Wall clock time and date at job start Tue Mar 31 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47282 * 2 1 4 4 O 1.42897 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.42905 * 114.00074 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46909 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00319 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.47352 * 125.51947 * 359.97109 * 8 6 5 10 10 C 1.54947 * 104.89842 * 156.72263 * 9 8 6 11 11 C 1.54792 * 101.45812 * 37.25666 * 10 9 8 12 12 H 1.08998 * 112.84859 * 86.23364 * 11 10 9 13 13 C 1.53514 * 109.68693 * 212.92708 * 11 10 9 14 14 N 1.46653 * 107.22312 * 83.98515 * 13 11 10 15 15 C 1.36935 * 125.28841 * 197.47095 * 14 13 11 16 16 H 1.07994 * 119.99994 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99726 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00042 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99802 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47182 * 89.99784 * 19 17 15 21 21 H 1.48501 * 109.47129 * 209.99722 * 19 17 15 22 22 H 1.48503 * 109.47285 * 329.99701 * 19 17 15 23 23 C 1.46949 * 109.16835 * 17.46624 * 14 13 11 24 24 C 1.47249 * 125.52688 * 179.97438 * 8 6 5 25 25 H 1.09007 * 111.94610 * 56.65103 * 24 8 6 26 26 H 1.09003 * 109.47664 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47306 * 299.99652 * 1 2 3 28 28 H 1.09005 * 109.47225 * 59.99781 * 1 2 3 29 29 H 1.09002 * 109.46679 * 239.99931 * 2 1 3 30 30 H 1.08995 * 109.47189 * 120.00226 * 2 1 3 31 31 H 1.09009 * 109.47079 * 60.00049 * 3 2 1 32 32 H 1.09005 * 109.47170 * 300.00253 * 3 2 1 33 33 H 1.09008 * 109.46929 * 59.99726 * 5 4 3 34 34 H 1.08997 * 109.46748 * 299.99526 * 5 4 3 35 35 H 1.09000 * 110.35482 * 37.87249 * 9 8 6 36 36 H 1.09001 * 110.44286 * 275.62289 * 9 8 6 37 37 H 1.08995 * 111.03188 * 279.21136 * 10 9 8 38 38 H 1.08998 * 111.03240 * 155.29655 * 10 9 8 39 39 H 1.09002 * 109.91762 * 203.43637 * 13 11 10 40 40 H 1.09002 * 109.91557 * 324.53392 * 13 11 10 41 41 H 0.97003 * 120.00235 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.65076 * 238.24258 * 23 14 13 43 43 H 1.09002 * 109.68179 * 117.71071 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5525 2.6288 -0.0001 7 8 6.0741 1.5339 -0.0001 8 7 6.3165 3.7392 0.0008 9 6 5.8138 5.1243 0.0014 10 6 6.9706 5.9677 0.5941 11 6 8.2078 5.2598 -0.0093 12 1 8.4685 5.6337 -0.9994 13 6 9.3786 5.3311 0.9811 14 7 9.2156 4.2223 1.9269 15 6 9.8338 4.1240 3.1448 16 1 10.5041 4.9038 3.4746 17 6 9.5988 3.0218 3.9554 18 7 8.7814 2.0717 3.5537 19 14 10.4427 2.8874 5.6165 20 1 9.5930 3.5216 6.6562 21 1 10.6497 1.4556 5.9520 22 1 11.7562 3.5779 5.5617 23 6 8.2849 3.2369 1.3593 24 6 7.7888 3.7648 0.0014 25 1 8.2061 3.2166 -0.8433 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9563 -0.8900 33 1 3.7289 3.2883 0.8904 34 1 3.7283 3.2893 -0.8896 35 1 4.9259 5.2051 0.6284 36 1 5.5903 5.4486 -1.0149 37 1 6.9790 5.9099 1.6825 38 1 6.9108 7.0034 0.2596 39 1 10.3234 5.2279 0.4472 40 1 9.3559 6.2811 1.5151 41 1 8.6175 1.3014 4.1200 42 1 7.4385 3.1017 2.0328 43 1 8.7982 2.2856 1.2185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187175422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:02 Heat of formation + Delta-G solvation = -49.044302 kcal Electronic energy + Delta-G solvation = -23031.424172 eV Core-core repulsion = 19691.630242 eV Total energy + Delta-G solvation = -3339.793930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07278 -38.40294 -37.13740 -34.84526 -33.76216 -32.24241 -30.62731 -29.28021 -27.91540 -26.56134 -25.49168 -24.36964 -22.53961 -21.67843 -20.54901 -19.62036 -18.60483 -17.15262 -16.78392 -16.56792 -16.24313 -15.38412 -15.25137 -14.75959 -14.40981 -14.09651 -13.80627 -13.40068 -13.36921 -12.76962 -12.67164 -12.29601 -12.18042 -12.07090 -12.00606 -11.69217 -11.41237 -11.14531 -11.04313 -11.01295 -10.95097 -10.74446 -10.51550 -10.18315 -9.99315 -9.83563 -9.70205 -9.65599 -9.28478 -8.54505 -8.15728 -6.76417 -5.62293 -2.99222 2.93525 3.06918 3.43828 3.48316 3.51680 3.93357 4.54525 4.63837 4.79976 4.84717 4.89401 5.07312 5.12245 5.16966 5.18376 5.27614 5.31518 5.35950 5.49218 5.55384 5.56208 5.59152 5.73551 5.79616 5.82902 5.94404 5.97725 6.06839 6.07724 6.20907 6.40335 6.60522 6.62260 6.64967 6.87728 7.09758 7.63021 7.67739 7.95265 7.98951 8.34382 8.64301 9.27793 9.89095 10.52690 11.47294 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.004537 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.318743 B = 6169.883338 C = 7378.114391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.362 6.362 5 C 0.053 3.947 6 C 0.525 3.475 7 O -0.507 6.507 8 N -0.609 5.609 9 C 0.100 3.900 10 C -0.121 4.121 11 C -0.111 4.111 12 H 0.088 0.912 13 C 0.145 3.855 14 N -0.602 5.602 15 C -0.235 4.235 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.913 5.913 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.179 3.821 24 C 0.118 3.882 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.016 0.984 40 H 0.038 0.962 41 H 0.253 0.747 42 H 0.056 0.944 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.364 5.976 -9.843 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.280 6.280 5 C -0.027 4.027 6 C 0.312 3.688 7 O -0.381 6.381 8 N -0.346 5.346 9 C -0.023 4.023 10 C -0.159 4.159 11 C -0.131 4.131 12 H 0.107 0.893 13 C 0.018 3.982 14 N -0.330 5.330 15 C -0.363 4.363 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.560 5.560 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.053 3.947 24 C 0.015 3.985 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.034 0.966 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.028 4.937 -9.662 17.735 hybrid contribution 0.186 0.229 0.902 0.949 sum -13.843 5.166 -8.760 17.177 Atomic orbital electron populations 1.21693 0.94846 1.02174 1.01852 1.21449 0.95392 0.95592 1.03798 1.22599 0.80959 0.98127 0.99982 1.88029 1.19133 1.25525 1.95355 1.22157 0.92195 0.86471 1.01916 1.19701 0.87846 0.83703 0.77578 1.90766 1.74174 1.25633 1.47504 1.48511 1.07229 1.05109 1.73743 1.22315 0.97863 0.82038 1.00088 1.22753 0.93219 0.97786 1.02117 1.22970 0.96500 0.94416 0.99220 0.89345 1.21056 0.93923 0.92666 0.90555 1.44239 1.52381 1.19393 1.16951 1.18988 1.21067 1.04553 0.91678 0.90373 1.24856 0.99691 0.96944 0.98798 1.70000 1.38652 1.10479 1.36837 0.86148 0.78885 0.76941 0.83924 1.21674 1.21667 1.20699 1.21335 0.93865 0.91668 0.87793 1.22863 0.78392 0.96195 1.01094 0.90170 0.92049 0.92556 0.92656 0.91000 0.90812 0.93273 0.93450 0.90585 0.90880 0.91280 0.91798 0.89491 0.90504 0.96617 0.94399 0.93625 0.92552 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.29 6.30 -26.73 -0.17 -1.46 16 3 C 0.06 0.68 5.94 37.16 0.22 0.90 16 4 O -0.36 -5.83 9.88 -55.14 -0.54 -6.37 16 5 C 0.05 0.76 5.42 36.00 0.20 0.95 16 6 C 0.53 10.15 7.64 -10.99 -0.08 10.07 16 7 O -0.51 -12.44 16.58 -14.35 -0.24 -12.68 16 8 N -0.61 -10.82 2.83 -161.78 -0.46 -11.27 16 9 C 0.10 1.29 6.66 -2.55 -0.02 1.28 16 10 C -0.12 -1.70 6.32 -24.76 -0.16 -1.86 16 11 C -0.11 -1.83 3.97 -88.21 -0.35 -2.18 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 13 C 0.14 2.92 6.49 -3.69 -0.02 2.90 16 14 N -0.60 -15.63 3.39 -171.88 -0.58 -16.21 16 15 C -0.23 -6.65 10.25 -15.06 -0.15 -6.80 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 18 N -0.91 -28.34 10.27 55.49 0.57 -27.77 16 19 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.18 4.63 4.65 -3.33 -0.02 4.61 16 24 C 0.12 2.36 3.81 -65.85 -0.25 2.10 16 25 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.96 7.85 -51.92 -0.41 0.55 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.77 7.49 -51.93 -0.39 0.38 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.04 0.73 7.96 -51.93 -0.41 0.32 16 41 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.06 1.65 6.90 -51.93 -0.36 1.30 16 43 H 0.04 1.35 7.53 -51.93 -0.39 0.96 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -35.69 344.32 -9.03 -44.73 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.41 Total: -2.76 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -0.53 Total: 9.49 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.47 Total: -55.26 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.78 Total: -19.05 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.69 -9.03 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187175422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.318 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds