Wall clock time and date at job start Tue Mar 31 2020 02:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47000 * 2 1 4 4 O 1.42902 * 109.46942 * 120.00363 * 2 1 3 5 5 C 1.42897 * 113.99646 * 150.00286 * 4 2 1 6 6 C 1.50702 * 109.46995 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99828 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00249 * 179.97438 * 6 5 4 9 9 C 1.47342 * 125.52130 * 359.97062 * 8 6 5 10 10 C 1.54955 * 104.90129 * 156.74249 * 9 8 6 11 11 C 1.54796 * 101.45313 * 37.25784 * 10 9 8 12 12 H 1.08989 * 112.84650 * 86.23480 * 11 10 9 13 13 C 1.53514 * 109.68513 * 212.92715 * 11 10 9 14 14 N 1.46653 * 107.22312 * 84.72850 * 13 11 10 15 15 C 1.36935 * 125.28841 * 197.47095 * 14 13 11 16 16 H 1.07994 * 119.99994 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99726 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00042 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99802 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47294 * 59.99922 * 19 17 15 21 21 H 1.48498 * 109.47173 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47191 * 299.99748 * 19 17 15 23 23 C 1.46949 * 109.16835 * 17.46624 * 14 13 11 24 24 C 1.48505 * 125.37893 * 180.66416 * 8 6 5 25 25 H 1.09007 * 112.73619 * 56.89098 * 24 8 6 26 26 H 1.08997 * 109.47073 * 299.99551 * 1 2 3 27 27 H 1.08997 * 109.47453 * 60.00005 * 1 2 3 28 28 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47073 * 240.00449 * 2 1 3 30 30 H 1.09000 * 109.46978 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47013 * 300.00264 * 3 2 1 32 32 H 1.09002 * 109.46626 * 59.99867 * 3 2 1 33 33 H 1.08991 * 109.47609 * 59.99837 * 5 4 2 34 34 H 1.08997 * 109.47147 * 299.98946 * 5 4 2 35 35 H 1.09000 * 110.35469 * 37.89349 * 9 8 6 36 36 H 1.08993 * 110.44869 * 275.64364 * 9 8 6 37 37 H 1.08993 * 111.02671 * 279.21676 * 10 9 8 38 38 H 1.08990 * 111.03032 * 155.29427 * 10 9 8 39 39 H 1.09002 * 109.91762 * 204.17972 * 13 11 10 40 40 H 1.09002 * 109.91557 * 325.27727 * 13 11 10 41 41 H 0.97003 * 120.00235 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.65076 * 238.24258 * 23 14 13 43 43 H 1.09002 * 109.68179 * 117.71071 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9885 6 6 3.6699 -1.9979 2.2748 7 8 2.9501 -1.9271 3.2484 8 7 4.8309 -2.6789 2.3433 9 6 5.7935 -2.8430 1.2398 10 6 7.1474 -3.1392 1.9329 11 6 6.6970 -4.0199 3.1236 12 1 6.6210 -5.0757 2.8641 13 6 7.6136 -3.7678 4.3290 14 7 7.0912 -2.5923 5.0334 15 6 7.7870 -1.8408 5.9424 16 1 8.8057 -2.0999 6.1902 17 6 7.1829 -0.7460 6.5453 18 7 5.9416 -0.4301 6.2428 19 14 8.1318 0.2786 7.7858 20 1 9.3401 0.8479 7.1367 21 1 7.2694 1.3821 8.2794 22 1 8.5406 -0.5792 8.9270 23 6 5.7054 -2.3513 4.6080 24 6 5.3375 -3.3965 3.5407 25 1 4.6386 -4.1478 3.9086 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 4.0199 -0.5874 0.7125 34 1 3.1809 -2.0707 0.1986 35 1 5.8598 -1.9256 0.6550 36 1 5.5032 -3.6781 0.6024 37 1 7.6174 -2.2200 2.2821 38 1 7.8141 -3.6900 1.2695 39 1 7.6021 -4.6332 4.9916 40 1 8.6307 -3.5748 3.9880 41 1 5.5193 0.3347 6.6644 42 1 5.6203 -1.3497 4.1865 43 1 5.0368 -2.4482 5.4634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187124691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:00 Heat of formation + Delta-G solvation = -70.961569 kcal Electronic energy + Delta-G solvation = -23325.802694 eV Core-core repulsion = 19985.058360 eV Total energy + Delta-G solvation = -3340.744334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.46241 -39.80320 -38.63621 -36.57281 -34.15403 -33.66338 -32.22304 -30.76740 -29.10392 -28.15385 -27.65231 -26.34735 -23.82338 -22.42851 -22.20644 -21.04989 -20.12925 -18.92950 -18.16544 -17.91967 -17.08230 -16.92687 -16.50969 -16.22714 -15.50265 -15.44371 -15.06548 -14.95765 -14.37440 -14.11724 -13.95077 -13.65506 -13.48144 -13.32653 -13.21182 -13.06701 -12.93704 -12.85474 -12.66413 -12.59166 -12.36212 -12.20724 -11.87659 -11.82242 -11.63828 -11.50991 -11.43335 -10.81151 -10.70758 -10.63829 -9.63554 -8.91820 -7.85265 -5.24856 1.40788 1.45775 1.52544 1.60463 1.74132 2.47184 2.89779 3.31348 3.39615 3.66758 3.72226 3.79018 3.99654 4.01386 4.10403 4.12171 4.27234 4.30292 4.34169 4.40052 4.51170 4.59317 4.72602 4.73914 4.81255 4.88497 4.89248 4.93998 4.97058 5.10710 5.19524 5.21332 5.28602 5.32944 5.43498 5.51860 5.57561 5.78230 6.16885 6.21261 6.61272 7.04641 7.22904 7.76698 8.38791 9.22901 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004977 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.399739 B = 5624.264904 C = 6708.720938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.176 4.176 4 O -0.398 6.398 5 C 0.062 3.938 6 C 0.509 3.491 7 O -0.581 6.581 8 N -0.611 5.611 9 C 0.097 3.903 10 C -0.114 4.114 11 C -0.092 4.092 12 H 0.136 0.864 13 C 0.134 3.866 14 N -0.624 5.624 15 C -0.243 4.243 16 H 0.092 0.908 17 C -0.072 4.072 18 N -0.954 5.954 19 Si 0.982 3.018 20 H -0.269 1.269 21 H -0.301 1.301 22 H -0.273 1.273 23 C 0.201 3.799 24 C 0.118 3.882 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.127 0.873 39 H 0.021 0.979 40 H 0.054 0.946 41 H 0.242 0.758 42 H 0.010 0.990 43 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 -4.778 -21.224 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 C -0.233 4.233 4 O -0.318 6.318 5 C -0.017 4.017 6 C 0.298 3.702 7 O -0.460 6.460 8 N -0.346 5.346 9 C -0.024 4.024 10 C -0.151 4.151 11 C -0.112 4.112 12 H 0.154 0.846 13 C 0.009 3.991 14 N -0.350 5.350 15 C -0.372 4.372 16 H 0.109 0.891 17 C -0.264 4.264 18 N -0.603 5.603 19 Si 0.809 3.191 20 H -0.195 1.195 21 H -0.227 1.227 22 H -0.199 1.199 23 C 0.075 3.925 24 C 0.014 3.986 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.146 0.854 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.028 0.972 43 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -2.655 -4.515 -20.447 21.107 hybrid contribution 0.129 1.036 1.500 1.827 sum -2.526 -3.479 -18.948 19.429 Atomic orbital electron populations 1.21887 0.92844 1.02794 1.03005 1.22469 0.95818 0.92707 0.87617 1.22330 1.01503 0.96608 1.02903 1.88067 1.35430 1.70427 1.37884 1.22242 0.87912 0.97829 0.93722 1.20869 0.80141 0.78560 0.90612 1.90727 1.53734 1.61391 1.40107 1.48958 1.20005 1.51420 1.14253 1.22719 0.87348 1.03721 0.88580 1.22761 0.96743 0.99535 0.96096 1.23029 0.91164 1.01227 0.95745 0.84640 1.21369 0.96933 0.88722 0.92034 1.44547 1.10854 1.31308 1.48334 1.19483 0.96428 1.06082 1.15238 0.89059 1.25804 0.97306 1.00565 1.02772 1.70316 1.13684 1.29300 1.47004 0.85109 0.77331 0.77792 0.78865 1.19476 1.22750 1.19919 1.20813 0.84751 0.94501 0.92422 1.22838 0.95834 0.93303 0.86638 0.90631 0.93577 0.88282 0.92184 0.89061 0.92674 0.88813 0.93850 0.88875 0.86316 0.89037 0.87099 0.93300 0.85438 0.96104 0.92749 0.94926 0.97166 1.00352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.56 71.98 0.69 -2.04 16 2 C 0.07 1.46 3.34 30.60 0.10 1.56 16 3 C -0.18 -3.44 9.53 71.98 0.69 -2.76 16 4 O -0.40 -12.66 9.52 -129.94 -1.24 -13.90 16 5 C 0.06 1.68 5.23 71.24 0.37 2.05 16 6 C 0.51 20.05 7.63 87.66 0.67 20.72 16 7 O -0.58 -30.63 16.57 16.00 0.27 -30.37 16 8 N -0.61 -21.19 2.85 -781.25 -2.23 -23.42 16 9 C 0.10 2.07 6.66 86.89 0.58 2.65 16 10 C -0.11 -2.72 6.35 31.88 0.20 -2.52 16 11 C -0.09 -2.76 3.92 -9.23 -0.04 -2.79 16 12 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 13 C 0.13 5.25 6.49 86.52 0.56 5.81 16 14 N -0.62 -33.41 3.39 -697.80 -2.36 -35.78 16 15 C -0.24 -14.18 10.25 84.04 0.86 -13.32 16 16 H 0.09 4.93 7.83 -2.91 -0.02 4.91 16 17 C -0.07 -4.36 5.49 84.86 0.47 -3.90 16 18 N -0.95 -63.66 10.27 21.65 0.22 -63.43 16 19 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 C 0.20 11.16 4.66 86.58 0.40 11.56 16 24 C 0.12 4.77 3.91 45.67 0.18 4.95 16 25 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.29 7.79 -2.39 -0.02 1.27 16 30 H 0.05 1.09 7.87 -2.39 -0.02 1.07 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 2.15 7.57 -2.39 -0.02 2.13 16 34 H 0.12 2.08 8.08 -2.39 -0.02 2.06 16 35 H 0.09 1.60 7.49 -2.39 -0.02 1.58 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.56 7.93 -2.39 -0.02 1.55 16 38 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 1.96 7.95 -2.39 -0.02 1.94 16 41 H 0.24 15.94 8.31 -92.71 -0.77 15.16 16 42 H 0.01 0.65 6.87 -2.39 -0.02 0.63 16 43 H -0.02 -1.46 7.53 -2.39 -0.02 -1.48 16 Total: -1.00 -89.92 343.15 3.39 -86.53 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.97 Total: 8.13 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 5.73 Total: 21.98 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -4.37 Total: -122.63 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.97 Total: -44.26 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -89.92 3.39 -86.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187124691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.570 kcal (2) G-P(sol) polarization free energy of solvation -89.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds