C -0.11 -1.85 3.92 -88.21 -0.35 -2.19 16 12 H 0.09 1.18 8.14 -51.94 -0.42 0.76 16 13 C 0.14 2.92 6.49 -3.69 -0.02 2.90 16 14 N -0.60 -15.65 3.39 -171.91 -0.58 -16.24 16 15 C -0.24 -6.71 10.25 -15.06 -0.15 -6.86 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 18 N -0.91 -28.39 10.27 55.49 0.57 -27.82 16 19 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.18 4.64 4.66 -3.35 -0.02 4.62 16 24 C 0.12 2.38 3.91 -65.18 -0.25 2.12 16 25 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 30 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.95 7.57 -51.93 -0.39 0.56 16 34 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.07 0.77 7.49 -51.93 -0.39 0.38 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 41 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.06 1.68 6.87 -51.93 -0.36 1.32 16 43 H 0.04 1.35 7.53 -51.93 -0.39 0.95 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -35.69 343.15 -8.79 -44.48 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.36 Total: -2.08 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.34 Total: 9.00 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.47 Total: -55.37 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.76 Total: -18.87 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.69 -8.79 -44.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187124691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.575 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds